RNA–Protein interactions for RNA: ENST00000506632.2

PDLIM5-209, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 907 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-209ENST00000506632 RIMS2Q9UQ26 1411 aa13.76□□□□□ -0.21
PDLIM5-209ENST00000506632 SPHKAPQ2M3C7 1700 aa13.76□□□□□ -0.21
PDLIM5-209ENST00000506632 PLEKHG1Q9ULL1 1385 aa13.75□□□□□ -0.21
PDLIM5-209ENST00000506632 XIRP1Q702N8 1843 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-209ENST00000506632 TOM1O60784 492 aa13.74□□□□□ -0.21
PDLIM5-209ENST00000506632 NWD1Q149M9 1564 aa13.74□□□□□ -0.21
PDLIM5-209ENST00000506632 SLC26A8Q96RN1 970 aa13.73□□□□□ -0.21
PDLIM5-209ENST00000506632 KCNA6P17658 529 aa13.72□□□□□ -0.21
PDLIM5-209ENST00000506632 TRPM2O94759 1503 aa13.71□□□□□ -0.21
PDLIM5-209ENST00000506632 HDGFP51858 240 aaKnown RBP13.71□□□□□ -0.21
PDLIM5-209ENST00000506632 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.71□□□□□ -0.21
PDLIM5-209ENST00000506632 NKTRP30414 1462 aaKnown RBP13.71□□□□□ -0.21
PDLIM5-209ENST00000506632 CHGAP10645 457 aaKnown RBP13.7□□□□□ -0.22
PDLIM5-209ENST00000506632 CLTCL1P53675 1640 aa13.7□□□□□ -0.22
PDLIM5-209ENST00000506632 ADAMTS13Q76LX8 1427 aa13.7□□□□□ -0.22
PDLIM5-209ENST00000506632 PPP1R15AO75807 674 aaPredicted RBP13.69□□□□□ -0.22
PDLIM5-209ENST00000506632 CHD2O14647 1828 aaKnown RBP13.69□□□□□ -0.22
PDLIM5-209ENST00000506632 DIP2AQ14689 1571 aa13.68□□□□□ -0.22
PDLIM5-209ENST00000506632 PIP4K2BP78356 416 aa13.68□□□□□ -0.22
PDLIM5-209ENST00000506632 TBX22Q9Y458 520 aa13.68□□□□□ -0.22
PDLIM5-209ENST00000506632 TMEM94Q12767 1356 aa13.68□□□□□ -0.22
PDLIM5-209ENST00000506632 HSPA1LP34931 641 aa13.66□□□□□ -0.22
PDLIM5-209ENST00000506632 SCAF1Q9H7N4 1312 aaKnown RBP13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 NRXN3Q9Y4C0 1643 aa13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 NUTM2DQ5VT03 806 aaPredicted RBP13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 TRIM52Q96A61 297 aa13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 BCANQ96GW7 911 aa13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 PIK3R4Q99570 1358 aa13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 SETBP1Q9Y6X0 1596 aa13.65□□□□□ -0.22
PDLIM5-209ENST00000506632 NEXMIFQ5QGS0 1516 aa13.64□□□□□ -0.23
PDLIM5-209ENST00000506632 PROSER2Q86WR7 435 aaPredicted RBP13.64□□□□□ -0.23
PDLIM5-209ENST00000506632 KIF1BO60333 1816 aa13.63□□□□□ -0.23
PDLIM5-209ENST00000506632 SLC4A1APQ9BWU0 796 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-209ENST00000506632 DISP3Q9P2K9 1392 aa13.62□□□□□ -0.23
PDLIM5-209ENST00000506632 NCOA3Q9Y6Q9 1424 aa13.62□□□□□ -0.23
PDLIM5-209ENST00000506632 FAM135BQ49AJ0 1406 aa13.61□□□□□ -0.23
PDLIM5-209ENST00000506632 PTPRUQ92729 1446 aa13.61□□□□□ -0.23
PDLIM5-209ENST00000506632 ZNF326Q5BKZ1 582 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-209ENST00000506632 XRN1Q8IZH2 1706 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-209ENST00000506632 RBM33Q96EV2 1170 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-209ENST00000506632 MSH6P52701 1360 aa13.58□□□□□ -0.23
PDLIM5-209ENST00000506632 SETD5Q9C0A6 1442 aa13.58□□□□□ -0.24
PDLIM5-209ENST00000506632 ACIN1Q9UKV3 1341 aaKnown RBP13.58□□□□□ -0.24
PDLIM5-209ENST00000506632 FOXD1Q16676 465 aa13.57□□□□□ -0.24
PDLIM5-209ENST00000506632 MPHOSPH9Q99550 1183 aa13.57□□□□□ -0.24
PDLIM5-209ENST00000506632 RPGRIP1LQ68CZ1 1315 aa13.57□□□□□ -0.24
PDLIM5-209ENST00000506632 MED1Q15648 1581 aaPredicted RBP13.57□□□□□ -0.24
PDLIM5-209ENST00000506632 METP08581 1390 aa13.57□□□□□ -0.24
PDLIM5-209ENST00000506632 ROBO1Q9Y6N7 1651 aa13.56□□□□□ -0.24
PDLIM5-209ENST00000506632 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
PDLIM5-209ENST00000506632 SETD1AO15047 1707 aaKnown RBP13.56□□□□□ -0.24
PDLIM5-209ENST00000506632 PPLO60437 1756 aa13.55□□□□□ -0.24
PDLIM5-209ENST00000506632 ILDR2Q71H61 639 aa13.55□□□□□ -0.24
PDLIM5-209ENST00000506632 SPATA31E1Q6ZUB1 1445 aa13.55□□□□□ -0.24
PDLIM5-209ENST00000506632 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.54□□□□□ -0.24
PDLIM5-209ENST00000506632 VGFO15240 615 aaPredicted RBP13.54□□□□□ -0.24
PDLIM5-209ENST00000506632 CCDC144AA2RUR9 1427 aa13.54□□□□□ -0.24
PDLIM5-209ENST00000506632 C19orf44Q9H6X5 657 aa13.53□□□□□ -0.24
PDLIM5-209ENST00000506632 SLAIN2Q9P270 581 aa13.53□□□□□ -0.24
PDLIM5-209ENST00000506632 RAB3GAP2Q9H2M9 1393 aa13.53□□□□□ -0.24
PDLIM5-209ENST00000506632 DCCP43146 1447 aa13.52□□□□□ -0.25
PDLIM5-209ENST00000506632 PRAG1Q86YV5 1406 aa13.52□□□□□ -0.25
PDLIM5-209ENST00000506632 IFT172Q9UG01 1749 aa13.51□□□□□ -0.25
PDLIM5-209ENST00000506632 CADPS2Q86UW7 1296 aa13.5□□□□□ -0.25
PDLIM5-209ENST00000506632 PTCH1Q13635 1447 aa13.49□□□□□ -0.25
PDLIM5-209ENST00000506632 C14orf37Q86TY3 774 aa13.49□□□□□ -0.25
PDLIM5-209ENST00000506632 ADGRL3Q9HAR2 1447 aa13.48□□□□□ -0.25
PDLIM5-209ENST00000506632 ANKRD30BQ9BXX2 1392 aa13.48□□□□□ -0.25
PDLIM5-209ENST00000506632 ADGRF5Q8IZF2 1346 aa13.47□□□□□ -0.25
PDLIM5-209ENST00000506632 ATF3P18847 181 aa13.47□□□□□ -0.25
PDLIM5-209ENST00000506632 HRCP23327 699 aa13.47□□□□□ -0.25
PDLIM5-209ENST00000506632 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
PDLIM5-209ENST00000506632 NALCNQ8IZF0 1738 aa13.47□□□□□ -0.25
PDLIM5-209ENST00000506632 COL16A1Q07092 1604 aaPredicted RBP13.46□□□□□ -0.25
PDLIM5-209ENST00000506632 AHDC1Q5TGY3 1603 aaPredicted RBP13.46□□□□□ -0.25
PDLIM5-209ENST00000506632 MST1RQ04912 1400 aa13.46□□□□□ -0.26
PDLIM5-209ENST00000506632 ROBO2Q9HCK4 1378 aa13.45□□□□□ -0.26
PDLIM5-209ENST00000506632 RGL3Q3MIN7 710 aa13.45□□□□□ -0.26
PDLIM5-209ENST00000506632 PIK3C2GO75747 1445 aa13.45□□□□□ -0.26
PDLIM5-209ENST00000506632 ASXL1Q8IXJ9 1541 aa13.44□□□□□ -0.26
PDLIM5-209ENST00000506632 NRXN1Q9ULB1 1477 aa13.43□□□□□ -0.26
PDLIM5-209ENST00000506632 TECPR2O15040 1411 aa13.43□□□□□ -0.26
PDLIM5-209ENST00000506632 BRINP3Q76B58 766 aa13.43□□□□□ -0.26
PDLIM5-209ENST00000506632 MYOM2P54296 1465 aa13.42□□□□□ -0.26
PDLIM5-209ENST00000506632 SOCS7O14512 581 aa13.42□□□□□ -0.26
PDLIM5-209ENST00000506632 JCADQ9P266 1359 aa13.42□□□□□ -0.26
PDLIM5-209ENST00000506632 NHSL1Q5SYE7 1610 aa13.41□□□□□ -0.26
PDLIM5-209ENST00000506632 KNDC1Q76NI1 1749 aa13.4□□□□□ -0.26
PDLIM5-209ENST00000506632 RGS17Q9UGC6 210 aaPredicted RBP13.4□□□□□ -0.26
PDLIM5-209ENST00000506632 LRPPRCP42704 1394 aaKnown RBP13.4□□□□□ -0.26
PDLIM5-209ENST00000506632 ABCC11Q96J66 1382 aa13.4□□□□□ -0.26
PDLIM5-209ENST00000506632 C1orf167Q5SNV9 1468 aa13.4□□□□□ -0.26
PDLIM5-209ENST00000506632 SHPRHQ149N8 1683 aa13.39□□□□□ -0.27
PDLIM5-209ENST00000506632 LAMC1P11047 1609 aa13.39□□□□□ -0.27
PDLIM5-209ENST00000506632 CDC42BPGQ6DT37 1551 aa13.38□□□□□ -0.27
PDLIM5-209ENST00000506632 C14orf93Q9H972 538 aaKnown RBP13.38□□□□□ -0.27
PDLIM5-209ENST00000506632 YTHDC2Q9H6S0 1430 aaKnown RBP13.37□□□□□ -0.27
PDLIM5-209ENST00000506632 TMEM132EQ6IEE7 984 aa13.36□□□□□ -0.27
PDLIM5-209ENST00000506632 SPATA31A6Q5VVP1 1343 aa13.36□□□□□ -0.27
PDLIM5-209ENST00000506632 LRP6O75581 1613 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms