RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 GPR37O15354 613 aa11.83□□□□□ -0.52
CSDE1-210ENST00000525878 PPP1R18Q6NYC8 613 aa11.83□□□□□ -0.52
CSDE1-210ENST00000525878 PXYLP1Q8TE99 480 aa11.83□□□□□ -0.52
CSDE1-210ENST00000525878 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.82□□□□□ -0.52
CSDE1-210ENST00000525878 NKX2-3Q8TAU0 364 aa11.82□□□□□ -0.52
CSDE1-210ENST00000525878 OATP04181 439 aa11.81□□□□□ -0.52
CSDE1-210ENST00000525878 COPS2P61201 443 aa11.81□□□□□ -0.52
CSDE1-210ENST00000525878 ZPR1O75312 459 aa11.79□□□□□ -0.52
CSDE1-210ENST00000525878 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.79□□□□□ -0.52
CSDE1-210ENST00000525878 GNPATO15228 680 aa11.78□□□□□ -0.52
CSDE1-210ENST00000525878 SLC10A3P09131 477 aa11.78□□□□□ -0.52
CSDE1-210ENST00000525878 FECHP22830 423 aa11.78□□□□□ -0.52
CSDE1-210ENST00000525878 METTL3Q86U44 580 aaKnown RBP11.78□□□□□ -0.52
CSDE1-210ENST00000525878 PCDHB3Q9Y5E6 796 aa11.78□□□□□ -0.52
CSDE1-210ENST00000525878 ACTN4O43707 911 aaKnown RBP11.77□□□□□ -0.53
CSDE1-210ENST00000525878 BLOC1S3Q6QNY0 202 aa11.76□□□□□ -0.53
CSDE1-210ENST00000525878 PRKD2Q9BZL6 878 aa11.75□□□□□ -0.53
CSDE1-210ENST00000525878 CFHP08603 1231 aa11.74□□□□□ -0.53
CSDE1-210ENST00000525878 KMT5BQ4FZB7 885 aa11.74□□□□□ -0.53
CSDE1-210ENST00000525878 V9GY48 417 aaPredicted RBP11.74□□□□□ -0.53
CSDE1-210ENST00000525878 TMUB1Q9BVT8 246 aa11.73□□□□□ -0.53
CSDE1-210ENST00000525878 VSIG10Q8N0Z9 540 aa11.72□□□□□ -0.53
CSDE1-210ENST00000525878 GGCXP38435 758 aa11.71□□□□□ -0.53
CSDE1-210ENST00000525878 LAPTM4AQ15012 233 aa11.68□□□□□ -0.54
CSDE1-210ENST00000525878 DAXXQ9UER7 740 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-210ENST00000525878 TLL1O43897 1013 aa11.67□□□□□ -0.54
CSDE1-210ENST00000525878 GPIHBP1Q8IV16 184 aa11.67□□□□□ -0.54
CSDE1-210ENST00000525878 PHOX2BQ99453 314 aa11.66□□□□□ -0.54
CSDE1-210ENST00000525878 RNF223E7ERA6 249 aa11.65□□□□□ -0.54
CSDE1-210ENST00000525878 GFRA3O60609 400 aa11.64□□□□□ -0.55
CSDE1-210ENST00000525878 RSPH4AQ5TD94 716 aa11.64□□□□□ -0.55
CSDE1-210ENST00000525878 Q6ZNB5 142 aa11.64□□□□□ -0.55
CSDE1-210ENST00000525878 NR1I2O75469 434 aa11.63□□□□□ -0.55
CSDE1-210ENST00000525878 EMID1Q96A84 441 aaPredicted RBP11.63□□□□□ -0.55
CSDE1-210ENST00000525878 LCE2BO14633 110 aa11.61□□□□□ -0.55
CSDE1-210ENST00000525878 ADH1BP00325 375 aa11.61□□□□□ -0.55
CSDE1-210ENST00000525878 SCUBE3Q8IX30 993 aa11.61□□□□□ -0.55
CSDE1-210ENST00000525878 NLRP7Q8WX94 980 aa11.61□□□□□ -0.55
CSDE1-210ENST00000525878 NRG2O14511 850 aaPredicted RBP11.6□□□□□ -0.55
CSDE1-210ENST00000525878 ANKLE1Q8NAG6 615 aa11.6□□□□□ -0.55
CSDE1-210ENST00000525878 S1PR4O95977 384 aa11.59□□□□□ -0.55
CSDE1-210ENST00000525878 PUS10Q3MIT2 529 aaKnown RBP11.59□□□□□ -0.55
CSDE1-210ENST00000525878 DDX11L8A8MPP1 907 aa11.57□□□□□ -0.56
CSDE1-210ENST00000525878 RDH13Q8NBN7 331 aa11.57□□□□□ -0.56
CSDE1-210ENST00000525878 SLC19A1P41440 591 aa11.56□□□□□ -0.56
CSDE1-210ENST00000525878 GCGRP47871 477 aa11.56□□□□□ -0.56
CSDE1-210ENST00000525878 MAP2K5Q13163 448 aa11.56□□□□□ -0.56
CSDE1-210ENST00000525878 MORN1Q5T089 497 aa11.56□□□□□ -0.56
CSDE1-210ENST00000525878 SULF1Q8IWU6 871 aa11.56□□□□□ -0.56
CSDE1-210ENST00000525878 PPEF1O14829 653 aaPredicted RBP11.55□□□□□ -0.56
CSDE1-210ENST00000525878 FUT2Q10981 343 aa11.55□□□□□ -0.56
CSDE1-210ENST00000525878 THAP11Q96EK4 314 aa11.54□□□□□ -0.56
CSDE1-210ENST00000525878 SLC6A16Q9GZN6 736 aa11.54□□□□□ -0.56
CSDE1-210ENST00000525878 ATP6V1AP38606 617 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 SPRYD7Q5W111 196 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 TRAF7Q6Q0C0 670 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 TRIM67Q6ZTA4 783 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 SPSB2Q99619 263 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 PDZRN3Q9UPQ7 1066 aa11.53□□□□□ -0.56
CSDE1-210ENST00000525878 TULP1O00294 542 aaPredicted RBP11.52□□□□□ -0.57
CSDE1-210ENST00000525878 IRF6O14896 467 aa11.52□□□□□ -0.57
CSDE1-210ENST00000525878 LIAT1Q6ZQX7 453 aa11.52□□□□□ -0.57
CSDE1-210ENST00000525878 PLA2G2CQ5R387 149 aa11.5□□□□□ -0.57
CSDE1-210ENST00000525878 ZNF598Q86UK7 904 aaKnown RBP11.5□□□□□ -0.57
CSDE1-210ENST00000525878 SALL2Q9Y467 1007 aaPredicted RBP11.5□□□□□ -0.57
CSDE1-210ENST00000525878 SLC27A5Q9Y2P5 690 aa11.49□□□□□ -0.57
CSDE1-210ENST00000525878 MINK1Q8N4C8 1332 aaPredicted RBP11.49□□□□□ -0.57
CSDE1-210ENST00000525878 CD46P15529 392 aa11.48□□□□□ -0.57
CSDE1-210ENST00000525878 PRR20EP86478 221 aa11.46□□□□□ -0.57
CSDE1-210ENST00000525878 PRR20CP86479 221 aa11.46□□□□□ -0.57
CSDE1-210ENST00000525878 PRR20DP86480 221 aa11.46□□□□□ -0.57
CSDE1-210ENST00000525878 PRR20BP86481 221 aa11.46□□□□□ -0.57
CSDE1-210ENST00000525878 PRR20AP86496 221 aa11.46□□□□□ -0.57
CSDE1-210ENST00000525878 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.46□□□□□ -0.57
CSDE1-210ENST00000525878 FAM160A2Q8N612 972 aaPredicted RBP11.46□□□□□ -0.57
CSDE1-210ENST00000525878 FMNL1O95466 1100 aaPredicted RBP11.45□□□□□ -0.58
CSDE1-210ENST00000525878 BRICD5Q6PL45 260 aa11.45□□□□□ -0.58
CSDE1-210ENST00000525878 CCDC102AQ96A19 550 aa11.44□□□□□ -0.58
CSDE1-210ENST00000525878 GDF9O60383 454 aa11.43□□□□□ -0.58
CSDE1-210ENST00000525878 ZNF697Q5TEC3 545 aa11.43□□□□□ -0.58
CSDE1-210ENST00000525878 GRIPAP1Q4V328 841 aa11.42□□□□□ -0.58
CSDE1-210ENST00000525878 MDM2Q00987 491 aaPredicted RBP11.41□□□□□ -0.58
CSDE1-210ENST00000525878 RNF19BQ6ZMZ0 732 aa11.41□□□□□ -0.58
CSDE1-210ENST00000525878 MSS51Q4VC12 460 aa11.4□□□□□ -0.58
CSDE1-210ENST00000525878 KDM4AO75164 1064 aa11.38□□□□□ -0.59
CSDE1-210ENST00000525878 RPIAP49247 311 aa11.38□□□□□ -0.59
CSDE1-210ENST00000525878 PRDM9Q9NQV7 894 aa11.38□□□□□ -0.59
CSDE1-210ENST00000525878 FCF1Q9Y324 198 aaKnown RBP11.38□□□□□ -0.59
CSDE1-210ENST00000525878 DGAT1O75907 488 aa11.36□□□□□ -0.59
CSDE1-210ENST00000525878 LMOD2Q6P5Q4 547 aa11.36□□□□□ -0.59
CSDE1-210ENST00000525878 GPCPD1Q9NPB8 672 aa11.36□□□□□ -0.59
CSDE1-210ENST00000525878 FAM217BQ9NTX9 383 aaPredicted RBP11.36□□□□□ -0.59
CSDE1-210ENST00000525878 CLCN1P35523 988 aa11.35□□□□□ -0.59
CSDE1-210ENST00000525878 USP46P62068 366 aa11.35□□□□□ -0.59
CSDE1-210ENST00000525878 Q3C1V9 767 aa11.35□□□□□ -0.59
CSDE1-210ENST00000525878 PKD2L1Q9P0L9 805 aa11.35□□□□□ -0.59
CSDE1-210ENST00000525878 TNFRSF10AO00220 468 aa11.34□□□□□ -0.59
CSDE1-210ENST00000525878 MMP16P51512 607 aa11.33□□□□□ -0.6
CSDE1-210ENST00000525878 HOXA2O43364 376 aa11.32□□□□□ -0.6
CSDE1-210ENST00000525878 MYT1Q01538 1121 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms