RNA–Protein interactions for RNA: ENST00000480327.1

VCP-206, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 884 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-206ENST00000480327 ZFYVE9O95405 1425 aa13.8□□□□□ -0.2
VCP-206ENST00000480327 RBM33Q96EV2 1170 aaKnown RBP13.79□□□□□ -0.2
VCP-206ENST00000480327 SLC26A8Q96RN1 970 aa13.79□□□□□ -0.2
VCP-206ENST00000480327 FAM135BQ49AJ0 1406 aa13.79□□□□□ -0.2
VCP-206ENST00000480327 RPRD2Q5VT52 1461 aaKnown RBP13.78□□□□□ -0.2
VCP-206ENST00000480327 KCNA6P17658 529 aa13.77□□□□□ -0.21
VCP-206ENST00000480327 NKTRP30414 1462 aaKnown RBP13.77□□□□□ -0.21
VCP-206ENST00000480327 PHF23Q9BUL5 403 aaPredicted RBP13.77□□□□□ -0.21
VCP-206ENST00000480327 ANKRD50Q9ULJ7 1429 aa13.77□□□□□ -0.21
VCP-206ENST00000480327 RRBP1Q9P2E9 1410 aaKnown RBP13.76□□□□□ -0.21
VCP-206ENST00000480327 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
VCP-206ENST00000480327 PHLPP1O60346 1717 aa13.75□□□□□ -0.21
VCP-206ENST00000480327 IQGAP3Q86VI3 1631 aa13.75□□□□□ -0.21
VCP-206ENST00000480327 PROSER2Q86WR7 435 aaPredicted RBP13.73□□□□□ -0.21
VCP-206ENST00000480327 SLC52A1Q9NWF4 448 aa13.73□□□□□ -0.21
VCP-206ENST00000480327 RIMS2Q9UQ26 1411 aa13.73□□□□□ -0.21
VCP-206ENST00000480327 PLEKHG1Q9ULL1 1385 aa13.72□□□□□ -0.21
VCP-206ENST00000480327 COL16A1Q07092 1604 aaPredicted RBP13.72□□□□□ -0.21
VCP-206ENST00000480327 SETD1AO15047 1707 aaKnown RBP13.71□□□□□ -0.21
VCP-206ENST00000480327 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.71□□□□□ -0.21
VCP-206ENST00000480327 ADAMTS13Q76LX8 1427 aa13.71□□□□□ -0.22
VCP-206ENST00000480327 NRXN3Q9Y4C0 1643 aa13.69□□□□□ -0.22
VCP-206ENST00000480327 POTEAQ6S8J7 498 aa13.69□□□□□ -0.22
VCP-206ENST00000480327 DIP2AQ14689 1571 aa13.67□□□□□ -0.22
VCP-206ENST00000480327 MSH6P52701 1360 aa13.67□□□□□ -0.22
VCP-206ENST00000480327 SPHKAPQ2M3C7 1700 aa13.67□□□□□ -0.22
VCP-206ENST00000480327 SLAIN2Q9P270 581 aa13.66□□□□□ -0.22
VCP-206ENST00000480327 ROCK1Q13464 1354 aa13.66□□□□□ -0.22
VCP-206ENST00000480327 PTPRUQ92729 1446 aa13.65□□□□□ -0.22
VCP-206ENST00000480327 XRN1Q8IZH2 1706 aaKnown RBP13.65□□□□□ -0.22
VCP-206ENST00000480327 NUTM2DQ5VT03 806 aaPredicted RBP13.65□□□□□ -0.22
VCP-206ENST00000480327 TBX22Q9Y458 520 aa13.65□□□□□ -0.22
VCP-206ENST00000480327 LRP6O75581 1613 aa13.64□□□□□ -0.23
VCP-206ENST00000480327 SHPRHQ149N8 1683 aa13.64□□□□□ -0.23
VCP-206ENST00000480327 BCANQ96GW7 911 aa13.64□□□□□ -0.23
VCP-206ENST00000480327 AHDC1Q5TGY3 1603 aaPredicted RBP13.64□□□□□ -0.23
VCP-206ENST00000480327 NCOA3Q9Y6Q9 1424 aa13.63□□□□□ -0.23
VCP-206ENST00000480327 PPP1R15AO75807 674 aaPredicted RBP13.62□□□□□ -0.23
VCP-206ENST00000480327 TRPM2O94759 1503 aa13.62□□□□□ -0.23
VCP-206ENST00000480327 CHGAP10645 457 aaKnown RBP13.61□□□□□ -0.23
VCP-206ENST00000480327 SETBP1Q9Y6X0 1596 aa13.61□□□□□ -0.23
VCP-206ENST00000480327 PIK3R4Q99570 1358 aa13.6□□□□□ -0.23
VCP-206ENST00000480327 JCADQ9P266 1359 aa13.6□□□□□ -0.23
VCP-206ENST00000480327 CLTCL1P53675 1640 aa13.6□□□□□ -0.23
VCP-206ENST00000480327 NUP155O75694 1391 aa13.59□□□□□ -0.23
VCP-206ENST00000480327 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.59□□□□□ -0.23
VCP-206ENST00000480327 NHSL1Q5SYE7 1610 aa13.59□□□□□ -0.23
VCP-206ENST00000480327 NALCNQ8IZF0 1738 aa13.59□□□□□ -0.23
VCP-206ENST00000480327 HDGFP51858 240 aaKnown RBP13.58□□□□□ -0.24
VCP-206ENST00000480327 NEXMIFQ5QGS0 1516 aa13.57□□□□□ -0.24
VCP-206ENST00000480327 KIF1BO60333 1816 aa13.57□□□□□ -0.24
VCP-206ENST00000480327 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
VCP-206ENST00000480327 NAIPQ13075 1403 aa13.56□□□□□ -0.24
VCP-206ENST00000480327 ASXL1Q8IXJ9 1541 aa13.55□□□□□ -0.24
VCP-206ENST00000480327 C19orf44Q9H6X5 657 aa13.55□□□□□ -0.24
VCP-206ENST00000480327 METP08581 1390 aa13.55□□□□□ -0.24
VCP-206ENST00000480327 TRIM26Q12899 539 aaPredicted RBP13.54□□□□□ -0.24
VCP-206ENST00000480327 BRINP3Q76B58 766 aa13.54□□□□□ -0.24
VCP-206ENST00000480327 HFM1A2PYH4 1435 aa13.54□□□□□ -0.24
VCP-206ENST00000480327 MST1RQ04912 1400 aa13.54□□□□□ -0.24
VCP-206ENST00000480327 C14orf37Q86TY3 774 aa13.53□□□□□ -0.24
VCP-206ENST00000480327 CADPS2Q86UW7 1296 aa13.53□□□□□ -0.24
VCP-206ENST00000480327 DCCP43146 1447 aa13.53□□□□□ -0.24
VCP-206ENST00000480327 SPATA31A6Q5VVP1 1343 aa13.52□□□□□ -0.25
VCP-206ENST00000480327 ATF3P18847 181 aa13.51□□□□□ -0.25
VCP-206ENST00000480327 PPLO60437 1756 aa13.5□□□□□ -0.25
VCP-206ENST00000480327 LAMC1P11047 1609 aa13.5□□□□□ -0.25
VCP-206ENST00000480327 TRIM52Q96A61 297 aa13.5□□□□□ -0.25
VCP-206ENST00000480327 SETD5Q9C0A6 1442 aa13.49□□□□□ -0.25
VCP-206ENST00000480327 ADGRL3Q9HAR2 1447 aa13.48□□□□□ -0.25
VCP-206ENST00000480327 DDX17Q92841 729 aaKnown RBP13.47□□□□□ -0.25
VCP-206ENST00000480327 ZNF326Q5BKZ1 582 aaKnown RBP13.46□□□□□ -0.25
VCP-206ENST00000480327 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
VCP-206ENST00000480327 NUTM2BA6NNL0 878 aaPredicted RBP13.44□□□□□ -0.26
VCP-206ENST00000480327 NUTM2EB1AL46 878 aaPredicted RBP13.44□□□□□ -0.26
VCP-206ENST00000480327 MEX3CQ5U5Q3 659 aaKnown RBP13.44□□□□□ -0.26
VCP-206ENST00000480327 ZNF772Q68DY9 489 aaPredicted RBP13.44□□□□□ -0.26
VCP-206ENST00000480327 NUTM2AQ8IVF1 878 aaPredicted RBP13.44□□□□□ -0.26
VCP-206ENST00000480327 UPF1Q92900 1129 aaKnown RBP eCLIP13.44□□□□□ -0.26
VCP-206ENST00000480327 PCGF6Q9BYE7 350 aa13.44□□□□□ -0.26
VCP-206ENST00000480327 IFT172Q9UG01 1749 aa13.44□□□□□ -0.26
VCP-206ENST00000480327 PNPLA6Q8IY17 1366 aa13.44□□□□□ -0.26
VCP-206ENST00000480327 C1orf167Q5SNV9 1468 aa13.43□□□□□ -0.26
VCP-206ENST00000480327 PTCH1Q13635 1447 aa13.43□□□□□ -0.26
VCP-206ENST00000480327 PRAG1Q86YV5 1406 aa13.43□□□□□ -0.26
VCP-206ENST00000480327 ROBO2Q9HCK4 1378 aa13.43□□□□□ -0.26
VCP-206ENST00000480327 CDK12Q9NYV4 1490 aaPredicted RBP13.42□□□□□ -0.26
VCP-206ENST00000480327 AFF2P51816 1311 aa13.41□□□□□ -0.26
VCP-206ENST00000480327 COL22A1Q8NFW1 1626 aaPredicted RBP13.41□□□□□ -0.26
VCP-206ENST00000480327 RGS12O14924 1447 aa13.4□□□□□ -0.26
VCP-206ENST00000480327 MARF1Q9Y4F3 1742 aaKnown RBP13.4□□□□□ -0.26
VCP-206ENST00000480327 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
VCP-206ENST00000480327 RXRBP28702 533 aa13.39□□□□□ -0.27
VCP-206ENST00000480327 LRRC59Q96AG4 307 aaKnown RBP13.39□□□□□ -0.27
VCP-206ENST00000480327 ORAI2Q96SN7 254 aa13.38□□□□□ -0.27
VCP-206ENST00000480327 FOXD1Q16676 465 aa13.37□□□□□ -0.27
VCP-206ENST00000480327 MPHOSPH9Q99550 1183 aa13.37□□□□□ -0.27
VCP-206ENST00000480327 SOS2Q07890 1332 aaPredicted RBP13.37□□□□□ -0.27
VCP-206ENST00000480327 CDC42BPGQ6DT37 1551 aa13.37□□□□□ -0.27
VCP-206ENST00000480327 EP400Q96L91 3159 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms