RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 IQGAP3Q86VI3 1631 aa15.43■□□□□ 0.06
VPS28-204ENST00000526054 RRBP1Q9P2E9 1410 aaKnown RBP15.43■□□□□ 0.06
VPS28-204ENST00000526054 TMEM94Q12767 1356 aa15.42■□□□□ 0.06
VPS28-204ENST00000526054 ROCK1Q13464 1354 aa15.42■□□□□ 0.06
VPS28-204ENST00000526054 SLC26A8Q96RN1 970 aa15.42■□□□□ 0.06
VPS28-204ENST00000526054 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
VPS28-204ENST00000526054 ZFYVE9O95405 1425 aa15.41■□□□□ 0.06
VPS28-204ENST00000526054 KCNA6P17658 529 aa15.4■□□□□ 0.06
VPS28-204ENST00000526054 ROBO1Q9Y6N7 1651 aa15.4■□□□□ 0.06
VPS28-204ENST00000526054 BCANQ96GW7 911 aa15.39■□□□□ 0.05
VPS28-204ENST00000526054 RIMS2Q9UQ26 1411 aa15.39■□□□□ 0.05
VPS28-204ENST00000526054 PLEKHG1Q9ULL1 1385 aa15.38■□□□□ 0.05
VPS28-204ENST00000526054 CHD2O14647 1828 aaKnown RBP15.38■□□□□ 0.05
VPS28-204ENST00000526054 PPP1R15AO75807 674 aaPredicted RBP15.37■□□□□ 0.05
VPS28-204ENST00000526054 FAM135BQ49AJ0 1406 aa15.36■□□□□ 0.05
VPS28-204ENST00000526054 PROSER2Q86WR7 435 aaPredicted RBP15.36■□□□□ 0.05
VPS28-204ENST00000526054 DIP2AQ14689 1571 aa15.35■□□□□ 0.05
VPS28-204ENST00000526054 MSH6P52701 1360 aa15.35■□□□□ 0.05
VPS28-204ENST00000526054 CHGAP10645 457 aaKnown RBP15.34■□□□□ 0.05
VPS28-204ENST00000526054 HDGFP51858 240 aaKnown RBP15.34■□□□□ 0.05
VPS28-204ENST00000526054 RBM33Q96EV2 1170 aaKnown RBP15.34■□□□□ 0.05
VPS28-204ENST00000526054 SPHKAPQ2M3C7 1700 aa15.34■□□□□ 0.05
VPS28-204ENST00000526054 ITGAEP38570 1179 aa15.33■□□□□ 0.04
VPS28-204ENST00000526054 NUP155O75694 1391 aa15.33■□□□□ 0.04
VPS28-204ENST00000526054 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS28-204ENST00000526054 PHLPP1O60346 1717 aa15.31■□□□□ 0.04
VPS28-204ENST00000526054 TRPM2O94759 1503 aa15.3■□□□□ 0.04
VPS28-204ENST00000526054 ADAMTS13Q76LX8 1427 aa15.3■□□□□ 0.04
VPS28-204ENST00000526054 NUTM2DQ5VT03 806 aaPredicted RBP15.28■□□□□ 0.04
VPS28-204ENST00000526054 TBX22Q9Y458 520 aa15.28■□□□□ 0.04
VPS28-204ENST00000526054 NCOA3Q9Y6Q9 1424 aa15.26■□□□□ 0.03
VPS28-204ENST00000526054 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.26■□□□□ 0.03
VPS28-204ENST00000526054 PIK3R4Q99570 1358 aa15.26■□□□□ 0.03
VPS28-204ENST00000526054 NRXN3Q9Y4C0 1643 aa15.26■□□□□ 0.03
VPS28-204ENST00000526054 C14orf37Q86TY3 774 aa15.25■□□□□ 0.03
VPS28-204ENST00000526054 SLAIN2Q9P270 581 aa15.25■□□□□ 0.03
VPS28-204ENST00000526054 COL16A1Q07092 1604 aaPredicted RBP15.25■□□□□ 0.03
VPS28-204ENST00000526054 SETBP1Q9Y6X0 1596 aa15.24■□□□□ 0.03
VPS28-204ENST00000526054 XRN1Q8IZH2 1706 aaKnown RBP15.24■□□□□ 0.03
VPS28-204ENST00000526054 CLTCL1P53675 1640 aa15.24■□□□□ 0.03
VPS28-204ENST00000526054 RGS17Q9UGC6 210 aaPredicted RBP15.23■□□□□ 0.03
VPS28-204ENST00000526054 JCADQ9P266 1359 aa15.22■□□□□ 0.03
VPS28-204ENST00000526054 KIF1BO60333 1816 aa15.22■□□□□ 0.03
VPS28-204ENST00000526054 PTPRUQ92729 1446 aa15.21■□□□□ 0.03
VPS28-204ENST00000526054 AHDC1Q5TGY3 1603 aaPredicted RBP15.21■□□□□ 0.02
VPS28-204ENST00000526054 NEXMIFQ5QGS0 1516 aa15.2■□□□□ 0.02
VPS28-204ENST00000526054 HFM1A2PYH4 1435 aa15.19■□□□□ 0.02
VPS28-204ENST00000526054 NAIPQ13075 1403 aa15.19■□□□□ 0.02
VPS28-204ENST00000526054 ZNF326Q5BKZ1 582 aaKnown RBP15.19■□□□□ 0.02
VPS28-204ENST00000526054 CADPS2Q86UW7 1296 aa15.19■□□□□ 0.02
VPS28-204ENST00000526054 AMOTL2Q9Y2J4 779 aa15.19■□□□□ 0.02
VPS28-204ENST00000526054 DCCP43146 1447 aa15.18■□□□□ 0.02
VPS28-204ENST00000526054 ATF3P18847 181 aa15.18■□□□□ 0.02
VPS28-204ENST00000526054 C19orf44Q9H6X5 657 aa15.18■□□□□ 0.02
VPS28-204ENST00000526054 SHPRHQ149N8 1683 aa15.18■□□□□ 0.02
VPS28-204ENST00000526054 NALCNQ8IZF0 1738 aa15.15■□□□□ 0.02
VPS28-204ENST00000526054 LRP6O75581 1613 aa15.15■□□□□ 0.02
VPS28-204ENST00000526054 POTEAQ6S8J7 498 aa15.15■□□□□ 0.02
VPS28-204ENST00000526054 ASXL1Q8IXJ9 1541 aa15.15■□□□□ 0.02
VPS28-204ENST00000526054 SETD1AO15047 1707 aaKnown RBP15.14■□□□□ 0.01
VPS28-204ENST00000526054 METP08581 1390 aa15.14■□□□□ 0.01
VPS28-204ENST00000526054 NHSL1Q5SYE7 1610 aa15.14■□□□□ 0.01
VPS28-204ENST00000526054 SPATA31A6Q5VVP1 1343 aa15.13■□□□□ 0.01
VPS28-204ENST00000526054 MST1RQ04912 1400 aa15.12■□□□□ 0.01
VPS28-204ENST00000526054 ADGRL3Q9HAR2 1447 aa15.12■□□□□ 0.01
VPS28-204ENST00000526054 BRINP3Q76B58 766 aa15.11■□□□□ 0.01
VPS28-204ENST00000526054 PPLO60437 1756 aa15.11■□□□□ 0.01
VPS28-204ENST00000526054 MEX3CQ5U5Q3 659 aaKnown RBP15.1■□□□□ 0.01
VPS28-204ENST00000526054 TRIM52Q96A61 297 aa15.1■□□□□ 0.01
VPS28-204ENST00000526054 PTCH1Q13635 1447 aa15.09■□□□□ 0.01
VPS28-204ENST00000526054 SETD5Q9C0A6 1442 aa15.08■□□□□ 0
VPS28-204ENST00000526054 SLC4A1APQ9BWU0 796 aaKnown RBP15.06■□□□□ 0
VPS28-204ENST00000526054 ACIN1Q9UKV3 1341 aaKnown RBP15.06■□□□□ 0
VPS28-204ENST00000526054 VGFO15240 615 aaPredicted RBP15.05■□□□□ -0
VPS28-204ENST00000526054 PRAG1Q86YV5 1406 aa15.05■□□□□ -0
VPS28-204ENST00000526054 ZNF772Q68DY9 489 aaPredicted RBP15.04■□□□□ -0
VPS28-204ENST00000526054 RPGRIP1LQ68CZ1 1315 aa15.03■□□□□ -0
VPS28-204ENST00000526054 LAMC1P11047 1609 aa15.03■□□□□ -0
VPS28-204ENST00000526054 ROBO2Q9HCK4 1378 aa15.02■□□□□ -0
VPS28-204ENST00000526054 NUTM2BA6NNL0 878 aaPredicted RBP15.02■□□□□ -0
VPS28-204ENST00000526054 NUTM2EB1AL46 878 aaPredicted RBP15.02■□□□□ -0
VPS28-204ENST00000526054 NUTM2AQ8IVF1 878 aaPredicted RBP15.02■□□□□ -0
VPS28-204ENST00000526054 IFT172Q9UG01 1749 aa15.02□□□□□ -0.01
VPS28-204ENST00000526054 C1orf167Q5SNV9 1468 aa15.01□□□□□ -0.01
VPS28-204ENST00000526054 CCDC144AA2RUR9 1427 aa15.01□□□□□ -0.01
VPS28-204ENST00000526054 RAB3GAP2Q9H2M9 1393 aa15.01□□□□□ -0.01
VPS28-204ENST00000526054 PNPLA6Q8IY17 1366 aa15□□□□□ -0.01
VPS28-204ENST00000526054 TRIM26Q12899 539 aaPredicted RBP15□□□□□ -0.01
VPS28-204ENST00000526054 LRRC59Q96AG4 307 aaKnown RBP15□□□□□ -0.01
VPS28-204ENST00000526054 CDC42BPGQ6DT37 1551 aa14.99□□□□□ -0.01
VPS28-204ENST00000526054 DDX17Q92841 729 aaKnown RBP14.99□□□□□ -0.01
VPS28-204ENST00000526054 FOXD1Q16676 465 aa14.98□□□□□ -0.01
VPS28-204ENST00000526054 AFF2P51816 1311 aa14.97□□□□□ -0.01
VPS28-204ENST00000526054 KNDC1Q76NI1 1749 aa14.97□□□□□ -0.01
VPS28-204ENST00000526054 CDK12Q9NYV4 1490 aaPredicted RBP14.96□□□□□ -0.01
VPS28-204ENST00000526054 SPATA31E1Q6ZUB1 1445 aa14.96□□□□□ -0.01
VPS28-204ENST00000526054 HRCP23327 699 aa14.95□□□□□ -0.02
VPS28-204ENST00000526054 RXRBP28702 533 aa14.95□□□□□ -0.02
VPS28-204ENST00000526054 C8orf37Q96NL8 207 aa14.94□□□□□ -0.02
VPS28-204ENST00000526054 COL22A1Q8NFW1 1626 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms