RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 LMOD2Q6P5Q4 547 aa11.09□□□□□ -0.63
NIPBL-206ENST00000509429 PPEF1O14829 653 aaPredicted RBP11.08□□□□□ -0.64
NIPBL-206ENST00000509429 EN1Q05925 392 aaPredicted RBP11.08□□□□□ -0.64
NIPBL-206ENST00000509429 MAP3K7O43318 606 aa11.06□□□□□ -0.64
NIPBL-206ENST00000509429 DDX12PQ92771 950 aa11.06□□□□□ -0.64
NIPBL-206ENST00000509429 SMCPP49901 116 aaPredicted RBP11.05□□□□□ -0.64
NIPBL-206ENST00000509429 PKD2L1Q9P0L9 805 aa11.05□□□□□ -0.64
NIPBL-206ENST00000509429 SLF2Q8IX21 1173 aa11.04□□□□□ -0.64
NIPBL-206ENST00000509429 ZSCAN1Q8NBB4 408 aa11.04□□□□□ -0.64
NIPBL-206ENST00000509429 PCDHB3Q9Y5E6 796 aa11.04□□□□□ -0.64
NIPBL-206ENST00000509429 FOXC1Q12948 553 aa11.03□□□□□ -0.64
NIPBL-206ENST00000509429 NKX1-1Q15270 411 aaPredicted RBP11.03□□□□□ -0.64
NIPBL-206ENST00000509429 S1PR4O95977 384 aa11.02□□□□□ -0.65
NIPBL-206ENST00000509429 PRR14Q9BWN1 585 aa11.02□□□□□ -0.65
NIPBL-206ENST00000509429 CERKQ8TCT0 537 aa11.01□□□□□ -0.65
NIPBL-206ENST00000509429 SNRPBP14678 240 aaKnown RBP11□□□□□ -0.65
NIPBL-206ENST00000509429 LORP23490 312 aaPredicted RBP11□□□□□ -0.65
NIPBL-206ENST00000509429 NBR1Q14596 966 aa11□□□□□ -0.65
NIPBL-206ENST00000509429 BLOC1S3Q6QNY0 202 aa11□□□□□ -0.65
NIPBL-206ENST00000509429 NUDT18Q6ZVK8 323 aa11□□□□□ -0.65
NIPBL-206ENST00000509429 DNAJC5Q9H3Z4 198 aa11□□□□□ -0.65
NIPBL-206ENST00000509429 TLL1O43897 1013 aa10.99□□□□□ -0.65
NIPBL-206ENST00000509429 TOR4AQ9NXH8 423 aa10.99□□□□□ -0.65
NIPBL-206ENST00000509429 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
NIPBL-206ENST00000509429 DPYSL4O14531 572 aa10.96□□□□□ -0.65
NIPBL-206ENST00000509429 CHGAP10645 457 aaKnown RBP10.95□□□□□ -0.66
NIPBL-206ENST00000509429 SLC4A3P48751 1232 aa10.95□□□□□ -0.66
NIPBL-206ENST00000509429 PLA2G2CQ5R387 149 aa10.95□□□□□ -0.66
NIPBL-206ENST00000509429 SLC16A10Q8TF71 515 aa10.94□□□□□ -0.66
NIPBL-206ENST00000509429 TRIM47Q96LD4 638 aa10.94□□□□□ -0.66
NIPBL-206ENST00000509429 CYP4X1Q8N118 509 aa10.93□□□□□ -0.66
NIPBL-206ENST00000509429 SENP2Q9HC62 589 aa10.93□□□□□ -0.66
NIPBL-206ENST00000509429 ATP13A2Q9NQ11 1180 aa10.93□□□□□ -0.66
NIPBL-206ENST00000509429 CAMK2BQ13554 666 aa10.91□□□□□ -0.66
NIPBL-206ENST00000509429 GMPRP36959 345 aa10.9□□□□□ -0.66
NIPBL-206ENST00000509429 ADH1BP00325 375 aa10.87□□□□□ -0.67
NIPBL-206ENST00000509429 RBM27Q9P2N5 1060 aaKnown RBP10.87□□□□□ -0.67
NIPBL-206ENST00000509429 KCTD17Q8N5Z5 321 aa10.86□□□□□ -0.67
NIPBL-206ENST00000509429 SLC6A16Q9GZN6 736 aa10.85□□□□□ -0.67
NIPBL-206ENST00000509429 RPIAP49247 311 aa10.84□□□□□ -0.67
NIPBL-206ENST00000509429 KIFC2Q96AC6 838 aa10.84□□□□□ -0.67
NIPBL-206ENST00000509429 IRF7Q92985 503 aa10.83□□□□□ -0.68
NIPBL-206ENST00000509429 NXF1Q9UBU9 619 aaKnown RBP10.82□□□□□ -0.68
NIPBL-206ENST00000509429 CD2BP2O95400 341 aaKnown RBP10.81□□□□□ -0.68
NIPBL-206ENST00000509429 TTC24A2A3L6 582 aaPredicted RBP10.8□□□□□ -0.68
NIPBL-206ENST00000509429 ACTN4O43707 911 aaKnown RBP10.79□□□□□ -0.68
NIPBL-206ENST00000509429 KCNMA1Q12791 1236 aa10.79□□□□□ -0.68
NIPBL-206ENST00000509429 NPAS3Q8IXF0 933 aa10.78□□□□□ -0.68
NIPBL-206ENST00000509429 TTC13Q8NBP0 860 aa10.77□□□□□ -0.69
NIPBL-206ENST00000509429 PRIM1P49642 420 aaKnown RBP10.76□□□□□ -0.69
NIPBL-206ENST00000509429 GTPBP6O43824 516 aaPredicted RBP10.75□□□□□ -0.69
NIPBL-206ENST00000509429 NR1I2O75469 434 aa10.75□□□□□ -0.69
NIPBL-206ENST00000509429 PDIA6Q15084 440 aa10.75□□□□□ -0.69
NIPBL-206ENST00000509429 KMT5BQ4FZB7 885 aa10.75□□□□□ -0.69
NIPBL-206ENST00000509429 SMPD1P17405 629 aa10.73□□□□□ -0.69
NIPBL-206ENST00000509429 GSK3AP49840 483 aa10.73□□□□□ -0.69
NIPBL-206ENST00000509429 EYA1Q99502 592 aa10.72□□□□□ -0.69
NIPBL-206ENST00000509429 CDHR5Q9HBB8 845 aa10.72□□□□□ -0.69
NIPBL-206ENST00000509429 SPDYE16A6NNV3 312 aaPredicted RBP10.7□□□□□ -0.7
NIPBL-206ENST00000509429 CADPS2Q86UW7 1296 aa10.7□□□□□ -0.7
NIPBL-206ENST00000509429 XP32Q5T750 250 aa10.69□□□□□ -0.7
NIPBL-206ENST00000509429 SNIP1Q8TAD8 396 aaKnown RBP10.69□□□□□ -0.7
NIPBL-206ENST00000509429 H3BM21 787 aa10.68□□□□□ -0.7
NIPBL-206ENST00000509429 PADI6Q6TGC4 694 aa10.68□□□□□ -0.7
NIPBL-206ENST00000509429 TMEM151AQ8N4L1 468 aa10.68□□□□□ -0.7
NIPBL-206ENST00000509429 ERBB4Q15303 1308 aa10.65□□□□□ -0.7
NIPBL-206ENST00000509429 VEGFBP49765 207 aa10.65□□□□□ -0.7
NIPBL-206ENST00000509429 SCUBE3Q8IX30 993 aa10.65□□□□□ -0.7
NIPBL-206ENST00000509429 SPSB2Q99619 263 aa10.65□□□□□ -0.7
NIPBL-206ENST00000509429 KRTAP4-8Q9BYQ9 185 aa10.65□□□□□ -0.7
NIPBL-206ENST00000509429 CFHP08603 1231 aa10.64□□□□□ -0.71
NIPBL-206ENST00000509429 GRXCR2A6NFK2 248 aa10.63□□□□□ -0.71
NIPBL-206ENST00000509429 GDF11O95390 407 aa10.63□□□□□ -0.71
NIPBL-206ENST00000509429 FCF1Q9Y324 198 aaKnown RBP10.63□□□□□ -0.71
NIPBL-206ENST00000509429 WNT7AO00755 349 aa10.62□□□□□ -0.71
NIPBL-206ENST00000509429 J3QL48 77 aa10.61□□□□□ -0.71
NIPBL-206ENST00000509429 HPS1Q92902 700 aa10.61□□□□□ -0.71
NIPBL-206ENST00000509429 DNAJB2P25686 324 aa10.6□□□□□ -0.71
NIPBL-206ENST00000509429 RASSF7Q02833 373 aa10.6□□□□□ -0.71
NIPBL-206ENST00000509429 OSBPP22059 807 aa10.59□□□□□ -0.71
NIPBL-206ENST00000509429 NPDC1Q9NQX5 325 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-206ENST00000509429 TMEM134Q9H6X4 195 aa10.57□□□□□ -0.72
NIPBL-206ENST00000509429 ZBTB24O43167 697 aaPredicted RBP10.56□□□□□ -0.72
NIPBL-206ENST00000509429 MRGPRX2Q96LB1 330 aa10.54□□□□□ -0.72
NIPBL-206ENST00000509429 SLC10A3P09131 477 aa10.51□□□□□ -0.73
NIPBL-206ENST00000509429 RNF225M0QZC1 329 aaPredicted RBP10.5□□□□□ -0.73
NIPBL-206ENST00000509429 IGHA1P01876 353 aa10.5□□□□□ -0.73
NIPBL-206ENST00000509429 PUS10Q3MIT2 529 aaKnown RBP10.5□□□□□ -0.73
NIPBL-206ENST00000509429 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.49□□□□□ -0.73
NIPBL-206ENST00000509429 RBM46Q8TBY0 533 aaKnown RBP10.47□□□□□ -0.73
NIPBL-206ENST00000509429 VSIG8P0DPA2 414 aa10.46□□□□□ -0.73
NIPBL-206ENST00000509429 GPAT2Q6NUI2 795 aa10.46□□□□□ -0.73
NIPBL-206ENST00000509429 REPIN1Q9BWE0 567 aaKnown RBP10.46□□□□□ -0.73
NIPBL-206ENST00000509429 KRTAP9-2Q9BYQ4 174 aa10.46□□□□□ -0.73
NIPBL-206ENST00000509429 TRIM46Q7Z4K8 759 aa10.45□□□□□ -0.74
NIPBL-206ENST00000509429 FAM160A2Q8N612 972 aaPredicted RBP10.45□□□□□ -0.74
NIPBL-206ENST00000509429 TRIM32Q13049 653 aa10.44□□□□□ -0.74
NIPBL-206ENST00000509429 THAP11Q96EK4 314 aa10.44□□□□□ -0.74
NIPBL-206ENST00000509429 BMP1P13497 986 aa10.43□□□□□ -0.74
NIPBL-206ENST00000509429 RCCD1A6NED2 376 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms