RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 PPP1R15AO75807 674 aaPredicted RBP22.14■■□□□ 1.13
VARS-228ENST00000495010 FAM50AQ14320 339 aaKnown RBP22.14■■□□□ 1.13
VARS-228ENST00000495010 NKTRP30414 1462 aaKnown RBP22.13■■□□□ 1.13
VARS-228ENST00000495010 ADGRL2O95490 1459 aa22.09■■□□□ 1.13
VARS-228ENST00000495010 RPRD2Q5VT52 1461 aaKnown RBP22.09■■□□□ 1.13
VARS-228ENST00000495010 NWD1Q149M9 1564 aa22.09■■□□□ 1.13
VARS-228ENST00000495010 POTEAQ6S8J7 498 aa22.09■■□□□ 1.13
VARS-228ENST00000495010 SLAIN2Q9P270 581 aa22.09■■□□□ 1.13
VARS-228ENST00000495010 ANKRD50Q9ULJ7 1429 aa22.08■■□□□ 1.13
VARS-228ENST00000495010 CHGAP10645 457 aaKnown RBP22.07■■□□□ 1.12
VARS-228ENST00000495010 PLEKHG1Q9ULL1 1385 aa22.07■■□□□ 1.12
VARS-228ENST00000495010 RIMS2Q9UQ26 1411 aa22.06■■□□□ 1.12
VARS-228ENST00000495010 C14orf37Q86TY3 774 aa22.05■■□□□ 1.12
VARS-228ENST00000495010 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.04■■□□□ 1.12
VARS-228ENST00000495010 PHLPP1O60346 1717 aa22.03■■□□□ 1.12
VARS-228ENST00000495010 JCADQ9P266 1359 aa22.03■■□□□ 1.12
VARS-228ENST00000495010 ZFYVE9O95405 1425 aa22.03■■□□□ 1.12
VARS-228ENST00000495010 TBX22Q9Y458 520 aa22.02■■□□□ 1.12
VARS-228ENST00000495010 GCC2Q8IWJ2 1684 aa22.01■■□□□ 1.11
VARS-228ENST00000495010 CHD2O14647 1828 aaKnown RBP22.01■■□□□ 1.11
VARS-228ENST00000495010 MYO5BQ9ULV0 1848 aa22■■□□□ 1.11
VARS-228ENST00000495010 TMEM131LA2VDJ0 1609 aa21.98■■□□□ 1.11
VARS-228ENST00000495010 NCOA3Q9Y6Q9 1424 aa21.97■■□□□ 1.11
VARS-228ENST00000495010 NUTM2DQ5VT03 806 aaPredicted RBP21.97■■□□□ 1.11
VARS-228ENST00000495010 ATF3P18847 181 aa21.96■■□□□ 1.11
VARS-228ENST00000495010 MEX3CQ5U5Q3 659 aaKnown RBP21.96■■□□□ 1.11
VARS-228ENST00000495010 CADPS2Q86UW7 1296 aa21.95■■□□□ 1.1
VARS-228ENST00000495010 UNC13BO14795 1591 aa21.93■■□□□ 1.1
VARS-228ENST00000495010 SPATA31A6Q5VVP1 1343 aa21.93■■□□□ 1.1
VARS-228ENST00000495010 C19orf44Q9H6X5 657 aa21.93■■□□□ 1.1
VARS-228ENST00000495010 DIP2AQ14689 1571 aa21.91■■□□□ 1.1
VARS-228ENST00000495010 PIK3R4Q99570 1358 aa21.91■■□□□ 1.1
VARS-228ENST00000495010 COL16A1Q07092 1604 aaPredicted RBP21.91■■□□□ 1.1
VARS-228ENST00000495010 ADAMTS13Q76LX8 1427 aa21.9■■□□□ 1.1
VARS-228ENST00000495010 ZNF772Q68DY9 489 aaPredicted RBP21.9■■□□□ 1.1
VARS-228ENST00000495010 E9PCH4 1651 aa21.9■■□□□ 1.1
VARS-228ENST00000495010 AMOTL2Q9Y2J4 779 aa21.88■■□□□ 1.09
VARS-228ENST00000495010 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.88■■□□□ 1.09
VARS-228ENST00000495010 ROCK1Q13464 1354 aa21.87■■□□□ 1.09
VARS-228ENST00000495010 TRPM2O94759 1503 aa21.87■■□□□ 1.09
VARS-228ENST00000495010 SETD1AO15047 1707 aaKnown RBP21.87■■□□□ 1.09
VARS-228ENST00000495010 NUP155O75694 1391 aa21.87■■□□□ 1.09
VARS-228ENST00000495010 IQGAP3Q86VI3 1631 aa21.85■■□□□ 1.09
VARS-228ENST00000495010 LRP6O75581 1613 aa21.84■■□□□ 1.09
VARS-228ENST00000495010 AHDC1Q5TGY3 1603 aaPredicted RBP21.84■■□□□ 1.09
VARS-228ENST00000495010 ITGAEP38570 1179 aa21.84■■□□□ 1.09
VARS-228ENST00000495010 TRIM52Q96A61 297 aa21.83■■□□□ 1.09
VARS-228ENST00000495010 ZNF326Q5BKZ1 582 aaKnown RBP21.82■■□□□ 1.08
VARS-228ENST00000495010 NUTM2BA6NNL0 878 aaPredicted RBP21.81■■□□□ 1.08
VARS-228ENST00000495010 NUTM2EB1AL46 878 aaPredicted RBP21.81■■□□□ 1.08
VARS-228ENST00000495010 BRINP3Q76B58 766 aa21.81■■□□□ 1.08
VARS-228ENST00000495010 NUTM2AQ8IVF1 878 aaPredicted RBP21.81■■□□□ 1.08
VARS-228ENST00000495010 SHPRHQ149N8 1683 aa21.81■■□□□ 1.08
VARS-228ENST00000495010 PTPRUQ92729 1446 aa21.8■■□□□ 1.08
VARS-228ENST00000495010 RXRBP28702 533 aa21.79■■□□□ 1.08
VARS-228ENST00000495010 DCCP43146 1447 aa21.77■■□□□ 1.08
VARS-228ENST00000495010 UPF1Q92900 1129 aaKnown RBP eCLIP21.75■■□□□ 1.07
VARS-228ENST00000495010 LRRC59Q96AG4 307 aaKnown RBP21.73■■□□□ 1.07
VARS-228ENST00000495010 ASXL1Q8IXJ9 1541 aa21.73■■□□□ 1.07
VARS-228ENST00000495010 SETBP1Q9Y6X0 1596 aa21.72■■□□□ 1.07
VARS-228ENST00000495010 AFF2P51816 1311 aa21.71■■□□□ 1.07
VARS-228ENST00000495010 SPHKAPQ2M3C7 1700 aa21.71■■□□□ 1.07
VARS-228ENST00000495010 XRN1Q8IZH2 1706 aaKnown RBP21.71■■□□□ 1.07
VARS-228ENST00000495010 MST1RQ04912 1400 aa21.71■■□□□ 1.07
VARS-228ENST00000495010 NRXN3Q9Y4C0 1643 aa21.7■■□□□ 1.06
VARS-228ENST00000495010 METP08581 1390 aa21.7■■□□□ 1.06
VARS-228ENST00000495010 SETD5Q9C0A6 1442 aa21.7■■□□□ 1.06
VARS-228ENST00000495010 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
VARS-228ENST00000495010 C8orf37Q96NL8 207 aa21.67■■□□□ 1.06
VARS-228ENST00000495010 CDK12Q9NYV4 1490 aaPredicted RBP21.66■■□□□ 1.06
VARS-228ENST00000495010 ADGRL3Q9HAR2 1447 aa21.66■■□□□ 1.06
VARS-228ENST00000495010 NHSL1Q5SYE7 1610 aa21.66■■□□□ 1.06
VARS-228ENST00000495010 DDX17Q92841 729 aaKnown RBP21.64■■□□□ 1.05
VARS-228ENST00000495010 QTRT2Q9H974 415 aaKnown RBP21.64■■□□□ 1.05
VARS-228ENST00000495010 PNPLA6Q8IY17 1366 aa21.61■■□□□ 1.05
VARS-228ENST00000495010 NEXMIFQ5QGS0 1516 aa21.61■■□□□ 1.05
VARS-228ENST00000495010 RBM6P78332 1123 aaKnown RBP21.61■■□□□ 1.05
VARS-228ENST00000495010 CLTCL1P53675 1640 aa21.6■■□□□ 1.05
VARS-228ENST00000495010 NGLY1Q96IV0 654 aa21.6■■□□□ 1.05
VARS-228ENST00000495010 VGFO15240 615 aaPredicted RBP21.59■■□□□ 1.05
VARS-228ENST00000495010 ADAMTS2O95450 1211 aa21.59■■□□□ 1.05
VARS-228ENST00000495010 NALCNQ8IZF0 1738 aa21.59■■□□□ 1.05
VARS-228ENST00000495010 KIF1BO60333 1816 aa21.59■■□□□ 1.05
VARS-228ENST00000495010 C1orf167Q5SNV9 1468 aa21.58■■□□□ 1.04
VARS-228ENST00000495010 RGS12O14924 1447 aa21.55■■□□□ 1.04
VARS-228ENST00000495010 PTCH1Q13635 1447 aa21.54■■□□□ 1.04
VARS-228ENST00000495010 ORAI2Q96SN7 254 aa21.53■■□□□ 1.04
VARS-228ENST00000495010 USP21Q9UK80 565 aa21.52■■□□□ 1.04
VARS-228ENST00000495010 RPGRIP1LQ68CZ1 1315 aa21.52■■□□□ 1.03
VARS-228ENST00000495010 ROBO2Q9HCK4 1378 aa21.51■■□□□ 1.03
VARS-228ENST00000495010 SOS2Q07890 1332 aaPredicted RBP21.51■■□□□ 1.03
VARS-228ENST00000495010 NAIPQ13075 1403 aa21.49■■□□□ 1.03
VARS-228ENST00000495010 TRPC5Q9UL62 973 aaPredicted RBP21.49■■□□□ 1.03
VARS-228ENST00000495010 ATAD2Q6PL18 1390 aa21.48■■□□□ 1.03
VARS-228ENST00000495010 LAMC1P11047 1609 aa21.47■■□□□ 1.03
VARS-228ENST00000495010 HFM1A2PYH4 1435 aa21.47■■□□□ 1.03
VARS-228ENST00000495010 SLC4A1APQ9BWU0 796 aaKnown RBP21.47■■□□□ 1.03
VARS-228ENST00000495010 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
VARS-228ENST00000495010 FOXD1Q16676 465 aa21.45■■□□□ 1.02
VARS-228ENST00000495010 RRBP1Q9P2E9 1410 aaKnown RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms