RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMUB1Q9BVT8 246 aa11.99□□□□□ -0.49
VPS50-219ENST00000495039 ADGRG1Q9Y653 693 aa11.99□□□□□ -0.49
VPS50-219ENST00000495039 TMEM134Q9H6X4 195 aa11.98□□□□□ -0.49
VPS50-219ENST00000495039 TRAF7Q6Q0C0 670 aa11.97□□□□□ -0.49
VPS50-219ENST00000495039 RCCD1A6NED2 376 aa11.95□□□□□ -0.5
VPS50-219ENST00000495039 FCHSD2O94868 740 aa11.95□□□□□ -0.5
VPS50-219ENST00000495039 BLOC1S3Q6QNY0 202 aa11.95□□□□□ -0.5
VPS50-219ENST00000495039 KMT5BQ4FZB7 885 aa11.94□□□□□ -0.5
VPS50-219ENST00000495039 LCE2BO14633 110 aa11.93□□□□□ -0.5
VPS50-219ENST00000495039 PDZRN3Q9UPQ7 1066 aa11.92□□□□□ -0.5
VPS50-219ENST00000495039 SEMA3EO15041 775 aa11.91□□□□□ -0.5
VPS50-219ENST00000495039 ACTN4O43707 911 aaKnown RBP11.91□□□□□ -0.5
VPS50-219ENST00000495039 FAM161AQ3B820 660 aa11.91□□□□□ -0.5
VPS50-219ENST00000495039 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.9□□□□□ -0.5
VPS50-219ENST00000495039 CFHP08603 1231 aa11.9□□□□□ -0.5
VPS50-219ENST00000495039 RNF223E7ERA6 249 aa11.88□□□□□ -0.51
VPS50-219ENST00000495039 TLL1O43897 1013 aa11.88□□□□□ -0.51
VPS50-219ENST00000495039 OATP04181 439 aa11.87□□□□□ -0.51
VPS50-219ENST00000495039 SLC19A1P41440 591 aa11.85□□□□□ -0.51
VPS50-219ENST00000495039 SLC10A3P09131 477 aa11.84□□□□□ -0.51
VPS50-219ENST00000495039 HIC1Q14526 733 aa11.84□□□□□ -0.51
VPS50-219ENST00000495039 PXYLP1Q8TE99 480 aa11.84□□□□□ -0.51
VPS50-219ENST00000495039 NR1I2O75469 434 aa11.83□□□□□ -0.52
VPS50-219ENST00000495039 ANKLE1Q8NAG6 615 aa11.83□□□□□ -0.52
VPS50-219ENST00000495039 RSPH4AQ5TD94 716 aa11.82□□□□□ -0.52
VPS50-219ENST00000495039 SMYD5Q6GMV2 418 aa11.82□□□□□ -0.52
VPS50-219ENST00000495039 S1PR4O95977 384 aa11.81□□□□□ -0.52
VPS50-219ENST00000495039 ADH1BP00325 375 aa11.81□□□□□ -0.52
VPS50-219ENST00000495039 METTL3Q86U44 580 aaKnown RBP11.8□□□□□ -0.52
VPS50-219ENST00000495039 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
VPS50-219ENST00000495039 RBM26Q5T8P6 1007 aaKnown RBP11.78□□□□□ -0.52
VPS50-219ENST00000495039 SPRYD7Q5W111 196 aa11.78□□□□□ -0.52
VPS50-219ENST00000495039 EMID1Q96A84 441 aaPredicted RBP11.78□□□□□ -0.52
VPS50-219ENST00000495039 PPEF1O14829 653 aaPredicted RBP11.77□□□□□ -0.53
VPS50-219ENST00000495039 TRIM67Q6ZTA4 783 aa11.77□□□□□ -0.53
VPS50-219ENST00000495039 ZNF598Q86UK7 904 aaKnown RBP11.77□□□□□ -0.53
VPS50-219ENST00000495039 GNPATO15228 680 aa11.76□□□□□ -0.53
VPS50-219ENST00000495039 SLC6A16Q9GZN6 736 aa11.76□□□□□ -0.53
VPS50-219ENST00000495039 PLCB2Q00722 1185 aa11.74□□□□□ -0.53
VPS50-219ENST00000495039 SCUBE3Q8IX30 993 aa11.74□□□□□ -0.53
VPS50-219ENST00000495039 PRR20EP86478 221 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 PRR20CP86479 221 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 PRR20DP86480 221 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 PRR20BP86481 221 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 PRR20AP86496 221 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 ZNF697Q5TEC3 545 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 ZNF787Q6DD87 383 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 LIAT1Q6ZQX7 453 aa11.73□□□□□ -0.53
VPS50-219ENST00000495039 PUS10Q3MIT2 529 aaKnown RBP11.72□□□□□ -0.53
VPS50-219ENST00000495039 PKDCCQ504Y2 493 aa11.72□□□□□ -0.53
VPS50-219ENST00000495039 RDH13Q8NBN7 331 aa11.71□□□□□ -0.53
VPS50-219ENST00000495039 SPSB2Q99619 263 aa11.71□□□□□ -0.53
VPS50-219ENST00000495039 DAXXQ9UER7 740 aaPredicted RBP11.71□□□□□ -0.53
VPS50-219ENST00000495039 GPR37O15354 613 aa11.7□□□□□ -0.54
VPS50-219ENST00000495039 FECHP22830 423 aa11.7□□□□□ -0.54
VPS50-219ENST00000495039 DGAT1O75907 488 aa11.69□□□□□ -0.54
VPS50-219ENST00000495039 PLA2G2CQ5R387 149 aa11.67□□□□□ -0.54
VPS50-219ENST00000495039 DDX11L8A8MPP1 907 aa11.66□□□□□ -0.54
VPS50-219ENST00000495039 GDF9O60383 454 aa11.66□□□□□ -0.54
VPS50-219ENST00000495039 SULF1Q8IWU6 871 aa11.66□□□□□ -0.54
VPS50-219ENST00000495039 TNFRSF10AO00220 468 aa11.65□□□□□ -0.54
VPS50-219ENST00000495039 MYT1Q01538 1121 aa11.65□□□□□ -0.54
VPS50-219ENST00000495039 MORN1Q5T089 497 aa11.65□□□□□ -0.54
VPS50-219ENST00000495039 FUT2Q10981 343 aa11.64□□□□□ -0.55
VPS50-219ENST00000495039 FAM187AA6NFU0 413 aa11.63□□□□□ -0.55
VPS50-219ENST00000495039 ATP6V1AP38606 617 aa11.63□□□□□ -0.55
VPS50-219ENST00000495039 GPIHBP1Q8IV16 184 aa11.62□□□□□ -0.55
VPS50-219ENST00000495039 NLRP7Q8WX94 980 aa11.62□□□□□ -0.55
VPS50-219ENST00000495039 FMNL1O95466 1100 aaPredicted RBP11.61□□□□□ -0.55
VPS50-219ENST00000495039 GCGRP47871 477 aa11.61□□□□□ -0.55
VPS50-219ENST00000495039 LMOD2Q6P5Q4 547 aa11.61□□□□□ -0.55
VPS50-219ENST00000495039 THAP11Q96EK4 314 aa11.61□□□□□ -0.55
VPS50-219ENST00000495039 RPIAP49247 311 aa11.6□□□□□ -0.55
VPS50-219ENST00000495039 PHOX2BQ99453 314 aa11.6□□□□□ -0.55
VPS50-219ENST00000495039 SLC27A5Q9Y2P5 690 aa11.59□□□□□ -0.55
VPS50-219ENST00000495039 FCF1Q9Y324 198 aaKnown RBP11.58□□□□□ -0.56
VPS50-219ENST00000495039 SALL2Q9Y467 1007 aaPredicted RBP11.58□□□□□ -0.56
VPS50-219ENST00000495039 ZNF775Q96BV0 537 aaPredicted RBP11.57□□□□□ -0.56
VPS50-219ENST00000495039 FOXC1Q12948 553 aa11.56□□□□□ -0.56
VPS50-219ENST00000495039 GRIPAP1Q4V328 841 aa11.56□□□□□ -0.56
VPS50-219ENST00000495039 PKD2L1Q9P0L9 805 aa11.56□□□□□ -0.56
VPS50-219ENST00000495039 CD2BP2O95400 341 aaKnown RBP11.55□□□□□ -0.56
VPS50-219ENST00000495039 HAP1P54257 671 aaPredicted RBP11.55□□□□□ -0.56
VPS50-219ENST00000495039 FAM160A2Q8N612 972 aaPredicted RBP11.55□□□□□ -0.56
VPS50-219ENST00000495039 BRICD5Q6PL45 260 aa11.54□□□□□ -0.56
VPS50-219ENST00000495039 MSS51Q4VC12 460 aa11.53□□□□□ -0.56
VPS50-219ENST00000495039 PRDM9Q9NQV7 894 aa11.52□□□□□ -0.57
VPS50-219ENST00000495039 RNF19BQ6ZMZ0 732 aa11.5□□□□□ -0.57
VPS50-219ENST00000495039 AAASQ9NRG9 546 aa11.5□□□□□ -0.57
VPS50-219ENST00000495039 POTECB2RU33 542 aa11.49□□□□□ -0.57
VPS50-219ENST00000495039 TULP1O00294 542 aaPredicted RBP11.49□□□□□ -0.57
VPS50-219ENST00000495039 ST8SIA5O15466 376 aa11.49□□□□□ -0.57
VPS50-219ENST00000495039 ZBTB24O43167 697 aaPredicted RBP11.49□□□□□ -0.57
VPS50-219ENST00000495039 MAP2K5Q13163 448 aa11.49□□□□□ -0.57
VPS50-219ENST00000495039 Q3C1V9 767 aa11.49□□□□□ -0.57
VPS50-219ENST00000495039 CYP4X1Q8N118 509 aa11.49□□□□□ -0.57
VPS50-219ENST00000495039 TOR4AQ9NXH8 423 aa11.48□□□□□ -0.57
VPS50-219ENST00000495039 CD46P15529 392 aa11.47□□□□□ -0.57
VPS50-219ENST00000495039 CRIPAKQ8N1N5 446 aa11.46□□□□□ -0.57
VPS50-219ENST00000495039 KDM2AQ9Y2K7 1162 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms