RNA–Protein interactions for RNA: ENST00000485424.1

UBA3-210, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 2

Gene UBA3, Length 652 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-210ENST00000485424 RPRD2Q5VT52 1461 aaKnown RBP20.53■□□□□ 0.88
UBA3-210ENST00000485424 IQGAP3Q86VI3 1631 aa20.5■□□□□ 0.87
UBA3-210ENST00000485424 IDI1Q13907 227 aa20.5■□□□□ 0.87
UBA3-210ENST00000485424 FAM50AQ14320 339 aaKnown RBP20.5■□□□□ 0.87
UBA3-210ENST00000485424 STAG3Q9UJ98 1225 aa20.5■□□□□ 0.87
UBA3-210ENST00000485424 NKTRP30414 1462 aaKnown RBP20.5■□□□□ 0.87
UBA3-210ENST00000485424 ANKRD50Q9ULJ7 1429 aa20.49■□□□□ 0.87
UBA3-210ENST00000485424 PHLPP1O60346 1717 aa20.47■□□□□ 0.87
UBA3-210ENST00000485424 ZFYVE9O95405 1425 aa20.45■□□□□ 0.86
UBA3-210ENST00000485424 TMEM94Q12767 1356 aa20.45■□□□□ 0.86
UBA3-210ENST00000485424 SPHKAPQ2M3C7 1700 aa20.44■□□□□ 0.86
UBA3-210ENST00000485424 FAM135BQ49AJ0 1406 aa20.42■□□□□ 0.86
UBA3-210ENST00000485424 MAPK8IP2Q13387 824 aaPredicted RBP20.41■□□□□ 0.86
UBA3-210ENST00000485424 SLC26A8Q96RN1 970 aa20.41■□□□□ 0.86
UBA3-210ENST00000485424 SLC52A1Q9NWF4 448 aa20.41■□□□□ 0.86
UBA3-210ENST00000485424 KCNA6P17658 529 aa20.4■□□□□ 0.86
UBA3-210ENST00000485424 DIP2AQ14689 1571 aa20.4■□□□□ 0.86
UBA3-210ENST00000485424 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.39■□□□□ 0.86
UBA3-210ENST00000485424 RIMS2Q9UQ26 1411 aa20.38■□□□□ 0.85
UBA3-210ENST00000485424 PLEKHG1Q9ULL1 1385 aa20.37■□□□□ 0.85
UBA3-210ENST00000485424 COL16A1Q07092 1604 aaPredicted RBP20.36■□□□□ 0.85
UBA3-210ENST00000485424 PROSER2Q86WR7 435 aaPredicted RBP20.35■□□□□ 0.85
UBA3-210ENST00000485424 RBM33Q96EV2 1170 aaKnown RBP20.35■□□□□ 0.85
UBA3-210ENST00000485424 SETD1AO15047 1707 aaKnown RBP20.35■□□□□ 0.85
UBA3-210ENST00000485424 NRXN3Q9Y4C0 1643 aa20.34■□□□□ 0.85
UBA3-210ENST00000485424 ROCK1Q13464 1354 aa20.34■□□□□ 0.85
UBA3-210ENST00000485424 MSH6P52701 1360 aa20.33■□□□□ 0.84
UBA3-210ENST00000485424 KIF1BO60333 1816 aa20.32■□□□□ 0.84
UBA3-210ENST00000485424 XRN1Q8IZH2 1706 aaKnown RBP20.31■□□□□ 0.84
UBA3-210ENST00000485424 RGS17Q9UGC6 210 aaPredicted RBP20.31■□□□□ 0.84
UBA3-210ENST00000485424 SHPRHQ149N8 1683 aa20.31■□□□□ 0.84
UBA3-210ENST00000485424 BCANQ96GW7 911 aa20.3■□□□□ 0.84
UBA3-210ENST00000485424 TRPM2O94759 1503 aa20.3■□□□□ 0.84
UBA3-210ENST00000485424 ADAMTS13Q76LX8 1427 aa20.29■□□□□ 0.84
UBA3-210ENST00000485424 PPP1R15AO75807 674 aaPredicted RBP20.28■□□□□ 0.84
UBA3-210ENST00000485424 AHDC1Q5TGY3 1603 aaPredicted RBP20.27■□□□□ 0.83
UBA3-210ENST00000485424 ITGAEP38570 1179 aa20.26■□□□□ 0.83
UBA3-210ENST00000485424 SETBP1Q9Y6X0 1596 aa20.25■□□□□ 0.83
UBA3-210ENST00000485424 CLTCL1P53675 1640 aa20.24■□□□□ 0.83
UBA3-210ENST00000485424 PPARGC1BQ86YN6 1023 aaKnown RBP20.24■□□□□ 0.83
UBA3-210ENST00000485424 NCOA3Q9Y6Q9 1424 aa20.24■□□□□ 0.83
UBA3-210ENST00000485424 CHGAP10645 457 aaKnown RBP20.23■□□□□ 0.83
UBA3-210ENST00000485424 HDGFP51858 240 aaKnown RBP20.23■□□□□ 0.83
UBA3-210ENST00000485424 NALCNQ8IZF0 1738 aa20.23■□□□□ 0.83
UBA3-210ENST00000485424 NHSL1Q5SYE7 1610 aa20.23■□□□□ 0.83
UBA3-210ENST00000485424 PIK3R4Q99570 1358 aa20.22■□□□□ 0.83
UBA3-210ENST00000485424 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.22■□□□□ 0.83
UBA3-210ENST00000485424 SLAIN2Q9P270 581 aa20.22■□□□□ 0.83
UBA3-210ENST00000485424 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
UBA3-210ENST00000485424 NUP155O75694 1391 aa20.21■□□□□ 0.83
UBA3-210ENST00000485424 NUTM2DQ5VT03 806 aaPredicted RBP20.21■□□□□ 0.83
UBA3-210ENST00000485424 JCADQ9P266 1359 aa20.19■□□□□ 0.82
UBA3-210ENST00000485424 PTPRUQ92729 1446 aa20.19■□□□□ 0.82
UBA3-210ENST00000485424 NEXMIFQ5QGS0 1516 aa20.18■□□□□ 0.82
UBA3-210ENST00000485424 LRP6O75581 1613 aa20.18■□□□□ 0.82
UBA3-210ENST00000485424 POTEAQ6S8J7 498 aa20.18■□□□□ 0.82
UBA3-210ENST00000485424 PPLO60437 1756 aa20.16■□□□□ 0.82
UBA3-210ENST00000485424 C14orf37Q86TY3 774 aa20.14■□□□□ 0.81
UBA3-210ENST00000485424 DCCP43146 1447 aa20.13■□□□□ 0.81
UBA3-210ENST00000485424 ASXL1Q8IXJ9 1541 aa20.12■□□□□ 0.81
UBA3-210ENST00000485424 CADPS2Q86UW7 1296 aa20.11■□□□□ 0.81
UBA3-210ENST00000485424 C19orf44Q9H6X5 657 aa20.1■□□□□ 0.81
UBA3-210ENST00000485424 AMOTL2Q9Y2J4 779 aa20.09■□□□□ 0.81
UBA3-210ENST00000485424 RRBP1Q9P2E9 1410 aaKnown RBP20.09■□□□□ 0.81
UBA3-210ENST00000485424 ATF3P18847 181 aa20.08■□□□□ 0.81
UBA3-210ENST00000485424 SPATA31A6Q5VVP1 1343 aa20.07■□□□□ 0.8
UBA3-210ENST00000485424 LAMC1P11047 1609 aa20.07■□□□□ 0.8
UBA3-210ENST00000485424 MST1RQ04912 1400 aa20.07■□□□□ 0.8
UBA3-210ENST00000485424 IFT172Q9UG01 1749 aa20.05■□□□□ 0.8
UBA3-210ENST00000485424 NAIPQ13075 1403 aa20.05■□□□□ 0.8
UBA3-210ENST00000485424 METP08581 1390 aa20.05■□□□□ 0.8
UBA3-210ENST00000485424 ADGRL3Q9HAR2 1447 aa20.04■□□□□ 0.8
UBA3-210ENST00000485424 ZNF326Q5BKZ1 582 aaKnown RBP20.03■□□□□ 0.8
UBA3-210ENST00000485424 BRINP3Q76B58 766 aa20.03■□□□□ 0.8
UBA3-210ENST00000485424 MARF1Q9Y4F3 1742 aaKnown RBP20.01■□□□□ 0.79
UBA3-210ENST00000485424 SETD5Q9C0A6 1442 aa20■□□□□ 0.79
UBA3-210ENST00000485424 MEX3CQ5U5Q3 659 aaKnown RBP19.99■□□□□ 0.79
UBA3-210ENST00000485424 PTCH1Q13635 1447 aa19.98■□□□□ 0.79
UBA3-210ENST00000485424 HFM1A2PYH4 1435 aa19.96■□□□□ 0.79
UBA3-210ENST00000485424 TRIM52Q96A61 297 aa19.96■□□□□ 0.79
UBA3-210ENST00000485424 ZNF772Q68DY9 489 aaPredicted RBP19.95■□□□□ 0.78
UBA3-210ENST00000485424 KNDC1Q76NI1 1749 aa19.95■□□□□ 0.78
UBA3-210ENST00000485424 PRAG1Q86YV5 1406 aa19.94■□□□□ 0.78
UBA3-210ENST00000485424 COL22A1Q8NFW1 1626 aaPredicted RBP19.94■□□□□ 0.78
UBA3-210ENST00000485424 CDK12Q9NYV4 1490 aaPredicted RBP19.92■□□□□ 0.78
UBA3-210ENST00000485424 C1orf167Q5SNV9 1468 aa19.92■□□□□ 0.78
UBA3-210ENST00000485424 CDC42BPGQ6DT37 1551 aa19.91■□□□□ 0.78
UBA3-210ENST00000485424 NUTM2BA6NNL0 878 aaPredicted RBP19.91■□□□□ 0.78
UBA3-210ENST00000485424 NUTM2EB1AL46 878 aaPredicted RBP19.91■□□□□ 0.78
UBA3-210ENST00000485424 NUTM2AQ8IVF1 878 aaPredicted RBP19.91■□□□□ 0.78
UBA3-210ENST00000485424 PNPLA6Q8IY17 1366 aa19.91■□□□□ 0.78
UBA3-210ENST00000485424 RGPD8O14715 1765 aaPredicted RBP19.9■□□□□ 0.78
UBA3-210ENST00000485424 CACNB1Q02641 598 aaPredicted RBP19.89■□□□□ 0.77
UBA3-210ENST00000485424 DDX17Q92841 729 aaKnown RBP19.89■□□□□ 0.77
UBA3-210ENST00000485424 ROBO2Q9HCK4 1378 aa19.89■□□□□ 0.77
UBA3-210ENST00000485424 AFF2P51816 1311 aa19.88■□□□□ 0.77
UBA3-210ENST00000485424 LRRC59Q96AG4 307 aaKnown RBP19.87■□□□□ 0.77
UBA3-210ENST00000485424 FMN2Q9NZ56 1722 aa19.87■□□□□ 0.77
UBA3-210ENST00000485424 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
UBA3-210ENST00000485424 VGFO15240 615 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms