RNA–Protein interactions for RNA: ENST00000472807.1

CHEK2-223, Transcript of checkpoint kinase 2, human

TSL 2

Gene CHEK2, Length 514 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHEK2-223	ENST00000472807	RRBP1	Q9P2E9	1410 aa	Known RBP	13.58	□□□□□ -0.24
CHEK2-223	ENST00000472807	MYO5B	Q9ULV0	1848 aa		13.58	□□□□□ -0.24
CHEK2-223	ENST00000472807	TMEM131L	A2VDJ0	1609 aa		13.57	□□□□□ -0.24
CHEK2-223	ENST00000472807	ALK	Q9UM73	1620 aa		13.57	□□□□□ -0.24
CHEK2-223	ENST00000472807	ZFYVE9	O95405	1425 aa		13.56	□□□□□ -0.24
CHEK2-223	ENST00000472807	PPP1R15A	O75807	674 aa	Predicted RBP	13.56	□□□□□ -0.24
CHEK2-223	ENST00000472807	BCAN	Q96GW7	911 aa		13.56	□□□□□ -0.24
CHEK2-223	ENST00000472807	RIMS2	Q9UQ26	1411 aa		13.56	□□□□□ -0.24
CHEK2-223	ENST00000472807	HSPA1L	P34931	641 aa		13.55	□□□□□ -0.24
CHEK2-223	ENST00000472807	HDGF	P51858	240 aa	Known RBP	13.55	□□□□□ -0.24
CHEK2-223	ENST00000472807	SLC26A8	Q96RN1	970 aa		13.55	□□□□□ -0.24
CHEK2-223	ENST00000472807	PLEKHG1	Q9ULL1	1385 aa		13.55	□□□□□ -0.24
CHEK2-223	ENST00000472807	CHGA	P10645	457 aa	Known RBP	13.54	□□□□□ -0.24
CHEK2-223	ENST00000472807	XIRP1	Q702N8	1843 aa	Known RBP	13.54	□□□□□ -0.24
CHEK2-223	ENST00000472807	NKTR	P30414	1462 aa	Known RBP	13.54	□□□□□ -0.24
CHEK2-223	ENST00000472807	NWD1	Q149M9	1564 aa		13.54	□□□□□ -0.24
CHEK2-223	ENST00000472807	KCNA6	P17658	529 aa		13.53	□□□□□ -0.24
CHEK2-223	ENST00000472807	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
CHEK2-223	ENST00000472807	SPHKAP	Q2M3C7	1700 aa		13.52	□□□□□ -0.25
CHEK2-223	ENST00000472807	TMEM94	Q12767	1356 aa		13.51	□□□□□ -0.25
CHEK2-223	ENST00000472807	NAIP	Q13075	1403 aa		13.5	□□□□□ -0.25
CHEK2-223	ENST00000472807	DIP2A	Q14689	1571 aa		13.49	□□□□□ -0.25
CHEK2-223	ENST00000472807	PROSER2	Q86WR7	435 aa	Predicted RBP	13.49	□□□□□ -0.25
CHEK2-223	ENST00000472807	MED1	Q15648	1581 aa	Predicted RBP	13.49	□□□□□ -0.25
CHEK2-223	ENST00000472807	HFM1	A2PYH4	1435 aa		13.48	□□□□□ -0.25
CHEK2-223	ENST00000472807	ILDR2	Q71H61	639 aa		13.48	□□□□□ -0.25
CHEK2-223	ENST00000472807	CHD2	O14647	1828 aa	Known RBP	13.48	□□□□□ -0.25
CHEK2-223	ENST00000472807	TRPM2	O94759	1503 aa		13.46	□□□□□ -0.25
CHEK2-223	ENST00000472807	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.46	□□□□□ -0.25
CHEK2-223	ENST00000472807	TBX22	Q9Y458	520 aa		13.46	□□□□□ -0.25
CHEK2-223	ENST00000472807	MSH6	P52701	1360 aa		13.45	□□□□□ -0.26
CHEK2-223	ENST00000472807	ADAMTS13	Q76LX8	1427 aa		13.45	□□□□□ -0.26
CHEK2-223	ENST00000472807	CLTCL1	P53675	1640 aa		13.44	□□□□□ -0.26
CHEK2-223	ENST00000472807	ZNF326	Q5BKZ1	582 aa	Known RBP	13.44	□□□□□ -0.26
CHEK2-223	ENST00000472807	RBM33	Q96EV2	1170 aa	Known RBP	13.44	□□□□□ -0.26
CHEK2-223	ENST00000472807	FAM135B	Q49AJ0	1406 aa		13.44	□□□□□ -0.26
CHEK2-223	ENST00000472807	PIK3R4	Q99570	1358 aa		13.44	□□□□□ -0.26
CHEK2-223	ENST00000472807	TRIM52	Q96A61	297 aa		13.43	□□□□□ -0.26
CHEK2-223	ENST00000472807	ROBO1	Q9Y6N7	1651 aa		13.43	□□□□□ -0.26
CHEK2-223	ENST00000472807	SETBP1	Q9Y6X0	1596 aa		13.42	□□□□□ -0.26
CHEK2-223	ENST00000472807	KIF1B	O60333	1816 aa		13.42	□□□□□ -0.26
CHEK2-223	ENST00000472807	NCOA3	Q9Y6Q9	1424 aa		13.41	□□□□□ -0.26
CHEK2-223	ENST00000472807	SOCS7	O14512	581 aa		13.41	□□□□□ -0.26
CHEK2-223	ENST00000472807	C14orf37	Q86TY3	774 aa		13.41	□□□□□ -0.26
CHEK2-223	ENST00000472807	NRXN3	Q9Y4C0	1643 aa		13.4	□□□□□ -0.26
CHEK2-223	ENST00000472807	NEXMIF	Q5QGS0	1516 aa		13.39	□□□□□ -0.27
CHEK2-223	ENST00000472807	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.39	□□□□□ -0.27
CHEK2-223	ENST00000472807	SLAIN2	Q9P270	581 aa		13.38	□□□□□ -0.27
CHEK2-223	ENST00000472807	XRN1	Q8IZH2	1706 aa	Known RBP	13.37	□□□□□ -0.27
CHEK2-223	ENST00000472807	AMOTL2	Q9Y2J4	779 aa		13.37	□□□□□ -0.27
CHEK2-223	ENST00000472807	PTPRU	Q92729	1446 aa		13.37	□□□□□ -0.27
CHEK2-223	ENST00000472807	PHLPP1	O60346	1717 aa		13.36	□□□□□ -0.27
CHEK2-223	ENST00000472807	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.36	□□□□□ -0.27
CHEK2-223	ENST00000472807	ATF3	P18847	181 aa		13.35	□□□□□ -0.27
CHEK2-223	ENST00000472807	CADPS2	Q86UW7	1296 aa		13.35	□□□□□ -0.27
CHEK2-223	ENST00000472807	C19orf44	Q9H6X5	657 aa		13.35	□□□□□ -0.27
CHEK2-223	ENST00000472807	MET	P08581	1390 aa		13.34	□□□□□ -0.27
CHEK2-223	ENST00000472807	DCC	P43146	1447 aa		13.33	□□□□□ -0.28
CHEK2-223	ENST00000472807	RPGRIP1L	Q68CZ1	1315 aa		13.33	□□□□□ -0.28
CHEK2-223	ENST00000472807	VGF	O15240	615 aa	Predicted RBP	13.32	□□□□□ -0.28
CHEK2-223	ENST00000472807	CCDC144A	A2RUR9	1427 aa		13.31	□□□□□ -0.28
CHEK2-223	ENST00000472807	PPL	O60437	1756 aa		13.31	□□□□□ -0.28
CHEK2-223	ENST00000472807	COL16A1	Q07092	1604 aa	Predicted RBP	13.3	□□□□□ -0.28
CHEK2-223	ENST00000472807	ACIN1	Q9UKV3	1341 aa	Known RBP	13.3	□□□□□ -0.28
CHEK2-223	ENST00000472807	JCAD	Q9P266	1359 aa		13.3	□□□□□ -0.28
CHEK2-223	ENST00000472807	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.29	□□□□□ -0.28
CHEK2-223	ENST00000472807	SETD1A	O15047	1707 aa	Known RBP	13.29	□□□□□ -0.28
CHEK2-223	ENST00000472807	PTCH1	Q13635	1447 aa		13.29	□□□□□ -0.28
CHEK2-223	ENST00000472807	ADGRL3	Q9HAR2	1447 aa		13.29	□□□□□ -0.28
CHEK2-223	ENST00000472807	MPHOSPH9	Q99550	1183 aa		13.28	□□□□□ -0.28
CHEK2-223	ENST00000472807	NALCN	Q8IZF0	1738 aa		13.27	□□□□□ -0.28
CHEK2-223	ENST00000472807	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.27	□□□□□ -0.29
CHEK2-223	ENST00000472807	SETD5	Q9C0A6	1442 aa		13.27	□□□□□ -0.29
CHEK2-223	ENST00000472807	MST1R	Q04912	1400 aa		13.26	□□□□□ -0.29
CHEK2-223	ENST00000472807	BRINP3	Q76B58	766 aa		13.26	□□□□□ -0.29
CHEK2-223	ENST00000472807	ASXL1	Q8IXJ9	1541 aa		13.26	□□□□□ -0.29
CHEK2-223	ENST00000472807	SPATA31E1	Q6ZUB1	1445 aa		13.25	□□□□□ -0.29
CHEK2-223	ENST00000472807	PRAG1	Q86YV5	1406 aa		13.25	□□□□□ -0.29
CHEK2-223	ENST00000472807	SHPRH	Q149N8	1683 aa		13.24	□□□□□ -0.29
CHEK2-223	ENST00000472807	ANKRD30B	Q9BXX2	1392 aa		13.24	□□□□□ -0.29
CHEK2-223	ENST00000472807	IFT172	Q9UG01	1749 aa		13.24	□□□□□ -0.29
CHEK2-223	ENST00000472807	ROBO2	Q9HCK4	1378 aa		13.23	□□□□□ -0.29
CHEK2-223	ENST00000472807	SPATA31A6	Q5VVP1	1343 aa		13.23	□□□□□ -0.29
CHEK2-223	ENST00000472807	RGL3	Q3MIN7	710 aa		13.23	□□□□□ -0.29
CHEK2-223	ENST00000472807	RGS17	Q9UGC6	210 aa	Predicted RBP	13.23	□□□□□ -0.29
CHEK2-223	ENST00000472807	NHSL1	Q5SYE7	1610 aa		13.22	□□□□□ -0.29
CHEK2-223	ENST00000472807	RAB3GAP2	Q9H2M9	1393 aa		13.21	□□□□□ -0.29
CHEK2-223	ENST00000472807	ADGRF5	Q8IZF2	1346 aa		13.21	□□□□□ -0.29
CHEK2-223	ENST00000472807	MEX3C	Q5U5Q3	659 aa	Known RBP	13.21	□□□□□ -0.29
CHEK2-223	ENST00000472807	C1orf167	Q5SNV9	1468 aa		13.2	□□□□□ -0.3
CHEK2-223	ENST00000472807	PIK3C2G	O75747	1445 aa		13.2	□□□□□ -0.3
CHEK2-223	ENST00000472807	LRP6	O75581	1613 aa		13.2	□□□□□ -0.3
CHEK2-223	ENST00000472807	POTEA	Q6S8J7	498 aa		13.18	□□□□□ -0.3
CHEK2-223	ENST00000472807	TECPR2	O15040	1411 aa		13.18	□□□□□ -0.3
CHEK2-223	ENST00000472807	CDC42BPG	Q6DT37	1551 aa		13.18	□□□□□ -0.3
CHEK2-223	ENST00000472807	KNDC1	Q76NI1	1749 aa		13.17	□□□□□ -0.3
CHEK2-223	ENST00000472807	LRPPRC	P42704	1394 aa	Known RBP	13.17	□□□□□ -0.3
CHEK2-223	ENST00000472807	MYOM2	P54296	1465 aa		13.16	□□□□□ -0.3
CHEK2-223	ENST00000472807	LRRC59	Q96AG4	307 aa	Known RBP	13.16	□□□□□ -0.3
CHEK2-223	ENST00000472807	LAMC1	P11047	1609 aa		13.16	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms