RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TESPA1A2RU30 521 aaPredicted RBP8.32□□□□□ -1.08
USP54-217ENST00000498213 APLP1P51693 650 aa8.32□□□□□ -1.08
USP54-217ENST00000498213 MYO15BQ96JP2 1530 aa8.31□□□□□ -1.08
USP54-217ENST00000498213 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.31□□□□□ -1.08
USP54-217ENST00000498213 SWT1Q5T5J6 900 aaKnown RBP8.3□□□□□ -1.08
USP54-217ENST00000498213 TRAF7Q6Q0C0 670 aa8.3□□□□□ -1.08
USP54-217ENST00000498213 PADI6Q6TGC4 694 aa8.3□□□□□ -1.08
USP54-217ENST00000498213 NECTIN2Q92692 538 aa8.3□□□□□ -1.08
USP54-217ENST00000498213 SLF2Q8IX21 1173 aa8.29□□□□□ -1.08
USP54-217ENST00000498213 TTC13Q8NBP0 860 aa8.29□□□□□ -1.08
USP54-217ENST00000498213 NPDC1Q9NQX5 325 aaPredicted RBP8.29□□□□□ -1.08
USP54-217ENST00000498213 V9GY48 417 aaPredicted RBP8.29□□□□□ -1.08
USP54-217ENST00000498213 NESP48681 1621 aa8.29□□□□□ -1.08
USP54-217ENST00000498213 NRG2O14511 850 aaPredicted RBP8.28□□□□□ -1.08
USP54-217ENST00000498213 FCHSD2O94868 740 aa8.28□□□□□ -1.08
USP54-217ENST00000498213 NKX2-3Q8TAU0 364 aa8.28□□□□□ -1.08
USP54-217ENST00000498213 LCE2BO14633 110 aa8.27□□□□□ -1.09
USP54-217ENST00000498213 SLC4A3P48751 1232 aa8.27□□□□□ -1.09
USP54-217ENST00000498213 COPS2P61201 443 aa8.27□□□□□ -1.09
USP54-217ENST00000498213 PTGDRQ13258 359 aa8.27□□□□□ -1.09
USP54-217ENST00000498213 RBM26Q5T8P6 1007 aaKnown RBP8.27□□□□□ -1.09
USP54-217ENST00000498213 GGCXP38435 758 aa8.26□□□□□ -1.09
USP54-217ENST00000498213 EYA1Q99502 592 aa8.24□□□□□ -1.09
USP54-217ENST00000498213 GPIHBP1Q8IV16 184 aa8.23□□□□□ -1.09
USP54-217ENST00000498213 ZPR1O75312 459 aa8.22□□□□□ -1.09
USP54-217ENST00000498213 HIC1Q14526 733 aa8.22□□□□□ -1.09
USP54-217ENST00000498213 PRR14Q9BWN1 585 aa8.22□□□□□ -1.09
USP54-217ENST00000498213 CYB5RLQ6IPT4 315 aa8.21□□□□□ -1.1
USP54-217ENST00000498213 RBM46Q8TBY0 533 aaKnown RBP8.21□□□□□ -1.1
USP54-217ENST00000498213 PDZRN3Q9UPQ7 1066 aa8.21□□□□□ -1.1
USP54-217ENST00000498213 PCDHB3Q9Y5E6 796 aa8.21□□□□□ -1.1
USP54-217ENST00000498213 THOC2Q8NI27 1593 aaKnown RBP8.21□□□□□ -1.1
USP54-217ENST00000498213 TMUB1Q9BVT8 246 aa8.2□□□□□ -1.1
USP54-217ENST00000498213 GNPATO15228 680 aa8.19□□□□□ -1.1
USP54-217ENST00000498213 SMARCA2P51531 1590 aa8.18□□□□□ -1.1
USP54-217ENST00000498213 DNAJB2P25686 324 aa8.18□□□□□ -1.1
USP54-217ENST00000498213 SLC24A1O60721 1099 aa8.17□□□□□ -1.1
USP54-217ENST00000498213 BLOC1S3Q6QNY0 202 aa8.17□□□□□ -1.1
USP54-217ENST00000498213 ADGRG1Q9Y653 693 aa8.17□□□□□ -1.1
USP54-217ENST00000498213 RIMBP3CA6NJZ7 1639 aa8.16□□□□□ -1.1
USP54-217ENST00000498213 RIMBP3BA6NNM3 1639 aa8.16□□□□□ -1.1
USP54-217ENST00000498213 OATP04181 439 aa8.16□□□□□ -1.1
USP54-217ENST00000498213 FAM161AQ3B820 660 aa8.16□□□□□ -1.1
USP54-217ENST00000498213 RIMBP3Q9UFD9 1639 aa8.16□□□□□ -1.1
USP54-217ENST00000498213 BAZ1AQ9NRL2 1556 aaPredicted RBP8.15□□□□□ -1.1
USP54-217ENST00000498213 RNF223E7ERA6 249 aa8.15□□□□□ -1.1
USP54-217ENST00000498213 TMEM134Q9H6X4 195 aa8.15□□□□□ -1.1
USP54-217ENST00000498213 TLL1O43897 1013 aa8.14□□□□□ -1.11
USP54-217ENST00000498213 SLC19A1P41440 591 aa8.14□□□□□ -1.11
USP54-217ENST00000498213 KMT5BQ4FZB7 885 aa8.14□□□□□ -1.11
USP54-217ENST00000498213 ZNF787Q6DD87 383 aa8.14□□□□□ -1.11
USP54-217ENST00000498213 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.12□□□□□ -1.11
USP54-217ENST00000498213 RCCD1A6NED2 376 aa8.12□□□□□ -1.11
USP54-217ENST00000498213 GPR37O15354 613 aa8.12□□□□□ -1.11
USP54-217ENST00000498213 ACTN4O43707 911 aaKnown RBP8.12□□□□□ -1.11
USP54-217ENST00000498213 LMOD2Q6P5Q4 547 aa8.12□□□□□ -1.11
USP54-217ENST00000498213 CFHP08603 1231 aa8.11□□□□□ -1.11
USP54-217ENST00000498213 FECHP22830 423 aa8.11□□□□□ -1.11
USP54-217ENST00000498213 NCAPD3P42695 1498 aa8.11□□□□□ -1.11
USP54-217ENST00000498213 PPEF1O14829 653 aaPredicted RBP8.1□□□□□ -1.11
USP54-217ENST00000498213 S1PR4O95977 384 aa8.1□□□□□ -1.11
USP54-217ENST00000498213 SPRYD7Q5W111 196 aa8.1□□□□□ -1.11
USP54-217ENST00000498213 TRIM67Q6ZTA4 783 aa8.1□□□□□ -1.11
USP54-217ENST00000498213 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP54-217ENST00000498213 METTL3Q86U44 580 aaKnown RBP8.1□□□□□ -1.11
USP54-217ENST00000498213 ANKLE1Q8NAG6 615 aa8.1□□□□□ -1.11
USP54-217ENST00000498213 PXYLP1Q8TE99 480 aa8.1□□□□□ -1.11
USP54-217ENST00000498213 EMID1Q96A84 441 aaPredicted RBP8.1□□□□□ -1.11
USP54-217ENST00000498213 ZNF598Q86UK7 904 aaKnown RBP8.09□□□□□ -1.11
USP54-217ENST00000498213 ARHGEF11O15085 1522 aa8.08□□□□□ -1.12
USP54-217ENST00000498213 MAP2K5Q13163 448 aa8.08□□□□□ -1.12
USP54-217ENST00000498213 RSPH4AQ5TD94 716 aa8.08□□□□□ -1.12
USP54-217ENST00000498213 NR1I2O75469 434 aa8.07□□□□□ -1.12
USP54-217ENST00000498213 SLC10A3P09131 477 aa8.07□□□□□ -1.12
USP54-217ENST00000498213 PKDCCQ504Y2 493 aa8.07□□□□□ -1.12
USP54-217ENST00000498213 ADH1BP00325 375 aa8.06□□□□□ -1.12
USP54-217ENST00000498213 LIAT1Q6ZQX7 453 aa8.06□□□□□ -1.12
USP54-217ENST00000498213 DGAT1O75907 488 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 PRR20EP86478 221 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 PRR20CP86479 221 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 PRR20DP86480 221 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 PRR20BP86481 221 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 PRR20AP86496 221 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 ZNF697Q5TEC3 545 aa8.05□□□□□ -1.12
USP54-217ENST00000498213 KRI1Q8N9T8 703 aaKnown RBP8.05□□□□□ -1.12
USP54-217ENST00000498213 MYT1Q01538 1121 aa8.04□□□□□ -1.12
USP54-217ENST00000498213 RDH13Q8NBN7 331 aa8.04□□□□□ -1.12
USP54-217ENST00000498213 ZNF775Q96BV0 537 aaPredicted RBP8.04□□□□□ -1.12
USP54-217ENST00000498213 SLC6A16Q9GZN6 736 aa8.04□□□□□ -1.12
USP54-217ENST00000498213 MINK1Q8N4C8 1332 aaPredicted RBP8.03□□□□□ -1.12
USP54-217ENST00000498213 PDS5BQ9NTI5 1447 aa8.03□□□□□ -1.12
USP54-217ENST00000498213 KIF21AQ7Z4S6 1674 aa8.03□□□□□ -1.12
USP54-217ENST00000498213 FAM187AA6NFU0 413 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 TNFRSF10AO00220 468 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 IRF6O14896 467 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 SULF1Q8IWU6 871 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 SCUBE3Q8IX30 993 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 NLRP7Q8WX94 980 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 BCANQ96GW7 911 aa8.02□□□□□ -1.13
USP54-217ENST00000498213 DAXXQ9UER7 740 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms