RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 METTL3Q86U44 580 aaKnown RBP5.11□□□□□ -1.59
CD44-212ENST00000524922 RBM46Q8TBY0 533 aaKnown RBP5.11□□□□□ -1.59
CD44-212ENST00000524922 RNF40O75150 1001 aa5.1□□□□□ -1.59
CD44-212ENST00000524922 ZPR1O75312 459 aa5.1□□□□□ -1.59
CD44-212ENST00000524922 PHOX2BQ99453 314 aa5.1□□□□□ -1.59
CD44-212ENST00000524922 ACTN4O43707 911 aaKnown RBP5.09□□□□□ -1.59
CD44-212ENST00000524922 HDGFP51858 240 aaKnown RBP5.09□□□□□ -1.59
CD44-212ENST00000524922 COPS2P61201 443 aa5.09□□□□□ -1.59
CD44-212ENST00000524922 BLOC1S3Q6QNY0 202 aa5.09□□□□□ -1.59
CD44-212ENST00000524922 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.09□□□□□ -1.59
CD44-212ENST00000524922 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.08□□□□□ -1.6
CD44-212ENST00000524922 GNPATO15228 680 aa5.08□□□□□ -1.6
CD44-212ENST00000524922 NECTIN2Q92692 538 aa5.08□□□□□ -1.6
CD44-212ENST00000524922 TLL1O43897 1013 aa5.07□□□□□ -1.6
CD44-212ENST00000524922 PRKD2Q9BZL6 878 aa5.07□□□□□ -1.6
CD44-212ENST00000524922 PCDHB3Q9Y5E6 796 aa5.07□□□□□ -1.6
CD44-212ENST00000524922 V9GY48 417 aaPredicted RBP5.07□□□□□ -1.6
CD44-212ENST00000524922 OATP04181 439 aa5.06□□□□□ -1.6
CD44-212ENST00000524922 CFHP08603 1231 aa5.06□□□□□ -1.6
CD44-212ENST00000524922 TRIM67Q6ZTA4 783 aa5.06□□□□□ -1.6
CD44-212ENST00000524922 RNF223E7ERA6 249 aa5.05□□□□□ -1.6
CD44-212ENST00000524922 NLRP7Q8WX94 980 aa5.05□□□□□ -1.6
CD44-212ENST00000524922 TMUB1Q9BVT8 246 aa5.05□□□□□ -1.6
CD44-212ENST00000524922 PRR14Q9BWN1 585 aa5.05□□□□□ -1.6
CD44-212ENST00000524922 HAP1P54257 671 aaPredicted RBP5.03□□□□□ -1.6
CD44-212ENST00000524922 PLA2G2CQ5R387 149 aa5.03□□□□□ -1.6
CD44-212ENST00000524922 THAP11Q96EK4 314 aa5.03□□□□□ -1.6
CD44-212ENST00000524922 DAXXQ9UER7 740 aaPredicted RBP5.03□□□□□ -1.6
CD44-212ENST00000524922 KMT5BQ4FZB7 885 aa5.02□□□□□ -1.61
CD44-212ENST00000524922 SMYD5Q6GMV2 418 aa5.02□□□□□ -1.61
CD44-212ENST00000524922 SCUBE3Q8IX30 993 aa5.02□□□□□ -1.61
CD44-212ENST00000524922 NRG2O14511 850 aaPredicted RBP5.01□□□□□ -1.61
CD44-212ENST00000524922 PPEF1O14829 653 aaPredicted RBP5.01□□□□□ -1.61
CD44-212ENST00000524922 GFRA3O60609 400 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 S1PR4O95977 384 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 ADH1BP00325 375 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 SLC4A3P48751 1232 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 LAPTM4AQ15012 233 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 PUS10Q3MIT2 529 aaKnown RBP5.01□□□□□ -1.61
CD44-212ENST00000524922 MORN1Q5T089 497 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 Q6ZNB5 142 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 LIAT1Q6ZQX7 453 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 VSIG10Q8N0Z9 540 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 ANKLE1Q8NAG6 615 aa5.01□□□□□ -1.61
CD44-212ENST00000524922 GCGRP47871 477 aa5□□□□□ -1.61
CD44-212ENST00000524922 GPIHBP1Q8IV16 184 aa5□□□□□ -1.61
CD44-212ENST00000524922 GGCXP38435 758 aa4.99□□□□□ -1.61
CD44-212ENST00000524922 FUT2Q10981 343 aa4.99□□□□□ -1.61
CD44-212ENST00000524922 SPRYD7Q5W111 196 aa4.99□□□□□ -1.61
CD44-212ENST00000524922 FAM160A2Q8N612 972 aaPredicted RBP4.99□□□□□ -1.61
CD44-212ENST00000524922 IRF6O14896 467 aa4.98□□□□□ -1.61
CD44-212ENST00000524922 NR1I2O75469 434 aa4.98□□□□□ -1.61
CD44-212ENST00000524922 SLC19A1P41440 591 aa4.98□□□□□ -1.61
CD44-212ENST00000524922 MAP2K5Q13163 448 aa4.98□□□□□ -1.61
CD44-212ENST00000524922 TRAF7Q6Q0C0 670 aa4.98□□□□□ -1.61
CD44-212ENST00000524922 DDX11L8A8MPP1 907 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 GDF9O60383 454 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 CD46P15529 392 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 PRR20EP86478 221 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 PRR20CP86479 221 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 PRR20DP86480 221 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 PRR20BP86481 221 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 PRR20AP86496 221 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 BRICD5Q6PL45 260 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 ZNF598Q86UK7 904 aaKnown RBP4.97□□□□□ -1.61
CD44-212ENST00000524922 PDZRN3Q9UPQ7 1066 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 SLC27A5Q9Y2P5 690 aa4.97□□□□□ -1.61
CD44-212ENST00000524922 SALL2Q9Y467 1007 aaPredicted RBP4.97□□□□□ -1.61
CD44-212ENST00000524922 ATP6V1AP38606 617 aa4.96□□□□□ -1.62
CD44-212ENST00000524922 SPSB2Q99619 263 aa4.96□□□□□ -1.62
CD44-212ENST00000524922 SLC6A16Q9GZN6 736 aa4.96□□□□□ -1.62
CD44-212ENST00000524922 RNF19BQ6ZMZ0 732 aa4.95□□□□□ -1.62
CD44-212ENST00000524922 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.95□□□□□ -1.62
CD44-212ENST00000524922 RDH13Q8NBN7 331 aa4.95□□□□□ -1.62
CD44-212ENST00000524922 PRDM9Q9NQV7 894 aa4.95□□□□□ -1.62
CD44-212ENST00000524922 PKD2L1Q9P0L9 805 aa4.95□□□□□ -1.62
CD44-212ENST00000524922 SULF1Q8IWU6 871 aa4.94□□□□□ -1.62
CD44-212ENST00000524922 CCDC102AQ96A19 550 aa4.94□□□□□ -1.62
CD44-212ENST00000524922 REPIN1Q9BWE0 567 aaKnown RBP4.94□□□□□ -1.62
CD44-212ENST00000524922 MINK1Q8N4C8 1332 aaPredicted RBP4.94□□□□□ -1.62
CD44-212ENST00000524922 RSPH4AQ5TD94 716 aa4.93□□□□□ -1.62
CD44-212ENST00000524922 ZNF697Q5TEC3 545 aa4.93□□□□□ -1.62
CD44-212ENST00000524922 HLA-CQ95604 372 aa4.93□□□□□ -1.62
CD44-212ENST00000524922 MYT1Q01538 1121 aa4.92□□□□□ -1.62
CD44-212ENST00000524922 MSS51Q4VC12 460 aa4.92□□□□□ -1.62
CD44-212ENST00000524922 FCF1Q9Y324 198 aaKnown RBP4.92□□□□□ -1.62
CD44-212ENST00000524922 FMNL1O95466 1100 aaPredicted RBP4.91□□□□□ -1.62
CD44-212ENST00000524922 MMP16P51512 607 aa4.91□□□□□ -1.62
CD44-212ENST00000524922 MDM2Q00987 491 aaPredicted RBP4.91□□□□□ -1.62
CD44-212ENST00000524922 FAM217BQ9NTX9 383 aaPredicted RBP4.91□□□□□ -1.62
CD44-212ENST00000524922 TNFRSF10AO00220 468 aa4.9□□□□□ -1.63
CD44-212ENST00000524922 KDM4AO75164 1064 aa4.9□□□□□ -1.63
CD44-212ENST00000524922 RPIAP49247 311 aa4.9□□□□□ -1.63
CD44-212ENST00000524922 TOR4AQ9NXH8 423 aa4.9□□□□□ -1.63
CD44-212ENST00000524922 POTECB2RU33 542 aa4.89□□□□□ -1.63
CD44-212ENST00000524922 HOXA2O43364 376 aa4.89□□□□□ -1.63
CD44-212ENST00000524922 ZMYND10O75800 440 aa4.89□□□□□ -1.63
CD44-212ENST00000524922 DGAT1O75907 488 aa4.89□□□□□ -1.63
CD44-212ENST00000524922 DXOO77932 396 aaKnown RBP4.89□□□□□ -1.63
CD44-212ENST00000524922 GUCA2AQ02747 115 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms