RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 KCNA6P17658 529 aa18.81■□□□□ 0.6
HDAC6-219ENST00000476625 PROSER2Q86WR7 435 aaPredicted RBP18.81■□□□□ 0.6
HDAC6-219ENST00000476625 TMEM131LA2VDJ0 1609 aa18.8■□□□□ 0.6
HDAC6-219ENST00000476625 ADGRL2O95490 1459 aa18.79■□□□□ 0.6
HDAC6-219ENST00000476625 E9PCH4 1651 aa18.78■□□□□ 0.6
HDAC6-219ENST00000476625 NKTRP30414 1462 aaKnown RBP18.77■□□□□ 0.6
HDAC6-219ENST00000476625 ZFYVE9O95405 1425 aa18.77■□□□□ 0.6
HDAC6-219ENST00000476625 BCANQ96GW7 911 aa18.77■□□□□ 0.6
HDAC6-219ENST00000476625 COL16A1Q07092 1604 aaPredicted RBP18.75■□□□□ 0.59
HDAC6-219ENST00000476625 APLP2Q06481 763 aa18.75■□□□□ 0.59
HDAC6-219ENST00000476625 FAM50AQ14320 339 aaKnown RBP18.75■□□□□ 0.59
HDAC6-219ENST00000476625 NUTM2DQ5VT03 806 aaPredicted RBP18.75■□□□□ 0.59
HDAC6-219ENST00000476625 UNC13BO14795 1591 aa18.75■□□□□ 0.59
HDAC6-219ENST00000476625 RIMS2Q9UQ26 1411 aa18.74■□□□□ 0.59
HDAC6-219ENST00000476625 ANKRD50Q9ULJ7 1429 aa18.73■□□□□ 0.59
HDAC6-219ENST00000476625 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.72■□□□□ 0.59
HDAC6-219ENST00000476625 LRP6O75581 1613 aa18.72■□□□□ 0.59
HDAC6-219ENST00000476625 MSH6P52701 1360 aa18.71■□□□□ 0.59
HDAC6-219ENST00000476625 PLEKHG1Q9ULL1 1385 aa18.7■□□□□ 0.58
HDAC6-219ENST00000476625 RPRD2Q5VT52 1461 aaKnown RBP18.7■□□□□ 0.58
HDAC6-219ENST00000476625 CHGAP10645 457 aaKnown RBP18.68■□□□□ 0.58
HDAC6-219ENST00000476625 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
HDAC6-219ENST00000476625 ADAMTS13Q76LX8 1427 aa18.67■□□□□ 0.58
HDAC6-219ENST00000476625 PPP1R15AO75807 674 aaPredicted RBP18.67■□□□□ 0.58
HDAC6-219ENST00000476625 SLC52A1Q9NWF4 448 aa18.67■□□□□ 0.58
HDAC6-219ENST00000476625 IQGAP3Q86VI3 1631 aa18.67■□□□□ 0.58
HDAC6-219ENST00000476625 NRXN3Q9Y4C0 1643 aa18.64■□□□□ 0.57
HDAC6-219ENST00000476625 JCADQ9P266 1359 aa18.64■□□□□ 0.57
HDAC6-219ENST00000476625 PTPRUQ92729 1446 aa18.64■□□□□ 0.57
HDAC6-219ENST00000476625 SHPRHQ149N8 1683 aa18.63■□□□□ 0.57
HDAC6-219ENST00000476625 AHDC1Q5TGY3 1603 aaPredicted RBP18.62■□□□□ 0.57
HDAC6-219ENST00000476625 DIP2AQ14689 1571 aa18.61■□□□□ 0.57
HDAC6-219ENST00000476625 C14orf37Q86TY3 774 aa18.61■□□□□ 0.57
HDAC6-219ENST00000476625 SPHKAPQ2M3C7 1700 aa18.59■□□□□ 0.57
HDAC6-219ENST00000476625 XRN1Q8IZH2 1706 aaKnown RBP18.59■□□□□ 0.57
HDAC6-219ENST00000476625 TBX22Q9Y458 520 aa18.58■□□□□ 0.56
HDAC6-219ENST00000476625 TRPM2O94759 1503 aa18.58■□□□□ 0.56
HDAC6-219ENST00000476625 ITGAEP38570 1179 aa18.57■□□□□ 0.56
HDAC6-219ENST00000476625 PPARGC1BQ86YN6 1023 aaKnown RBP18.56■□□□□ 0.56
HDAC6-219ENST00000476625 TRIM52Q96A61 297 aa18.56■□□□□ 0.56
HDAC6-219ENST00000476625 NHSL1Q5SYE7 1610 aa18.55■□□□□ 0.56
HDAC6-219ENST00000476625 NALCNQ8IZF0 1738 aa18.54■□□□□ 0.56
HDAC6-219ENST00000476625 MEX3CQ5U5Q3 659 aaKnown RBP18.54■□□□□ 0.56
HDAC6-219ENST00000476625 ASXL1Q8IXJ9 1541 aa18.54■□□□□ 0.56
HDAC6-219ENST00000476625 AMOTL2Q9Y2J4 779 aa18.53■□□□□ 0.56
HDAC6-219ENST00000476625 CLTCL1P53675 1640 aa18.52■□□□□ 0.56
HDAC6-219ENST00000476625 NUTM2BA6NNL0 878 aaPredicted RBP18.52■□□□□ 0.56
HDAC6-219ENST00000476625 NUTM2EB1AL46 878 aaPredicted RBP18.52■□□□□ 0.56
HDAC6-219ENST00000476625 BRINP3Q76B58 766 aa18.52■□□□□ 0.56
HDAC6-219ENST00000476625 NUTM2AQ8IVF1 878 aaPredicted RBP18.52■□□□□ 0.56
HDAC6-219ENST00000476625 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.52■□□□□ 0.56
HDAC6-219ENST00000476625 NUP155O75694 1391 aa18.52■□□□□ 0.55
HDAC6-219ENST00000476625 SETBP1Q9Y6X0 1596 aa18.51■□□□□ 0.55
HDAC6-219ENST00000476625 NCOA3Q9Y6Q9 1424 aa18.51■□□□□ 0.55
HDAC6-219ENST00000476625 ATF3P18847 181 aa18.51■□□□□ 0.55
HDAC6-219ENST00000476625 DDX17Q92841 729 aaKnown RBP18.51■□□□□ 0.55
HDAC6-219ENST00000476625 HDGFP51858 240 aaKnown RBP18.5■□□□□ 0.55
HDAC6-219ENST00000476625 C19orf44Q9H6X5 657 aa18.5■□□□□ 0.55
HDAC6-219ENST00000476625 SPATA31A6Q5VVP1 1343 aa18.49■□□□□ 0.55
HDAC6-219ENST00000476625 MST1RQ04912 1400 aa18.49■□□□□ 0.55
HDAC6-219ENST00000476625 CADPS2Q86UW7 1296 aa18.49■□□□□ 0.55
HDAC6-219ENST00000476625 METP08581 1390 aa18.49■□□□□ 0.55
HDAC6-219ENST00000476625 ROCK1Q13464 1354 aa18.49■□□□□ 0.55
HDAC6-219ENST00000476625 PIK3R4Q99570 1358 aa18.48■□□□□ 0.55
HDAC6-219ENST00000476625 UPF1Q92900 1129 aaKnown RBP eCLIP18.47■□□□□ 0.55
HDAC6-219ENST00000476625 NEXMIFQ5QGS0 1516 aa18.47■□□□□ 0.55
HDAC6-219ENST00000476625 KIF1BO60333 1816 aa18.44■□□□□ 0.54
HDAC6-219ENST00000476625 ZNF326Q5BKZ1 582 aaKnown RBP18.43■□□□□ 0.54
HDAC6-219ENST00000476625 ZNF772Q68DY9 489 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-219ENST00000476625 AFF2P51816 1311 aa18.43■□□□□ 0.54
HDAC6-219ENST00000476625 DCCP43146 1447 aa18.41■□□□□ 0.54
HDAC6-219ENST00000476625 SETD5Q9C0A6 1442 aa18.4■□□□□ 0.54
HDAC6-219ENST00000476625 RGS12O14924 1447 aa18.4■□□□□ 0.54
HDAC6-219ENST00000476625 ADGRL3Q9HAR2 1447 aa18.4■□□□□ 0.54
HDAC6-219ENST00000476625 RXRBP28702 533 aa18.39■□□□□ 0.53
HDAC6-219ENST00000476625 PNPLA6Q8IY17 1366 aa18.39■□□□□ 0.53
HDAC6-219ENST00000476625 C8orf37Q96NL8 207 aa18.38■□□□□ 0.53
HDAC6-219ENST00000476625 LAMC1P11047 1609 aa18.34■□□□□ 0.53
HDAC6-219ENST00000476625 C1orf167Q5SNV9 1468 aa18.34■□□□□ 0.53
HDAC6-219ENST00000476625 CDK12Q9NYV4 1490 aaPredicted RBP18.34■□□□□ 0.53
HDAC6-219ENST00000476625 PPLO60437 1756 aa18.34■□□□□ 0.53
HDAC6-219ENST00000476625 ADAMTS2O95450 1211 aa18.33■□□□□ 0.52
HDAC6-219ENST00000476625 ROBO2Q9HCK4 1378 aa18.32■□□□□ 0.52
HDAC6-219ENST00000476625 ORAI2Q96SN7 254 aa18.31■□□□□ 0.52
HDAC6-219ENST00000476625 LRRC59Q96AG4 307 aaKnown RBP18.3■□□□□ 0.52
HDAC6-219ENST00000476625 QTRT2Q9H974 415 aaKnown RBP18.3■□□□□ 0.52
HDAC6-219ENST00000476625 NAIPQ13075 1403 aa18.3■□□□□ 0.52
HDAC6-219ENST00000476625 COL22A1Q8NFW1 1626 aaPredicted RBP18.27■□□□□ 0.52
HDAC6-219ENST00000476625 MARF1Q9Y4F3 1742 aaKnown RBP18.27■□□□□ 0.52
HDAC6-219ENST00000476625 PTCH1Q13635 1447 aa18.26■□□□□ 0.51
HDAC6-219ENST00000476625 NGLY1Q96IV0 654 aa18.25■□□□□ 0.51
HDAC6-219ENST00000476625 RBM6P78332 1123 aaKnown RBP18.24■□□□□ 0.51
HDAC6-219ENST00000476625 FOXD1Q16676 465 aa18.23■□□□□ 0.51
HDAC6-219ENST00000476625 RRBP1Q9P2E9 1410 aaKnown RBP18.23■□□□□ 0.51
HDAC6-219ENST00000476625 SOS2Q07890 1332 aaPredicted RBP18.23■□□□□ 0.51
HDAC6-219ENST00000476625 XPCQ01831 940 aaPredicted RBP18.22■□□□□ 0.51
HDAC6-219ENST00000476625 IFT172Q9UG01 1749 aa18.22■□□□□ 0.51
HDAC6-219ENST00000476625 USP21Q9UK80 565 aa18.21■□□□□ 0.51
HDAC6-219ENST00000476625 CDC42BPGQ6DT37 1551 aa18.21■□□□□ 0.51
HDAC6-219ENST00000476625 PXDNQ92626 1479 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms