RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 PPP1R15AO75807 674 aaPredicted RBP40.17■■■■■ 4.02
PVT1-219ENST00000523427 CHGAP10645 457 aaKnown RBP40.14■■■■■ 4.02
PVT1-219ENST00000523427 ROBO1Q9Y6N7 1651 aa40.11■■■■■ 4.01
PVT1-219ENST00000523427 MSH6P52701 1360 aa40.1■■■■■ 4.01
PVT1-219ENST00000523427 RIMS2Q9UQ26 1411 aa40.08■■■■■ 4.01
PVT1-219ENST00000523427 NKTRP30414 1462 aaKnown RBP40.07■■■■■ 4.01
PVT1-219ENST00000523427 HDGFP51858 240 aaKnown RBP40.07■■■■■ 4.01
PVT1-219ENST00000523427 NUTM2DQ5VT03 806 aaPredicted RBP40.07■■■■■ 4.01
PVT1-219ENST00000523427 RPRD2Q5VT52 1461 aaKnown RBP40.07■■■■■ 4
PVT1-219ENST00000523427 POTEAQ6S8J7 498 aa40.06■■■■■ 4
PVT1-219ENST00000523427 SLAIN2Q9P270 581 aa40.06■■■■■ 4
PVT1-219ENST00000523427 PLEKHG1Q9ULL1 1385 aa40.04■■■■■ 4
PVT1-219ENST00000523427 NWD1Q149M9 1564 aa40.04■■■■■ 4
PVT1-219ENST00000523427 ZFYVE9O95405 1425 aa40.03■■■■■ 4
PVT1-219ENST00000523427 MYO5BQ9ULV0 1848 aa40.01■■■■■ 4
PVT1-219ENST00000523427 C14orf37Q86TY3 774 aa40.01■■■■■ 4
PVT1-219ENST00000523427 GCC2Q8IWJ2 1684 aa39.99■■■■□ 3.99
PVT1-219ENST00000523427 TMEM131LA2VDJ0 1609 aa39.94■■■■□ 3.99
PVT1-219ENST00000523427 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.94■■■■□ 3.98
PVT1-219ENST00000523427 TBX22Q9Y458 520 aa39.94■■■■□ 3.98
PVT1-219ENST00000523427 ITGAEP38570 1179 aa39.91■■■■□ 3.98
PVT1-219ENST00000523427 CHD2O14647 1828 aaKnown RBP39.91■■■■□ 3.98
PVT1-219ENST00000523427 PHLPP1O60346 1717 aa39.89■■■■□ 3.98
PVT1-219ENST00000523427 JCADQ9P266 1359 aa39.87■■■■□ 3.97
PVT1-219ENST00000523427 UNC13BO14795 1591 aa39.86■■■■□ 3.97
PVT1-219ENST00000523427 E9PCH4 1651 aa39.83■■■■□ 3.97
PVT1-219ENST00000523427 ADAMTS13Q76LX8 1427 aa39.82■■■■□ 3.96
PVT1-219ENST00000523427 NUP155O75694 1391 aa39.81■■■■□ 3.96
PVT1-219ENST00000523427 ATF3P18847 181 aa39.8■■■■□ 3.96
PVT1-219ENST00000523427 PPARGC1BQ86YN6 1023 aaKnown RBP39.78■■■■□ 3.96
PVT1-219ENST00000523427 C19orf44Q9H6X5 657 aa39.77■■■■□ 3.96
PVT1-219ENST00000523427 ROCK1Q13464 1354 aa39.76■■■■□ 3.96
PVT1-219ENST00000523427 CADPS2Q86UW7 1296 aa39.76■■■■□ 3.96
PVT1-219ENST00000523427 MEX3CQ5U5Q3 659 aaKnown RBP39.75■■■■□ 3.95
PVT1-219ENST00000523427 AMOTL2Q9Y2J4 779 aa39.75■■■■□ 3.95
PVT1-219ENST00000523427 NCOA3Q9Y6Q9 1424 aa39.74■■■■□ 3.95
PVT1-219ENST00000523427 IQGAP3Q86VI3 1631 aa39.72■■■■□ 3.95
PVT1-219ENST00000523427 COL16A1Q07092 1604 aaPredicted RBP39.71■■■■□ 3.95
PVT1-219ENST00000523427 PIK3R4Q99570 1358 aa39.7■■■■□ 3.95
PVT1-219ENST00000523427 SIPA1L2Q9P2F8 1722 aaPredicted RBP39.68■■■■□ 3.94
PVT1-219ENST00000523427 DIP2AQ14689 1571 aa39.67■■■■□ 3.94
PVT1-219ENST00000523427 ZNF326Q5BKZ1 582 aaKnown RBP39.66■■■■□ 3.94
PVT1-219ENST00000523427 PTPRUQ92729 1446 aa39.65■■■■□ 3.94
PVT1-219ENST00000523427 SETD1AO15047 1707 aaKnown RBP39.65■■■■□ 3.94
PVT1-219ENST00000523427 SPATA31A6Q5VVP1 1343 aa39.65■■■■□ 3.94
PVT1-219ENST00000523427 LRP6O75581 1613 aa39.64■■■■□ 3.94
PVT1-219ENST00000523427 TRPM2O94759 1503 aa39.64■■■■□ 3.94
PVT1-219ENST00000523427 BRINP3Q76B58 766 aa39.61■■■■□ 3.93
PVT1-219ENST00000523427 NUTM2BA6NNL0 878 aaPredicted RBP39.6■■■■□ 3.93
PVT1-219ENST00000523427 NUTM2EB1AL46 878 aaPredicted RBP39.6■■■■□ 3.93
PVT1-219ENST00000523427 NUTM2AQ8IVF1 878 aaPredicted RBP39.6■■■■□ 3.93
PVT1-219ENST00000523427 TRIM52Q96A61 297 aa39.59■■■■□ 3.93
PVT1-219ENST00000523427 ZNF772Q68DY9 489 aaPredicted RBP39.56■■■■□ 3.92
PVT1-219ENST00000523427 AHDC1Q5TGY3 1603 aaPredicted RBP39.55■■■■□ 3.92
PVT1-219ENST00000523427 METP08581 1390 aa39.48■■■■□ 3.91
PVT1-219ENST00000523427 NRXN3Q9Y4C0 1643 aa39.46■■■■□ 3.91
PVT1-219ENST00000523427 SHPRHQ149N8 1683 aa39.45■■■■□ 3.91
PVT1-219ENST00000523427 SPHKAPQ2M3C7 1700 aa39.45■■■■□ 3.91
PVT1-219ENST00000523427 SETBP1Q9Y6X0 1596 aa39.43■■■■□ 3.9
PVT1-219ENST00000523427 DDX17Q92841 729 aaKnown RBP39.43■■■■□ 3.9
PVT1-219ENST00000523427 DCCP43146 1447 aa39.42■■■■□ 3.9
PVT1-219ENST00000523427 ASXL1Q8IXJ9 1541 aa39.42■■■■□ 3.9
PVT1-219ENST00000523427 XRN1Q8IZH2 1706 aaKnown RBP39.42■■■■□ 3.9
PVT1-219ENST00000523427 RXRBP28702 533 aa39.41■■■■□ 3.9
PVT1-219ENST00000523427 MST1RQ04912 1400 aa39.4■■■■□ 3.9
PVT1-219ENST00000523427 UPF1Q92900 1129 aaKnown RBP eCLIP39.38■■■■□ 3.89
PVT1-219ENST00000523427 AFF2P51816 1311 aa39.36■■■■□ 3.89
PVT1-219ENST00000523427 LRRC59Q96AG4 307 aaKnown RBP39.35■■■■□ 3.89
PVT1-219ENST00000523427 CLTCL1P53675 1640 aa39.32■■■■□ 3.88
PVT1-219ENST00000523427 SETD5Q9C0A6 1442 aa39.31■■■■□ 3.88
PVT1-219ENST00000523427 C8orf37Q96NL8 207 aa39.31■■■■□ 3.88
PVT1-219ENST00000523427 ADGRL3Q9HAR2 1447 aa39.31■■■■□ 3.88
PVT1-219ENST00000523427 NEXMIFQ5QGS0 1516 aa39.29■■■■□ 3.88
PVT1-219ENST00000523427 NHSL1Q5SYE7 1610 aa39.25■■■■□ 3.87
PVT1-219ENST00000523427 PNPLA6Q8IY17 1366 aa39.21■■■■□ 3.87
PVT1-219ENST00000523427 ADAMTS2O95450 1211 aa39.21■■■■□ 3.87
PVT1-219ENST00000523427 NALCNQ8IZF0 1738 aa39.2■■■■□ 3.87
PVT1-219ENST00000523427 QTRT2Q9H974 415 aaKnown RBP39.2■■■■□ 3.87
PVT1-219ENST00000523427 NAIPQ13075 1403 aa39.2■■■■□ 3.87
PVT1-219ENST00000523427 VGFO15240 615 aaPredicted RBP39.19■■■■□ 3.86
PVT1-219ENST00000523427 KIF1BO60333 1816 aa39.18■■■■□ 3.86
PVT1-219ENST00000523427 ORAI2Q96SN7 254 aa39.17■■■■□ 3.86
PVT1-219ENST00000523427 C1orf167Q5SNV9 1468 aa39.17■■■■□ 3.86
PVT1-219ENST00000523427 NGLY1Q96IV0 654 aa39.16■■■■□ 3.86
PVT1-219ENST00000523427 ROBO2Q9HCK4 1378 aa39.15■■■■□ 3.86
PVT1-219ENST00000523427 CDK12Q9NYV4 1490 aaPredicted RBP39.12■■■■□ 3.85
PVT1-219ENST00000523427 RBM6P78332 1123 aaKnown RBP39.12■■■■□ 3.85
PVT1-219ENST00000523427 SLC4A1APQ9BWU0 796 aaKnown RBP39.12■■■■□ 3.85
PVT1-219ENST00000523427 RRBP1Q9P2E9 1410 aaKnown RBP39.12■■■■□ 3.85
PVT1-219ENST00000523427 PTCH1Q13635 1447 aa39.07■■■■□ 3.85
PVT1-219ENST00000523427 RGS12O14924 1447 aa39.06■■■■□ 3.84
PVT1-219ENST00000523427 RPGRIP1LQ68CZ1 1315 aa39.04■■■■□ 3.84
PVT1-219ENST00000523427 FOXD1Q16676 465 aa39.03■■■■□ 3.84
PVT1-219ENST00000523427 SOS2Q07890 1332 aaPredicted RBP39.03■■■■□ 3.84
PVT1-219ENST00000523427 USP21Q9UK80 565 aa39■■■■□ 3.83
PVT1-219ENST00000523427 ESCO1Q5FWF5 840 aa38.97■■■■□ 3.83
PVT1-219ENST00000523427 HFM1A2PYH4 1435 aa38.96■■■■□ 3.83
PVT1-219ENST00000523427 STK26Q9P289 416 aa38.95■■■■□ 3.83
PVT1-219ENST00000523427 RGL3Q3MIN7 710 aa38.94■■■■□ 3.82
PVT1-219ENST00000523427 NUTM2FA1L443 756 aa38.93■■■■□ 3.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms