RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 NISCHQ9Y2I1 1504 aa7.99□□□□□ -1.13
NEDD4-204ENST00000503468 MYO15BQ96JP2 1530 aa7.67□□□□□ -1.18
NEDD4-204ENST00000503468 DCAF1Q9Y4B6 1507 aa7.54□□□□□ -1.2
NEDD4-204ENST00000503468 CCDC180Q9P1Z9 1646 aa7.53□□□□□ -1.2
NEDD4-204ENST00000503468 SHROOM4Q9ULL8 1493 aa7.14□□□□□ -1.27
NEDD4-204ENST00000503468 ZCCHC6Q5VYS8 1495 aaKnown RBP6.93□□□□□ -1.3
NEDD4-204ENST00000503468 PEG3Q9GZU2 1588 aa6.83□□□□□ -1.32
NEDD4-204ENST00000503468 NACADO15069 1562 aa6.67□□□□□ -1.34
NEDD4-204ENST00000503468 EIF4G1Q04637 1599 aaKnown RBP6.58□□□□□ -1.36
NEDD4-204ENST00000503468 BICRAQ9NZM4 1560 aa6.5□□□□□ -1.37
NEDD4-204ENST00000503468 ABCC9O60706 1549 aa6.42□□□□□ -1.38
NEDD4-204ENST00000503468 UNC13AQ9UPW8 1703 aa6.36□□□□□ -1.39
NEDD4-204ENST00000503468 HMGXB3Q12766 1538 aa6.33□□□□□ -1.4
NEDD4-204ENST00000503468 BAZ1BQ9UIG0 1483 aaKnown RBP6.31□□□□□ -1.4
NEDD4-204ENST00000503468 SMARCA2P51531 1590 aa6.3□□□□□ -1.4
NEDD4-204ENST00000503468 RB1CC1Q8TDY2 1594 aa6.25□□□□□ -1.41
NEDD4-204ENST00000503468 WDR97A6NE52 1622 aa6.22□□□□□ -1.41
NEDD4-204ENST00000503468 NCAPD3P42695 1498 aa6.18□□□□□ -1.42
NEDD4-204ENST00000503468 BAZ1AQ9NRL2 1556 aaPredicted RBP6.15□□□□□ -1.42
NEDD4-204ENST00000503468 PRDM2Q13029 1718 aa6.14□□□□□ -1.43
NEDD4-204ENST00000503468 SMARCA4P51532 1647 aa6.06□□□□□ -1.44
NEDD4-204ENST00000503468 TOP2AP11388 1531 aaKnown RBP6.01□□□□□ -1.45
NEDD4-204ENST00000503468 BIVM-ERCC5R4GMW8 1640 aa5.99□□□□□ -1.45
NEDD4-204ENST00000503468 RSF1Q96T23 1441 aaPredicted RBP5.94□□□□□ -1.46
NEDD4-204ENST00000503468 CFTRP13569 1480 aa5.91□□□□□ -1.46
NEDD4-204ENST00000503468 ATAD2BQ9ULI0 1458 aa5.88□□□□□ -1.47
NEDD4-204ENST00000503468 MROH2BQ7Z745 1585 aa5.85□□□□□ -1.47
NEDD4-204ENST00000503468 SCRIBQ14160 1630 aa5.83□□□□□ -1.48
NEDD4-204ENST00000503468 LAMC3Q9Y6N6 1575 aa5.82□□□□□ -1.48
NEDD4-204ENST00000503468 MAP3K1Q13233 1512 aa5.82□□□□□ -1.48
NEDD4-204ENST00000503468 TOP2BQ02880 1626 aa5.79□□□□□ -1.48
NEDD4-204ENST00000503468 ERICH3Q5RHP9 1530 aa5.77□□□□□ -1.49
NEDD4-204ENST00000503468 ABCA5Q8WWZ7 1642 aa5.76□□□□□ -1.49
NEDD4-204ENST00000503468 TARBP1Q13395 1621 aaKnown RBP5.74□□□□□ -1.49
NEDD4-204ENST00000503468 SHROOM2Q13796 1616 aa5.73□□□□□ -1.49
NEDD4-204ENST00000503468 KDM5BQ9UGL1 1544 aa5.73□□□□□ -1.49
NEDD4-204ENST00000503468 EEA1Q15075 1411 aa5.72□□□□□ -1.49
NEDD4-204ENST00000503468 KIF21BO75037 1637 aa5.72□□□□□ -1.49
NEDD4-204ENST00000503468 WDR62O43379 1518 aa5.72□□□□□ -1.49
NEDD4-204ENST00000503468 CECR2Q9BXF3 1484 aa5.72□□□□□ -1.49
NEDD4-204ENST00000503468 PRXQ9BXM0 1461 aa5.71□□□□□ -1.5
NEDD4-204ENST00000503468 THOC2Q8NI27 1593 aaKnown RBP5.71□□□□□ -1.5
NEDD4-204ENST00000503468 WRNQ14191 1432 aaPredicted RBP eCLIP5.7□□□□□ -1.5
NEDD4-204ENST00000503468 ARHGEF11O15085 1522 aa5.69□□□□□ -1.5
NEDD4-204ENST00000503468 ABCC8Q09428 1581 aa5.68□□□□□ -1.5
NEDD4-204ENST00000503468 ABCA10Q8WWZ4 1543 aa5.68□□□□□ -1.5
NEDD4-204ENST00000503468 CC2D2AQ9P2K1 1620 aa5.66□□□□□ -1.5
NEDD4-204ENST00000503468 BCORL1Q5H9F3 1711 aa5.66□□□□□ -1.5
NEDD4-204ENST00000503468 CUX2O14529 1486 aa5.65□□□□□ -1.5
NEDD4-204ENST00000503468 SAMD9Q5K651 1589 aa5.65□□□□□ -1.51
NEDD4-204ENST00000503468 KIF21AQ7Z4S6 1674 aa5.64□□□□□ -1.51
NEDD4-204ENST00000503468 NEURL4Q96JN8 1562 aa5.62□□□□□ -1.51
NEDD4-204ENST00000503468 AQRO60306 1485 aaKnown RBP eCLIP5.62□□□□□ -1.51
NEDD4-204ENST00000503468 DNMBPQ6XZF7 1577 aa5.61□□□□□ -1.51
NEDD4-204ENST00000503468 ARAP3Q8WWN8 1544 aa5.61□□□□□ -1.51
NEDD4-204ENST00000503468 WIZO95785 1651 aa5.6□□□□□ -1.51
NEDD4-204ENST00000503468 CCDC88BA6NC98 1476 aa5.56□□□□□ -1.52
NEDD4-204ENST00000503468 CUL7Q14999 1698 aa5.55□□□□□ -1.52
NEDD4-204ENST00000503468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.55□□□□□ -1.52
NEDD4-204ENST00000503468 SYNJ1O43426 1573 aa5.53□□□□□ -1.52
NEDD4-204ENST00000503468 ZNF608Q9ULD9 1512 aaPredicted RBP5.52□□□□□ -1.53
NEDD4-204ENST00000503468 NUP160Q12769 1436 aa5.52□□□□□ -1.53
NEDD4-204ENST00000503468 CLASP1Q7Z460 1538 aa5.51□□□□□ -1.53
NEDD4-204ENST00000503468 ADCY10Q96PN6 1610 aa5.51□□□□□ -1.53
NEDD4-204ENST00000503468 AKNAQ7Z591 1439 aa5.51□□□□□ -1.53
NEDD4-204ENST00000503468 IFT140Q96RY7 1462 aa5.5□□□□□ -1.53
NEDD4-204ENST00000503468 UGGT2Q9NYU1 1516 aa5.5□□□□□ -1.53
NEDD4-204ENST00000503468 NESP48681 1621 aa5.5□□□□□ -1.53
NEDD4-204ENST00000503468 FAM135AQ9P2D6 1515 aa5.5□□□□□ -1.53
NEDD4-204ENST00000503468 CUX1P39880 1505 aa5.49□□□□□ -1.53
NEDD4-204ENST00000503468 CADPSQ9ULU8 1353 aa5.49□□□□□ -1.53
NEDD4-204ENST00000503468 WDR7Q9Y4E6 1490 aa5.49□□□□□ -1.53
NEDD4-204ENST00000503468 IQGAP2Q13576 1575 aa5.48□□□□□ -1.53
NEDD4-204ENST00000503468 EFCAB5A4FU69 1503 aa5.47□□□□□ -1.53
NEDD4-204ENST00000503468 PRAG1Q86YV5 1406 aa5.46□□□□□ -1.53
NEDD4-204ENST00000503468 REREQ9P2R6 1566 aa5.46□□□□□ -1.54
NEDD4-204ENST00000503468 RAPGEF2Q9Y4G8 1499 aa5.45□□□□□ -1.54
NEDD4-204ENST00000503468 ADAMTS12P58397 1594 aa5.44□□□□□ -1.54
NEDD4-204ENST00000503468 UHRF1BP1LA0JNW5 1464 aa5.43□□□□□ -1.54
NEDD4-204ENST00000503468 MAGI2Q86UL8 1455 aa5.42□□□□□ -1.54
NEDD4-204ENST00000503468 URB2Q14146 1524 aaKnown RBP5.42□□□□□ -1.54
NEDD4-204ENST00000503468 TOPBP1Q92547 1522 aa5.42□□□□□ -1.54
NEDD4-204ENST00000503468 RUSC2Q8N2Y8 1516 aa5.41□□□□□ -1.54
NEDD4-204ENST00000503468 CFAP43Q8NDM7 1665 aa5.4□□□□□ -1.54
NEDD4-204ENST00000503468 SNAPC4Q5SXM2 1469 aa5.4□□□□□ -1.55
NEDD4-204ENST00000503468 ZNF518AQ6AHZ1 1483 aa5.39□□□□□ -1.55
NEDD4-204ENST00000503468 VWDEQ8N2E2 1590 aa5.39□□□□□ -1.55
NEDD4-204ENST00000503468 ERCC6Q03468 1493 aa5.39□□□□□ -1.55
NEDD4-204ENST00000503468 MAGI1Q96QZ7 1491 aaPredicted RBP5.39□□□□□ -1.55
NEDD4-204ENST00000503468 POLA1P09884 1462 aaPredicted RBP5.37□□□□□ -1.55
NEDD4-204ENST00000503468 MAST1Q9Y2H9 1570 aa5.36□□□□□ -1.55
NEDD4-204ENST00000503468 KDM5AP29375 1690 aaKnown RBP5.36□□□□□ -1.55
NEDD4-204ENST00000503468 ATP10AO60312 1499 aa5.35□□□□□ -1.55
NEDD4-204ENST00000503468 GOLGA3Q08378 1498 aa5.35□□□□□ -1.55
NEDD4-204ENST00000503468 KDM5DQ9BY66 1539 aa5.35□□□□□ -1.55
NEDD4-204ENST00000503468 ABCA8O94911 1581 aa5.34□□□□□ -1.55
NEDD4-204ENST00000503468 CAMSAP2Q08AD1 1489 aa5.34□□□□□ -1.55
NEDD4-204ENST00000503468 TCOF1Q13428 1488 aaKnown RBP5.34□□□□□ -1.56
NEDD4-204ENST00000503468 GLI2P10070 1586 aa5.34□□□□□ -1.56
NEDD4-204ENST00000503468 EIF4G3O43432 1585 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms