RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SMARCA2P51531 1590 aa12.34□□□□□ -0.43
VIM-207ENST00000495528 SMARCA4P51532 1647 aa12.33□□□□□ -0.43
VIM-207ENST00000495528 TTLL12Q14166 644 aaPredicted RBP12.33□□□□□ -0.44
VIM-207ENST00000495528 STAC3Q96MF2 364 aa12.33□□□□□ -0.44
VIM-207ENST00000495528 NBPF3Q9H094 633 aa12.33□□□□□ -0.44
VIM-207ENST00000495528 HMGXB3Q12766 1538 aa12.32□□□□□ -0.44
VIM-207ENST00000495528 RCCD1A6NED2 376 aa12.32□□□□□ -0.44
VIM-207ENST00000495528 MDM2Q00987 491 aaPredicted RBP12.32□□□□□ -0.44
VIM-207ENST00000495528 BHMG1C9JSJ3 638 aaPredicted RBP12.31□□□□□ -0.44
VIM-207ENST00000495528 MRPL50Q8N5N7 158 aaKnown RBP12.31□□□□□ -0.44
VIM-207ENST00000495528 HRO43593 1189 aa12.3□□□□□ -0.44
VIM-207ENST00000495528 MMRN1Q13201 1228 aa12.3□□□□□ -0.44
VIM-207ENST00000495528 AMHR2Q16671 573 aa12.3□□□□□ -0.44
VIM-207ENST00000495528 GPBP1L1Q9HC44 474 aaPredicted RBP12.3□□□□□ -0.44
VIM-207ENST00000495528 BRPF1P55201 1214 aaPredicted RBP12.29□□□□□ -0.44
VIM-207ENST00000495528 BAZ1BQ9UIG0 1483 aaKnown RBP12.28□□□□□ -0.44
VIM-207ENST00000495528 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.28□□□□□ -0.44
VIM-207ENST00000495528 DNAJB2P25686 324 aa12.28□□□□□ -0.44
VIM-207ENST00000495528 FAM98CQ17RN3 349 aaKnown RBP12.28□□□□□ -0.44
VIM-207ENST00000495528 PARP9Q8IXQ6 854 aa12.27□□□□□ -0.45
VIM-207ENST00000495528 REPIN1Q9BWE0 567 aaKnown RBP12.27□□□□□ -0.45
VIM-207ENST00000495528 BAZ1AQ9NRL2 1556 aaPredicted RBP12.26□□□□□ -0.45
VIM-207ENST00000495528 GOLGA8CPA6NN73 597 aa12.25□□□□□ -0.45
VIM-207ENST00000495528 CLCN1P35523 988 aa12.25□□□□□ -0.45
VIM-207ENST00000495528 LAPTM4BQ86VI4 370 aa12.25□□□□□ -0.45
VIM-207ENST00000495528 GPCPD1Q9NPB8 672 aa12.25□□□□□ -0.45
VIM-207ENST00000495528 ZFRQ96KR1 1074 aaKnown RBP12.24□□□□□ -0.45
VIM-207ENST00000495528 TMEM134Q9H6X4 195 aa12.24□□□□□ -0.45
VIM-207ENST00000495528 SWT1Q5T5J6 900 aaKnown RBP12.23□□□□□ -0.45
VIM-207ENST00000495528 GIGYF2Q6Y7W6 1299 aaKnown RBP12.23□□□□□ -0.45
VIM-207ENST00000495528 SAMD7Q7Z3H4 446 aa12.23□□□□□ -0.45
VIM-207ENST00000495528 KDM4CQ9H3R0 1056 aa12.23□□□□□ -0.45
VIM-207ENST00000495528 HDGFP51858 240 aaKnown RBP12.22□□□□□ -0.45
VIM-207ENST00000495528 PEG3Q9GZU2 1588 aa12.22□□□□□ -0.45
VIM-207ENST00000495528 RNF40O75150 1001 aa12.21□□□□□ -0.45
VIM-207ENST00000495528 DAXXQ9UER7 740 aaPredicted RBP12.21□□□□□ -0.45
VIM-207ENST00000495528 MROH2BQ7Z745 1585 aa12.21□□□□□ -0.46
VIM-207ENST00000495528 TMUB1Q9BVT8 246 aa12.2□□□□□ -0.46
VIM-207ENST00000495528 DDX11L8A8MPP1 907 aa12.19□□□□□ -0.46
VIM-207ENST00000495528 SSTR3P32745 418 aaPredicted RBP12.18□□□□□ -0.46
VIM-207ENST00000495528 THOC2Q8NI27 1593 aaKnown RBP12.18□□□□□ -0.46
VIM-207ENST00000495528 LAMC3Q9Y6N6 1575 aa12.18□□□□□ -0.46
VIM-207ENST00000495528 MS4A1P11836 297 aa12.17□□□□□ -0.46
VIM-207ENST00000495528 ANKK1Q8NFD2 765 aa12.17□□□□□ -0.46
VIM-207ENST00000495528 WNT2BQ93097 391 aa12.17□□□□□ -0.46
VIM-207ENST00000495528 FAM217BQ9NTX9 383 aaPredicted RBP12.17□□□□□ -0.46
VIM-207ENST00000495528 LRCH3Q96II8 777 aa12.16□□□□□ -0.46
VIM-207ENST00000495528 PDS5BQ9NTI5 1447 aa12.16□□□□□ -0.46
VIM-207ENST00000495528 BCAMP50895 628 aa12.15□□□□□ -0.46
VIM-207ENST00000495528 RDH13Q8NBN7 331 aa12.15□□□□□ -0.46
VIM-207ENST00000495528 KCTD12Q96CX2 325 aaKnown RBP12.15□□□□□ -0.46
VIM-207ENST00000495528 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.15□□□□□ -0.46
VIM-207ENST00000495528 SLC4A3P48751 1232 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 SULF1Q8IWU6 871 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 SLF2Q8IX21 1173 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 IL27Q8NEV9 243 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 FAM117AQ9C073 453 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 CADPSQ9ULU8 1353 aa12.13□□□□□ -0.47
VIM-207ENST00000495528 BEGAINQ9BUH8 593 aa12.11□□□□□ -0.47
VIM-207ENST00000495528 SOWAHBA6NEL2 793 aa12.1□□□□□ -0.47
VIM-207ENST00000495528 SLC10A3P09131 477 aa12.1□□□□□ -0.47
VIM-207ENST00000495528 MYT1LQ9UL68 1186 aa12.1□□□□□ -0.47
VIM-207ENST00000495528 KIF21AQ7Z4S6 1674 aa12.1□□□□□ -0.47
VIM-207ENST00000495528 CD46P15529 392 aa12.09□□□□□ -0.47
VIM-207ENST00000495528 RSPH4AQ5TD94 716 aa12.09□□□□□ -0.47
VIM-207ENST00000495528 HPS5Q9UPZ3 1129 aa12.09□□□□□ -0.47
VIM-207ENST00000495528 PPP4CP60510 307 aa12.07□□□□□ -0.48
VIM-207ENST00000495528 THSD4Q6ZMP0 1018 aa12.06□□□□□ -0.48
VIM-207ENST00000495528 CFHP08603 1231 aa12.05□□□□□ -0.48
VIM-207ENST00000495528 PTPN5P54829 565 aa12.05□□□□□ -0.48
VIM-207ENST00000495528 DDRGK1Q96HY6 314 aa12.05□□□□□ -0.48
VIM-207ENST00000495528 MRC2Q9UBG0 1479 aa12.05□□□□□ -0.48
VIM-207ENST00000495528 PLEKHG3A1L390 1219 aa12.04□□□□□ -0.48
VIM-207ENST00000495528 TSR3Q9UJK0 312 aaKnown RBP12.04□□□□□ -0.48
VIM-207ENST00000495528 WBP1LQ9NX94 342 aa12.03□□□□□ -0.48
VIM-207ENST00000495528 GCGRP47871 477 aa12.02□□□□□ -0.49
VIM-207ENST00000495528 NUTM1Q86Y26 1132 aa12.02□□□□□ -0.49
VIM-207ENST00000495528 WIZO95785 1651 aa12.02□□□□□ -0.49
VIM-207ENST00000495528 WDR62O43379 1518 aa12.01□□□□□ -0.49
VIM-207ENST00000495528 RNF166Q96A37 237 aaPredicted RBP12□□□□□ -0.49
VIM-207ENST00000495528 KMT5BQ4FZB7 885 aa11.99□□□□□ -0.49
VIM-207ENST00000495528 SPIRE2Q8WWL2 714 aa11.99□□□□□ -0.49
VIM-207ENST00000495528 NECTIN2Q92692 538 aa11.99□□□□□ -0.49
VIM-207ENST00000495528 TBC1D2Q9BYX2 928 aa11.99□□□□□ -0.49
VIM-207ENST00000495528 KDM4AO75164 1064 aa11.98□□□□□ -0.49
VIM-207ENST00000495528 APLP1P51693 650 aa11.97□□□□□ -0.49
VIM-207ENST00000495528 FANCD2Q9BXW9 1451 aa11.96□□□□□ -0.49
VIM-207ENST00000495528 CEP164Q9UPV0 1460 aa11.96□□□□□ -0.49
VIM-207ENST00000495528 FUT2Q10981 343 aa11.96□□□□□ -0.49
VIM-207ENST00000495528 ATP1B4Q9UN42 357 aaPredicted RBP11.96□□□□□ -0.49
VIM-207ENST00000495528 TMEM132AQ24JP5 1023 aa11.95□□□□□ -0.5
VIM-207ENST00000495528 POLR3EQ9NVU0 708 aa11.95□□□□□ -0.5
VIM-207ENST00000495528 NDUFV2P19404 249 aa11.94□□□□□ -0.5
VIM-207ENST00000495528 PUS10Q3MIT2 529 aaKnown RBP11.94□□□□□ -0.5
VIM-207ENST00000495528 CFTRP13569 1480 aa11.94□□□□□ -0.5
VIM-207ENST00000495528 ACTN4O43707 911 aaKnown RBP11.93□□□□□ -0.5
VIM-207ENST00000495528 MYSM1Q5VVJ2 828 aa11.93□□□□□ -0.5
VIM-207ENST00000495528 HLA-CQ95604 372 aa11.93□□□□□ -0.5
VIM-207ENST00000495528 RSPH6AQ9H0K4 717 aa11.93□□□□□ -0.5
VIM-207ENST00000495528 RSF1Q96T23 1441 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms