RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 AKAP12Q02952 1782 aa4.57□□□□□ -1.68
NEDD4-204ENST00000503468 BRD4O60885 1362 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-204ENST00000503468 COL5A2P05997 1499 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-204ENST00000503468 C9orf84Q5VXU9 1444 aa4.56□□□□□ -1.68
NEDD4-204ENST00000503468 CHD2O14647 1828 aaKnown RBP4.56□□□□□ -1.68
NEDD4-204ENST00000503468 PRG4Q92954 1404 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-204ENST00000503468 PIK3C2GO75747 1445 aa4.55□□□□□ -1.68
NEDD4-204ENST00000503468 C1orf167Q5SNV9 1468 aa4.55□□□□□ -1.68
NEDD4-204ENST00000503468 PHF23Q9BUL5 403 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-204ENST00000503468 PTCH1Q13635 1447 aa4.55□□□□□ -1.68
NEDD4-204ENST00000503468 KDRP35968 1356 aa4.54□□□□□ -1.68
NEDD4-204ENST00000503468 KTN1Q86UP2 1357 aaKnown RBP4.54□□□□□ -1.68
NEDD4-204ENST00000503468 TRPM3Q9HCF6 1732 aaPredicted RBP4.54□□□□□ -1.68
NEDD4-204ENST00000503468 XIRP1Q702N8 1843 aaKnown RBP4.54□□□□□ -1.68
NEDD4-204ENST00000503468 QRICH2Q9H0J4 1663 aa4.54□□□□□ -1.68
NEDD4-204ENST00000503468 PIK3C2AO00443 1686 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 MYO5BQ9ULV0 1848 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 RNF123Q5XPI4 1314 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 RGPD3A6NKT7 1758 aaPredicted RBP4.53□□□□□ -1.68
NEDD4-204ENST00000503468 RGPD4Q7Z3J3 1758 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 WASHC2AQ641Q2 1341 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 WASHC2CQ9Y4E1 1318 aa4.53□□□□□ -1.68
NEDD4-204ENST00000503468 COL18A1P39060 1754 aa4.52□□□□□ -1.69
NEDD4-204ENST00000503468 DCCP43146 1447 aa4.52□□□□□ -1.69
NEDD4-204ENST00000503468 PTPRMP28827 1452 aa4.51□□□□□ -1.69
NEDD4-204ENST00000503468 PLCH1Q4KWH8 1693 aa4.51□□□□□ -1.69
NEDD4-204ENST00000503468 COL3A1P02461 1466 aaPredicted RBP4.51□□□□□ -1.69
NEDD4-204ENST00000503468 ATP7BP35670 1465 aa4.51□□□□□ -1.69
NEDD4-204ENST00000503468 CD163L1Q9NR16 1453 aa4.51□□□□□ -1.69
NEDD4-204ENST00000503468 TSPOAP1O95153 1857 aa4.5□□□□□ -1.69
NEDD4-204ENST00000503468 ALS2Q96Q42 1657 aa4.5□□□□□ -1.69
NEDD4-204ENST00000503468 SIPA1L3O60292 1781 aaPredicted RBP4.5□□□□□ -1.69
NEDD4-204ENST00000503468 PPIP5K1Q6PFW1 1433 aa4.5□□□□□ -1.69
NEDD4-204ENST00000503468 BCL9O00512 1426 aa4.49□□□□□ -1.69
NEDD4-204ENST00000503468 PNPLA6Q8IY17 1366 aa4.49□□□□□ -1.69
NEDD4-204ENST00000503468 JCADQ9P266 1359 aa4.49□□□□□ -1.69
NEDD4-204ENST00000503468 TUBGCP6Q96RT7 1819 aa4.49□□□□□ -1.69
NEDD4-204ENST00000503468 LAMB1P07942 1786 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.47□□□□□ -1.69
NEDD4-204ENST00000503468 SLIT3O75094 1523 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 ZMYM3Q14202 1370 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 STRCQ7RTU9 1775 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 LRP6O75581 1613 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 ADAMTS13Q76LX8 1427 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 PEAK1Q9H792 1746 aa4.47□□□□□ -1.69
NEDD4-204ENST00000503468 ZC3H4Q9UPT8 1303 aaKnown RBP4.47□□□□□ -1.69
NEDD4-204ENST00000503468 FMN2Q9NZ56 1722 aa4.46□□□□□ -1.69
NEDD4-204ENST00000503468 NHSL1Q5SYE7 1610 aa4.46□□□□□ -1.7
NEDD4-204ENST00000503468 A2ML1A8K2U0 1454 aa4.46□□□□□ -1.7
NEDD4-204ENST00000503468 TRAPPC8Q9Y2L5 1435 aa4.46□□□□□ -1.7
NEDD4-204ENST00000503468 TULP4Q9NRJ4 1543 aa4.46□□□□□ -1.7
NEDD4-204ENST00000503468 PABPN1Q86U42 306 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEDD4-204ENST00000503468 FAM208AQ9UK61 1670 aaKnown RBP4.45□□□□□ -1.7
NEDD4-204ENST00000503468 ABCA3Q99758 1704 aa4.45□□□□□ -1.7
NEDD4-204ENST00000503468 JPH4Q96JJ6 628 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 KIF24Q5T7B8 1368 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 LTBP4Q8N2S1 1624 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 PAPPAQ13219 1627 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 QSER1Q2KHR3 1735 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 NSD3Q9BZ95 1437 aa4.44□□□□□ -1.7
NEDD4-204ENST00000503468 ANKRD50Q9ULJ7 1429 aa4.43□□□□□ -1.7
NEDD4-204ENST00000503468 USP31Q70CQ4 1352 aa4.43□□□□□ -1.7
NEDD4-204ENST00000503468 C4AP0C0L4 1744 aa4.43□□□□□ -1.7
NEDD4-204ENST00000503468 C4BP0C0L5 1744 aa4.43□□□□□ -1.7
NEDD4-204ENST00000503468 MRC1P22897 1456 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 KIF1BO60333 1816 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 NFAT5O94916 1531 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 WNK3Q9BYP7 1800 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 ABCC11Q96J66 1382 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 NPHP4O75161 1426 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-204ENST00000503468 LRP5O75197 1615 aa4.42□□□□□ -1.7
NEDD4-204ENST00000503468 PKD1L3Q7Z443 1732 aa4.41□□□□□ -1.7
NEDD4-204ENST00000503468 AHDC1Q5TGY3 1603 aaPredicted RBP4.41□□□□□ -1.7
NEDD4-204ENST00000503468 OVOS2A0A0G2JMS6 1433 aa4.41□□□□□ -1.7
NEDD4-204ENST00000503468 NINLQ9Y2I6 1382 aa4.41□□□□□ -1.7
NEDD4-204ENST00000503468 UBR2Q8IWV8 1755 aa4.4□□□□□ -1.7
NEDD4-204ENST00000503468 CACNA1FO60840 1977 aa4.4□□□□□ -1.71
NEDD4-204ENST00000503468 MTUS2Q5JR59 1369 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 ZNF521Q96K83 1311 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 ITSN1Q15811 1721 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 RPGRIP1LQ68CZ1 1315 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 STRCP1A6NGW2 1772 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 ANKARQ7Z5J8 1434 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 PARD3Q8TEW0 1356 aa4.39□□□□□ -1.71
NEDD4-204ENST00000503468 ZEB1P37275 1124 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-204ENST00000503468 BLMP54132 1417 aaPredicted RBP4.38□□□□□ -1.71
NEDD4-204ENST00000503468 SHANK3Q9BYB0 1731 aa4.37□□□□□ -1.71
NEDD4-204ENST00000503468 TRIM41Q8WV44 630 aa4.37□□□□□ -1.71
NEDD4-204ENST00000503468 PER1O15534 1290 aaPredicted RBP4.37□□□□□ -1.71
NEDD4-204ENST00000503468 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.37□□□□□ -1.71
NEDD4-204ENST00000503468 APLP2Q06481 763 aa4.36□□□□□ -1.71
NEDD4-204ENST00000503468 DAXXQ9UER7 740 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-204ENST00000503468 TESK2Q96S53 571 aa4.36□□□□□ -1.71
NEDD4-204ENST00000503468 POLR3AO14802 1390 aaPredicted RBP4.36□□□□□ -1.71
NEDD4-204ENST00000503468 ADGRL3Q9HAR2 1447 aa4.35□□□□□ -1.71
NEDD4-204ENST00000503468 IL17RAQ96F46 866 aa4.35□□□□□ -1.71
NEDD4-204ENST00000503468 RAB3GAP2Q9H2M9 1393 aa4.35□□□□□ -1.71
NEDD4-204ENST00000503468 DDX60Q8IY21 1712 aaKnown RBP4.34□□□□□ -1.71
NEDD4-204ENST00000503468 KANK4Q5T7N3 995 aaPredicted RBP4.34□□□□□ -1.71
NEDD4-204ENST00000503468 ZNF646O15015 1829 aaPredicted RBP4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms