RNA–Protein interactions for RNA: ENST00000493356.5

PFDN4-205, Transcript of prefoldin subunit 4, human

TSL 3

Gene PFDN4, Length 659 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PFDN4-205	ENST00000493356	RPRD2	Q5VT52	1461 aa	Known RBP	33.44	■■■□□ 2.94
PFDN4-205	ENST00000493356	ANKRD50	Q9ULJ7	1429 aa		33.42	■■■□□ 2.94
PFDN4-205	ENST00000493356	MYO5B	Q9ULV0	1848 aa		33.4	■■■□□ 2.94
PFDN4-205	ENST00000493356	ZFYVE9	O95405	1425 aa		33.39	■■■□□ 2.94
PFDN4-205	ENST00000493356	FAM50A	Q14320	339 aa	Known RBP	33.38	■■■□□ 2.93
PFDN4-205	ENST00000493356	BCAN	Q96GW7	911 aa		33.38	■■■□□ 2.93
PFDN4-205	ENST00000493356	GCC2	Q8IWJ2	1684 aa		33.37	■■■□□ 2.93
PFDN4-205	ENST00000493356	MSH6	P52701	1360 aa		33.35	■■■□□ 2.93
PFDN4-205	ENST00000493356	CHD2	O14647	1828 aa	Known RBP	33.35	■■■□□ 2.93
PFDN4-205	ENST00000493356	PLEKHG1	Q9ULL1	1385 aa		33.34	■■■□□ 2.93
PFDN4-205	ENST00000493356	TMEM131L	A2VDJ0	1609 aa		33.34	■■■□□ 2.93
PFDN4-205	ENST00000493356	RIMS2	Q9UQ26	1411 aa		33.33	■■■□□ 2.93
PFDN4-205	ENST00000493356	POTEA	Q6S8J7	498 aa		33.3	■■■□□ 2.92
PFDN4-205	ENST00000493356	UNC13B	O14795	1591 aa		33.3	■■■□□ 2.92
PFDN4-205	ENST00000493356	PPP1R15A	O75807	674 aa	Predicted RBP	33.28	■■■□□ 2.92
PFDN4-205	ENST00000493356	SLAIN2	Q9P270	581 aa		33.28	■■■□□ 2.92
PFDN4-205	ENST00000493356	PHLPP1	O60346	1717 aa		33.28	■■■□□ 2.92
PFDN4-205	ENST00000493356	HDGF	P51858	240 aa	Known RBP	33.27	■■■□□ 2.92
PFDN4-205	ENST00000493356		E9PCH4	1651 aa		33.23	■■■□□ 2.91
PFDN4-205	ENST00000493356	TBX22	Q9Y458	520 aa		33.23	■■■□□ 2.91
PFDN4-205	ENST00000493356	JCAD	Q9P266	1359 aa		33.2	■■■□□ 2.9
PFDN4-205	ENST00000493356	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.19	■■■□□ 2.9
PFDN4-205	ENST00000493356	NCOA3	Q9Y6Q9	1424 aa		33.19	■■■□□ 2.9
PFDN4-205	ENST00000493356	CHGA	P10645	457 aa	Known RBP	33.18	■■■□□ 2.9
PFDN4-205	ENST00000493356	ADAMTS13	Q76LX8	1427 aa		33.18	■■■□□ 2.9
PFDN4-205	ENST00000493356	COL16A1	Q07092	1604 aa	Predicted RBP	33.17	■■■□□ 2.9
PFDN4-205	ENST00000493356	DIP2A	Q14689	1571 aa		33.16	■■■□□ 2.9
PFDN4-205	ENST00000493356	IQGAP3	Q86VI3	1631 aa		33.16	■■■□□ 2.9
PFDN4-205	ENST00000493356	ROCK1	Q13464	1354 aa		33.13	■■■□□ 2.89
PFDN4-205	ENST00000493356	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.13	■■■□□ 2.89
PFDN4-205	ENST00000493356	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.11	■■■□□ 2.89
PFDN4-205	ENST00000493356	PIK3R4	Q99570	1358 aa		33.11	■■■□□ 2.89
PFDN4-205	ENST00000493356	C14orf37	Q86TY3	774 aa		33.11	■■■□□ 2.89
PFDN4-205	ENST00000493356	SETD1A	O15047	1707 aa	Known RBP	33.08	■■■□□ 2.89
PFDN4-205	ENST00000493356	CADPS2	Q86UW7	1296 aa		33.06	■■■□□ 2.88
PFDN4-205	ENST00000493356	C19orf44	Q9H6X5	657 aa		33.06	■■■□□ 2.88
PFDN4-205	ENST00000493356	AHDC1	Q5TGY3	1603 aa	Predicted RBP	33.06	■■■□□ 2.88
PFDN4-205	ENST00000493356	TRPM2	O94759	1503 aa		33.05	■■■□□ 2.88
PFDN4-205	ENST00000493356	LRP6	O75581	1613 aa		33.04	■■■□□ 2.88
PFDN4-205	ENST00000493356	NUP155	O75694	1391 aa		33.04	■■■□□ 2.88
PFDN4-205	ENST00000493356	ATF3	P18847	181 aa		33.03	■■■□□ 2.88
PFDN4-205	ENST00000493356	SPATA31A6	Q5VVP1	1343 aa		33.02	■■■□□ 2.88
PFDN4-205	ENST00000493356	PTPRU	Q92729	1446 aa		33.01	■■■□□ 2.87
PFDN4-205	ENST00000493356	SHPRH	Q149N8	1683 aa		33	■■■□□ 2.87
PFDN4-205	ENST00000493356	AMOTL2	Q9Y2J4	779 aa		32.99	■■■□□ 2.87
PFDN4-205	ENST00000493356	NRXN3	Q9Y4C0	1643 aa		32.96	■■■□□ 2.87
PFDN4-205	ENST00000493356	XRN1	Q8IZH2	1706 aa	Known RBP	32.94	■■■□□ 2.86
PFDN4-205	ENST00000493356	SPHKAP	Q2M3C7	1700 aa		32.94	■■■□□ 2.86
PFDN4-205	ENST00000493356	SETBP1	Q9Y6X0	1596 aa		32.93	■■■□□ 2.86
PFDN4-205	ENST00000493356	MEX3C	Q5U5Q3	659 aa	Known RBP	32.93	■■■□□ 2.86
PFDN4-205	ENST00000493356	ITGAE	P38570	1179 aa		32.92	■■■□□ 2.86
PFDN4-205	ENST00000493356	BRINP3	Q76B58	766 aa		32.92	■■■□□ 2.86
PFDN4-205	ENST00000493356	DCC	P43146	1447 aa		32.92	■■■□□ 2.86
PFDN4-205	ENST00000493356	ZNF772	Q68DY9	489 aa	Predicted RBP	32.9	■■■□□ 2.86
PFDN4-205	ENST00000493356	ASXL1	Q8IXJ9	1541 aa		32.87	■■■□□ 2.85
PFDN4-205	ENST00000493356	MST1R	Q04912	1400 aa		32.84	■■■□□ 2.85
PFDN4-205	ENST00000493356	MET	P08581	1390 aa		32.83	■■■□□ 2.85
PFDN4-205	ENST00000493356	NHSL1	Q5SYE7	1610 aa		32.82	■■■□□ 2.84
PFDN4-205	ENST00000493356	ZNF326	Q5BKZ1	582 aa	Known RBP	32.82	■■■□□ 2.84
PFDN4-205	ENST00000493356	SETD5	Q9C0A6	1442 aa		32.8	■■■□□ 2.84
PFDN4-205	ENST00000493356	TRIM52	Q96A61	297 aa		32.8	■■■□□ 2.84
PFDN4-205	ENST00000493356	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.79	■■■□□ 2.84
PFDN4-205	ENST00000493356	NUTM2E	B1AL46	878 aa	Predicted RBP	32.79	■■■□□ 2.84
PFDN4-205	ENST00000493356	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.79	■■■□□ 2.84
PFDN4-205	ENST00000493356	NEXMIF	Q5QGS0	1516 aa		32.77	■■■□□ 2.84
PFDN4-205	ENST00000493356	CLTCL1	P53675	1640 aa		32.77	■■■□□ 2.84
PFDN4-205	ENST00000493356	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.76	■■■□□ 2.83
PFDN4-205	ENST00000493356	ADGRL3	Q9HAR2	1447 aa		32.76	■■■□□ 2.83
PFDN4-205	ENST00000493356	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.75	■■■□□ 2.83
PFDN4-205	ENST00000493356	NALCN	Q8IZF0	1738 aa		32.74	■■■□□ 2.83
PFDN4-205	ENST00000493356	RXRB	P28702	533 aa		32.74	■■■□□ 2.83
PFDN4-205	ENST00000493356	AFF2	P51816	1311 aa		32.71	■■■□□ 2.83
PFDN4-205	ENST00000493356	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.7	■■■□□ 2.83
PFDN4-205	ENST00000493356	LRRC59	Q96AG4	307 aa	Known RBP	32.7	■■■□□ 2.83
PFDN4-205	ENST00000493356	KIF1B	O60333	1816 aa		32.7	■■■□□ 2.82
PFDN4-205	ENST00000493356	DDX17	Q92841	729 aa	Known RBP	32.67	■■■□□ 2.82
PFDN4-205	ENST00000493356	PNPLA6	Q8IY17	1366 aa		32.65	■■■□□ 2.82
PFDN4-205	ENST00000493356	NAIP	Q13075	1403 aa		32.61	■■■□□ 2.81
PFDN4-205	ENST00000493356	C1orf167	Q5SNV9	1468 aa		32.61	■■■□□ 2.81
PFDN4-205	ENST00000493356	C8orf37	Q96NL8	207 aa		32.6	■■■□□ 2.81
PFDN4-205	ENST00000493356	PTCH1	Q13635	1447 aa		32.6	■■■□□ 2.81
PFDN4-205	ENST00000493356	LAMC1	P11047	1609 aa		32.59	■■■□□ 2.81
PFDN4-205	ENST00000493356	RRBP1	Q9P2E9	1410 aa	Known RBP	32.58	■■■□□ 2.81
PFDN4-205	ENST00000493356	ROBO2	Q9HCK4	1378 aa		32.56	■■■□□ 2.8
PFDN4-205	ENST00000493356	RGS12	O14924	1447 aa		32.54	■■■□□ 2.8
PFDN4-205	ENST00000493356	VGF	O15240	615 aa	Predicted RBP	32.54	■■■□□ 2.8
PFDN4-205	ENST00000493356	QTRT2	Q9H974	415 aa	Known RBP	32.54	■■■□□ 2.8
PFDN4-205	ENST00000493356	PRAG1	Q86YV5	1406 aa		32.52	■■■□□ 2.8
PFDN4-205	ENST00000493356	RBM6	P78332	1123 aa	Known RBP	32.52	■■■□□ 2.8
PFDN4-205	ENST00000493356	ORAI2	Q96SN7	254 aa		32.5	■■■□□ 2.79
PFDN4-205	ENST00000493356	SOS2	Q07890	1332 aa	Predicted RBP	32.5	■■■□□ 2.79
PFDN4-205	ENST00000493356	ADAMTS2	O95450	1211 aa		32.49	■■■□□ 2.79
PFDN4-205	ENST00000493356	RPGRIP1L	Q68CZ1	1315 aa		32.48	■■■□□ 2.79
PFDN4-205	ENST00000493356	PPL	O60437	1756 aa		32.47	■■■□□ 2.79
PFDN4-205	ENST00000493356	NGLY1	Q96IV0	654 aa		32.47	■■■□□ 2.79
PFDN4-205	ENST00000493356	HFM1	A2PYH4	1435 aa		32.44	■■■□□ 2.78
PFDN4-205	ENST00000493356	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.41	■■■□□ 2.78
PFDN4-205	ENST00000493356	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.4	■■■□□ 2.78
PFDN4-205	ENST00000493356	CDC42BPG	Q6DT37	1551 aa		32.37	■■■□□ 2.77
PFDN4-205	ENST00000493356	USP21	Q9UK80	565 aa		32.37	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms