RNA–Protein interactions for RNA: ENST00000489451.1

ACTN4-206, Transcript of actinin alpha 4, humanhuman

TSL 3

Gene ACTN4, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-206ENST00000489451 TMEM131LA2VDJ0 1609 aa18.26■□□□□ 0.51
ACTN4-206ENST00000489451 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
ACTN4-206ENST00000489451 UPF1Q92900 1129 aaKnown RBP eCLIP18.23■□□□□ 0.51
ACTN4-206ENST00000489451 SLC26A8Q96RN1 970 aa18.23■□□□□ 0.51
ACTN4-206ENST00000489451 SLC52A1Q9NWF4 448 aa18.23■□□□□ 0.51
ACTN4-206ENST00000489451 IQGAP3Q86VI3 1631 aa18.23■□□□□ 0.51
ACTN4-206ENST00000489451 TMEM94Q12767 1356 aa18.22■□□□□ 0.51
ACTN4-206ENST00000489451 ROCK1Q13464 1354 aa18.22■□□□□ 0.51
ACTN4-206ENST00000489451 KCNA6P17658 529 aa18.2■□□□□ 0.5
ACTN4-206ENST00000489451 RBM33Q96EV2 1170 aaKnown RBP18.2■□□□□ 0.5
ACTN4-206ENST00000489451 NKTRP30414 1462 aaKnown RBP18.2■□□□□ 0.5
ACTN4-206ENST00000489451 CHD2O14647 1828 aaKnown RBP18.19■□□□□ 0.5
ACTN4-206ENST00000489451 RIMS2Q9UQ26 1411 aa18.18■□□□□ 0.5
ACTN4-206ENST00000489451 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
ACTN4-206ENST00000489451 ROBO1Q9Y6N7 1651 aa18.17■□□□□ 0.5
ACTN4-206ENST00000489451 FAM135BQ49AJ0 1406 aa18.16■□□□□ 0.5
ACTN4-206ENST00000489451 ADAMTS13Q76LX8 1427 aa18.15■□□□□ 0.5
ACTN4-206ENST00000489451 PPARGC1BQ86YN6 1023 aaKnown RBP18.14■□□□□ 0.49
ACTN4-206ENST00000489451 PROSER2Q86WR7 435 aaPredicted RBP18.12■□□□□ 0.49
ACTN4-206ENST00000489451 NUP155O75694 1391 aa18.1■□□□□ 0.49
ACTN4-206ENST00000489451 TRIM52Q96A61 297 aa18.1■□□□□ 0.49
ACTN4-206ENST00000489451 SPHKAPQ2M3C7 1700 aa18.09■□□□□ 0.49
ACTN4-206ENST00000489451 ITGAEP38570 1179 aa18.09■□□□□ 0.49
ACTN4-206ENST00000489451 NUTM2DQ5VT03 806 aaPredicted RBP18.09■□□□□ 0.49
ACTN4-206ENST00000489451 NRXN3Q9Y4C0 1643 aa18.09■□□□□ 0.49
ACTN4-206ENST00000489451 DIP2AQ14689 1571 aa18.08■□□□□ 0.49
ACTN4-206ENST00000489451 PHLPP1O60346 1717 aa18.07■□□□□ 0.48
ACTN4-206ENST00000489451 BCANQ96GW7 911 aa18.07■□□□□ 0.48
ACTN4-206ENST00000489451 TBX22Q9Y458 520 aa18.07■□□□□ 0.48
ACTN4-206ENST00000489451 PPP1R15AO75807 674 aaPredicted RBP18.06■□□□□ 0.48
ACTN4-206ENST00000489451 CHGAP10645 457 aaKnown RBP18.06■□□□□ 0.48
ACTN4-206ENST00000489451 PTPRUQ92729 1446 aa18.06■□□□□ 0.48
ACTN4-206ENST00000489451 MSH6P52701 1360 aa18.05■□□□□ 0.48
ACTN4-206ENST00000489451 RRBP1Q9P2E9 1410 aaKnown RBP18.05■□□□□ 0.48
ACTN4-206ENST00000489451 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.04■□□□□ 0.48
ACTN4-206ENST00000489451 COL16A1Q07092 1604 aaPredicted RBP18.03■□□□□ 0.48
ACTN4-206ENST00000489451 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.03■□□□□ 0.48
ACTN4-206ENST00000489451 CLTCL1P53675 1640 aa18.02■□□□□ 0.48
ACTN4-206ENST00000489451 XRN1Q8IZH2 1706 aaKnown RBP18.02■□□□□ 0.48
ACTN4-206ENST00000489451 NCOA3Q9Y6Q9 1424 aa18.02■□□□□ 0.48
ACTN4-206ENST00000489451 SETBP1Q9Y6X0 1596 aa18.02■□□□□ 0.48
ACTN4-206ENST00000489451 TRPM2O94759 1503 aa18.02■□□□□ 0.47
ACTN4-206ENST00000489451 SRCAPQ6ZRS2 3230 aa18.02■□□□□ 0.47
ACTN4-206ENST00000489451 HDGFP51858 240 aaKnown RBP18.01■□□□□ 0.47
ACTN4-206ENST00000489451 SLAIN2Q9P270 581 aa18.01■□□□□ 0.47
ACTN4-206ENST00000489451 PIK3R4Q99570 1358 aa18.01■□□□□ 0.47
ACTN4-206ENST00000489451 JCADQ9P266 1359 aa18.01■□□□□ 0.47
ACTN4-206ENST00000489451 NAIPQ13075 1403 aa18■□□□□ 0.47
ACTN4-206ENST00000489451 ZNF772Q68DY9 489 aaPredicted RBP18■□□□□ 0.47
ACTN4-206ENST00000489451 MEX3CQ5U5Q3 659 aaKnown RBP17.99■□□□□ 0.47
ACTN4-206ENST00000489451 NEXMIFQ5QGS0 1516 aa17.98■□□□□ 0.47
ACTN4-206ENST00000489451 AHDC1Q5TGY3 1603 aaPredicted RBP17.96■□□□□ 0.47
ACTN4-206ENST00000489451 CDK12Q9NYV4 1490 aaPredicted RBP17.95■□□□□ 0.46
ACTN4-206ENST00000489451 LRP6O75581 1613 aa17.95■□□□□ 0.46
ACTN4-206ENST00000489451 AMOTL2Q9Y2J4 779 aa17.95■□□□□ 0.46
ACTN4-206ENST00000489451 METP08581 1390 aa17.94■□□□□ 0.46
ACTN4-206ENST00000489451 RXRBP28702 533 aa17.94■□□□□ 0.46
ACTN4-206ENST00000489451 C19orf44Q9H6X5 657 aa17.92■□□□□ 0.46
ACTN4-206ENST00000489451 KIF1BO60333 1816 aa17.92■□□□□ 0.46
ACTN4-206ENST00000489451 HFM1A2PYH4 1435 aa17.9■□□□□ 0.46
ACTN4-206ENST00000489451 SHPRHQ149N8 1683 aa17.9■□□□□ 0.46
ACTN4-206ENST00000489451 NALCNQ8IZF0 1738 aa17.9■□□□□ 0.46
ACTN4-206ENST00000489451 CADPS2Q86UW7 1296 aa17.9■□□□□ 0.46
ACTN4-206ENST00000489451 DCCP43146 1447 aa17.89■□□□□ 0.46
ACTN4-206ENST00000489451 C14orf37Q86TY3 774 aa17.89■□□□□ 0.45
ACTN4-206ENST00000489451 SPATA31A6Q5VVP1 1343 aa17.89■□□□□ 0.45
ACTN4-206ENST00000489451 MST1RQ04912 1400 aa17.89■□□□□ 0.45
ACTN4-206ENST00000489451 FOXD1Q16676 465 aa17.88■□□□□ 0.45
ACTN4-206ENST00000489451 ZNF326Q5BKZ1 582 aaKnown RBP17.88■□□□□ 0.45
ACTN4-206ENST00000489451 BRINP3Q76B58 766 aa17.88■□□□□ 0.45
ACTN4-206ENST00000489451 ASXL1Q8IXJ9 1541 aa17.88■□□□□ 0.45
ACTN4-206ENST00000489451 NHSL1Q5SYE7 1610 aa17.87■□□□□ 0.45
ACTN4-206ENST00000489451 ATF3P18847 181 aa17.87■□□□□ 0.45
ACTN4-206ENST00000489451 ZRANB1Q9UGI0 708 aa17.86■□□□□ 0.45
ACTN4-206ENST00000489451 ADGRL3Q9HAR2 1447 aa17.85■□□□□ 0.45
ACTN4-206ENST00000489451 PPLO60437 1756 aa17.84■□□□□ 0.45
ACTN4-206ENST00000489451 RGS12O14924 1447 aa17.82■□□□□ 0.44
ACTN4-206ENST00000489451 PRAG1Q86YV5 1406 aa17.81■□□□□ 0.44
ACTN4-206ENST00000489451 NUTM2BA6NNL0 878 aaPredicted RBP17.81■□□□□ 0.44
ACTN4-206ENST00000489451 NUTM2EB1AL46 878 aaPredicted RBP17.81■□□□□ 0.44
ACTN4-206ENST00000489451 NUTM2AQ8IVF1 878 aaPredicted RBP17.81■□□□□ 0.44
ACTN4-206ENST00000489451 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
ACTN4-206ENST00000489451 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
ACTN4-206ENST00000489451 ROBO2Q9HCK4 1378 aa17.79■□□□□ 0.44
ACTN4-206ENST00000489451 DDX17Q92841 729 aaKnown RBP17.78■□□□□ 0.44
ACTN4-206ENST00000489451 LAMC1P11047 1609 aa17.78■□□□□ 0.44
ACTN4-206ENST00000489451 SLC4A1APQ9BWU0 796 aaKnown RBP17.77■□□□□ 0.44
ACTN4-206ENST00000489451 IFT172Q9UG01 1749 aa17.77■□□□□ 0.44
ACTN4-206ENST00000489451 C1orf167Q5SNV9 1468 aa17.76■□□□□ 0.43
ACTN4-206ENST00000489451 AFF2P51816 1311 aa17.75■□□□□ 0.43
ACTN4-206ENST00000489451 ATAD2Q6PL18 1390 aa17.75■□□□□ 0.43
ACTN4-206ENST00000489451 PNPLA6Q8IY17 1366 aa17.74■□□□□ 0.43
ACTN4-206ENST00000489451 RPGRIP1LQ68CZ1 1315 aa17.73■□□□□ 0.43
ACTN4-206ENST00000489451 SPATA31E1Q6ZUB1 1445 aa17.73■□□□□ 0.43
ACTN4-206ENST00000489451 VGFO15240 615 aaPredicted RBP17.73■□□□□ 0.43
ACTN4-206ENST00000489451 ADGRF5Q8IZF2 1346 aa17.71■□□□□ 0.42
ACTN4-206ENST00000489451 RBM6P78332 1123 aaKnown RBP17.7■□□□□ 0.42
ACTN4-206ENST00000489451 ORAI2Q96SN7 254 aa17.69■□□□□ 0.42
ACTN4-206ENST00000489451 LRP5O75197 1615 aa17.69■□□□□ 0.42
ACTN4-206ENST00000489451 CDC42BPGQ6DT37 1551 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms