RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PTGDRQ13258 359 aa9.76□□□□□ -0.85
NUP54-206ENST00000508465 KMT5BQ4FZB7 885 aa9.76□□□□□ -0.85
NUP54-206ENST00000508465 NUTM2FA1L443 756 aa9.74□□□□□ -0.85
NUP54-206ENST00000508465 BLOC1S3Q6QNY0 202 aa9.74□□□□□ -0.85
NUP54-206ENST00000508465 TMEM134Q9H6X4 195 aa9.74□□□□□ -0.85
NUP54-206ENST00000508465 SLC19A1P41440 591 aa9.73□□□□□ -0.85
NUP54-206ENST00000508465 KCNV2Q8TDN2 545 aa9.73□□□□□ -0.85
NUP54-206ENST00000508465 TSHZ2Q9NRE2 1034 aa9.72□□□□□ -0.85
NUP54-206ENST00000508465 ADGRG1Q9Y653 693 aa9.72□□□□□ -0.85
NUP54-206ENST00000508465 RNF223E7ERA6 249 aa9.71□□□□□ -0.86
NUP54-206ENST00000508465 ACTN4O43707 911 aaKnown RBP9.71□□□□□ -0.86
NUP54-206ENST00000508465 ZNF787Q6DD87 383 aa9.71□□□□□ -0.86
NUP54-206ENST00000508465 RCCD1A6NED2 376 aa9.7□□□□□ -0.86
NUP54-206ENST00000508465 FCHSD2O94868 740 aa9.68□□□□□ -0.86
NUP54-206ENST00000508465 CFHP08603 1231 aa9.68□□□□□ -0.86
NUP54-206ENST00000508465 RSPH4AQ5TD94 716 aa9.68□□□□□ -0.86
NUP54-206ENST00000508465 P3H3Q8IVL6 736 aa9.68□□□□□ -0.86
NUP54-206ENST00000508465 ANKLE1Q8NAG6 615 aa9.68□□□□□ -0.86
NUP54-206ENST00000508465 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.67□□□□□ -0.86
NUP54-206ENST00000508465 NR1I2O75469 434 aa9.67□□□□□ -0.86
NUP54-206ENST00000508465 OATP04181 439 aa9.67□□□□□ -0.86
NUP54-206ENST00000508465 SPRYD7Q5W111 196 aa9.67□□□□□ -0.86
NUP54-206ENST00000508465 PKDCCQ504Y2 493 aa9.66□□□□□ -0.86
NUP54-206ENST00000508465 ZNF598Q86UK7 904 aaKnown RBP9.66□□□□□ -0.86
NUP54-206ENST00000508465 TLL1O43897 1013 aa9.65□□□□□ -0.86
NUP54-206ENST00000508465 FAM161AQ3B820 660 aa9.65□□□□□ -0.86
NUP54-206ENST00000508465 S1PR4O95977 384 aa9.64□□□□□ -0.87
NUP54-206ENST00000508465 PPEF1O14829 653 aaPredicted RBP9.63□□□□□ -0.87
NUP54-206ENST00000508465 DGAT1O75907 488 aa9.63□□□□□ -0.87
NUP54-206ENST00000508465 ADH1BP00325 375 aa9.63□□□□□ -0.87
NUP54-206ENST00000508465 SLC10A3P09131 477 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 PRR20EP86478 221 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 PRR20CP86479 221 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 PRR20DP86480 221 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 PRR20BP86481 221 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 PRR20AP86496 221 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 TRIM67Q6ZTA4 783 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 SLC6A16Q9GZN6 736 aa9.62□□□□□ -0.87
NUP54-206ENST00000508465 ZNF697Q5TEC3 545 aa9.61□□□□□ -0.87
NUP54-206ENST00000508465 ABCC9O60706 1549 aa9.61□□□□□ -0.87
NUP54-206ENST00000508465 SEMA3EO15041 775 aa9.6□□□□□ -0.87
NUP54-206ENST00000508465 LIAT1Q6ZQX7 453 aa9.6□□□□□ -0.87
NUP54-206ENST00000508465 SCUBE3Q8IX30 993 aa9.6□□□□□ -0.87
NUP54-206ENST00000508465 PXYLP1Q8TE99 480 aa9.6□□□□□ -0.87
NUP54-206ENST00000508465 EMID1Q96A84 441 aaPredicted RBP9.6□□□□□ -0.87
NUP54-206ENST00000508465 HIC1Q14526 733 aa9.59□□□□□ -0.87
NUP54-206ENST00000508465 MYT1Q01538 1121 aa9.58□□□□□ -0.88
NUP54-206ENST00000508465 SMYD5Q6GMV2 418 aa9.58□□□□□ -0.88
NUP54-206ENST00000508465 CCDC180Q9P1Z9 1646 aa9.56□□□□□ -0.88
NUP54-206ENST00000508465 ZNF775Q96BV0 537 aaPredicted RBP9.56□□□□□ -0.88
NUP54-206ENST00000508465 SPSB2Q99619 263 aa9.56□□□□□ -0.88
NUP54-206ENST00000508465 FAM187AA6NFU0 413 aa9.55□□□□□ -0.88
NUP54-206ENST00000508465 PUS10Q3MIT2 529 aaKnown RBP9.55□□□□□ -0.88
NUP54-206ENST00000508465 METTL3Q86U44 580 aaKnown RBP9.55□□□□□ -0.88
NUP54-206ENST00000508465 TNFRSF10AO00220 468 aa9.54□□□□□ -0.88
NUP54-206ENST00000508465 GDF9O60383 454 aa9.54□□□□□ -0.88
NUP54-206ENST00000508465 RDH13Q8NBN7 331 aa9.53□□□□□ -0.88
NUP54-206ENST00000508465 DAXXQ9UER7 740 aaPredicted RBP9.53□□□□□ -0.88
NUP54-206ENST00000508465 GNPATO15228 680 aa9.51□□□□□ -0.89
NUP54-206ENST00000508465 RBM26Q5T8P6 1007 aaKnown RBP9.51□□□□□ -0.89
NUP54-206ENST00000508465 LMOD2Q6P5Q4 547 aa9.51□□□□□ -0.89
NUP54-206ENST00000508465 PLA2G2CQ5R387 149 aa9.5□□□□□ -0.89
NUP54-206ENST00000508465 TESPA1A2RU30 521 aaPredicted RBP9.49□□□□□ -0.89
NUP54-206ENST00000508465 CD2BP2O95400 341 aaKnown RBP9.49□□□□□ -0.89
NUP54-206ENST00000508465 ATP6V1AP38606 617 aa9.49□□□□□ -0.89
NUP54-206ENST00000508465 RPIAP49247 311 aa9.49□□□□□ -0.89
NUP54-206ENST00000508465 FOXC1Q12948 553 aa9.49□□□□□ -0.89
NUP54-206ENST00000508465 DDX11L8A8MPP1 907 aa9.48□□□□□ -0.89
NUP54-206ENST00000508465 FMNL1O95466 1100 aaPredicted RBP9.48□□□□□ -0.89
NUP54-206ENST00000508465 SULF1Q8IWU6 871 aa9.48□□□□□ -0.89
NUP54-206ENST00000508465 MORN1Q5T089 497 aa9.47□□□□□ -0.89
NUP54-206ENST00000508465 FUT2Q10981 343 aa9.46□□□□□ -0.9
NUP54-206ENST00000508465 FECHP22830 423 aa9.45□□□□□ -0.9
NUP54-206ENST00000508465 GRIPAP1Q4V328 841 aa9.45□□□□□ -0.9
NUP54-206ENST00000508465 AAASQ9NRG9 546 aa9.45□□□□□ -0.9
NUP54-206ENST00000508465 PKD2L1Q9P0L9 805 aa9.45□□□□□ -0.9
NUP54-206ENST00000508465 FCF1Q9Y324 198 aaKnown RBP9.45□□□□□ -0.9
NUP54-206ENST00000508465 POTECB2RU33 542 aa9.44□□□□□ -0.9
NUP54-206ENST00000508465 GCGRP47871 477 aa9.44□□□□□ -0.9
NUP54-206ENST00000508465 THAP11Q96EK4 314 aa9.44□□□□□ -0.9
NUP54-206ENST00000508465 SALL2Q9Y467 1007 aaPredicted RBP9.44□□□□□ -0.9
NUP54-206ENST00000508465 ZBTB24O43167 697 aaPredicted RBP9.43□□□□□ -0.9
NUP54-206ENST00000508465 CYP4X1Q8N118 509 aa9.43□□□□□ -0.9
NUP54-206ENST00000508465 SLC27A5Q9Y2P5 690 aa9.43□□□□□ -0.9
NUP54-206ENST00000508465 ST8SIA5O15466 376 aa9.42□□□□□ -0.9
NUP54-206ENST00000508465 FAM160A2Q8N612 972 aaPredicted RBP9.41□□□□□ -0.9
NUP54-206ENST00000508465 CRIPAKQ8N1N5 446 aa9.4□□□□□ -0.9
NUP54-206ENST00000508465 GPR37O15354 613 aa9.39□□□□□ -0.91
NUP54-206ENST00000508465 BRICD5Q6PL45 260 aa9.39□□□□□ -0.91
NUP54-206ENST00000508465 NLRP7Q8WX94 980 aa9.39□□□□□ -0.91
NUP54-206ENST00000508465 TOR4AQ9NXH8 423 aa9.39□□□□□ -0.91
NUP54-206ENST00000508465 AXIN1O15169 862 aa9.38□□□□□ -0.91
NUP54-206ENST00000508465 CTC1Q2NKJ3 1217 aa9.38□□□□□ -0.91
NUP54-206ENST00000508465 TTC24A2A3L6 582 aaPredicted RBP9.37□□□□□ -0.91
NUP54-206ENST00000508465 AVPP01185 164 aa9.37□□□□□ -0.91
NUP54-206ENST00000508465 Q3C1V9 767 aa9.37□□□□□ -0.91
NUP54-206ENST00000508465 MSS51Q4VC12 460 aa9.37□□□□□ -0.91
NUP54-206ENST00000508465 TREML4Q6UXN2 200 aa9.37□□□□□ -0.91
NUP54-206ENST00000508465 GPIHBP1Q8IV16 184 aa9.37□□□□□ -0.91
NUP54-206ENST00000508465 PLCB2Q00722 1185 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms