RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 SEPT9Q9UHD8 586 aaPredicted RBP9.95□□□□□ -0.82
PRPF40A-208ENST00000472760 POTEB3A0JP26 581 aa9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 HDGFP51858 240 aaKnown RBP9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 SH3D19Q5HYK7 790 aa9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 POTEBQ6S5H4 581 aa9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 PLSCR2Q9NRY7 297 aa9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 ATP1B4Q9UN42 357 aaPredicted RBP9.94□□□□□ -0.82
PRPF40A-208ENST00000472760 TIMELESSQ9UNS1 1208 aa9.93□□□□□ -0.82
PRPF40A-208ENST00000472760 CD46P15529 392 aa9.92□□□□□ -0.82
PRPF40A-208ENST00000472760 DIXDC1Q155Q3 683 aa9.92□□□□□ -0.82
PRPF40A-208ENST00000472760 RSPH4AQ5TD94 716 aa9.92□□□□□ -0.82
PRPF40A-208ENST00000472760 C14orf37Q86TY3 774 aa9.92□□□□□ -0.82
PRPF40A-208ENST00000472760 NBPF3Q9H094 633 aa9.92□□□□□ -0.82
PRPF40A-208ENST00000472760 TK2O00142 265 aa9.91□□□□□ -0.82
PRPF40A-208ENST00000472760 SKIV2LQ15477 1246 aaKnown RBP9.91□□□□□ -0.82
PRPF40A-208ENST00000472760 FAM98CQ17RN3 349 aaKnown RBP9.91□□□□□ -0.82
PRPF40A-208ENST00000472760 SWT1Q5T5J6 900 aaKnown RBP9.91□□□□□ -0.82
PRPF40A-208ENST00000472760 RDH13Q8NBN7 331 aa9.91□□□□□ -0.82
PRPF40A-208ENST00000472760 SLC4A3P48751 1232 aa9.9□□□□□ -0.82
PRPF40A-208ENST00000472760 TBC1D2Q9BYX2 928 aa9.9□□□□□ -0.82
PRPF40A-208ENST00000472760 POLR3EQ9NVU0 708 aa9.9□□□□□ -0.82
PRPF40A-208ENST00000472760 LSM11P83369 360 aaKnown RBP eCLIP9.89□□□□□ -0.83
PRPF40A-208ENST00000472760 LAPTM4BQ86VI4 370 aa9.89□□□□□ -0.83
PRPF40A-208ENST00000472760 NUTM1Q86Y26 1132 aa9.89□□□□□ -0.83
PRPF40A-208ENST00000472760 MYSM1Q5VVJ2 828 aa9.88□□□□□ -0.83
PRPF40A-208ENST00000472760 PCDH10Q9P2E7 1040 aa9.88□□□□□ -0.83
PRPF40A-208ENST00000472760 ADGRD1Q6QNK2 874 aa9.87□□□□□ -0.83
PRPF40A-208ENST00000472760 MRPL50Q8N5N7 158 aaKnown RBP9.87□□□□□ -0.83
PRPF40A-208ENST00000472760 SPIRE2Q8WWL2 714 aa9.87□□□□□ -0.83
PRPF40A-208ENST00000472760 BHMG1C9JSJ3 638 aaPredicted RBP9.86□□□□□ -0.83
PRPF40A-208ENST00000472760 STAC3Q96MF2 364 aa9.86□□□□□ -0.83
PRPF40A-208ENST00000472760 CLK2P49760 499 aaKnown RBP9.85□□□□□ -0.83
PRPF40A-208ENST00000472760 ANKRD13DQ6ZTN6 518 aa9.85□□□□□ -0.83
PRPF40A-208ENST00000472760 SAMD7Q7Z3H4 446 aa9.85□□□□□ -0.83
PRPF40A-208ENST00000472760 SLF2Q8IX21 1173 aa9.85□□□□□ -0.83
PRPF40A-208ENST00000472760 PROCA1Q8NCQ7 364 aaPredicted RBP9.85□□□□□ -0.83
PRPF40A-208ENST00000472760 ZFRQ96KR1 1074 aaKnown RBP9.84□□□□□ -0.83
PRPF40A-208ENST00000472760 RNF40O75150 1001 aa9.83□□□□□ -0.84
PRPF40A-208ENST00000472760 KDM4AO75164 1064 aa9.83□□□□□ -0.84
PRPF40A-208ENST00000472760 RIC3Q7Z5B4 369 aa9.83□□□□□ -0.84
PRPF40A-208ENST00000472760 GOLGA8CPA6NN73 597 aa9.82□□□□□ -0.84
PRPF40A-208ENST00000472760 SLC10A3P09131 477 aa9.82□□□□□ -0.84
PRPF40A-208ENST00000472760 GCGRP47871 477 aa9.82□□□□□ -0.84
PRPF40A-208ENST00000472760 HRO43593 1189 aa9.8□□□□□ -0.84
PRPF40A-208ENST00000472760 USP46P62068 366 aa9.8□□□□□ -0.84
PRPF40A-208ENST00000472760 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.8□□□□□ -0.84
PRPF40A-208ENST00000472760 LIMD1Q9UGP4 676 aa9.8□□□□□ -0.84
PRPF40A-208ENST00000472760 MOXD2PA6NHM9 499 aa9.79□□□□□ -0.84
PRPF40A-208ENST00000472760 SPTLC1O15269 473 aa9.79□□□□□ -0.84
PRPF40A-208ENST00000472760 RSBN1LQ6PCB5 846 aaPredicted RBP9.79□□□□□ -0.84
PRPF40A-208ENST00000472760 LRCH3Q96II8 777 aa9.79□□□□□ -0.84
PRPF40A-208ENST00000472760 NDUFV2P19404 249 aa9.78□□□□□ -0.84
PRPF40A-208ENST00000472760 FLIIQ13045 1269 aa9.78□□□□□ -0.84
PRPF40A-208ENST00000472760 CSPP1Q1MSJ5 1256 aa9.78□□□□□ -0.84
PRPF40A-208ENST00000472760 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.78□□□□□ -0.84
PRPF40A-208ENST00000472760 CFHP08603 1231 aa9.77□□□□□ -0.85
PRPF40A-208ENST00000472760 ANKK1Q8NFD2 765 aa9.77□□□□□ -0.85
PRPF40A-208ENST00000472760 NECTIN2Q92692 538 aa9.77□□□□□ -0.85
PRPF40A-208ENST00000472760 GJA5P36382 358 aa9.76□□□□□ -0.85
PRPF40A-208ENST00000472760 TUSC1Q2TAM9 212 aa9.76□□□□□ -0.85
PRPF40A-208ENST00000472760 CDAN1Q8IWY9 1227 aa9.76□□□□□ -0.85
PRPF40A-208ENST00000472760 HOXA2O43364 376 aa9.75□□□□□ -0.85
PRPF40A-208ENST00000472760 KMT5BQ4FZB7 885 aa9.75□□□□□ -0.85
PRPF40A-208ENST00000472760 GRIPAP1Q4V328 841 aa9.75□□□□□ -0.85
PRPF40A-208ENST00000472760 FDX1P10109 184 aa9.74□□□□□ -0.85
PRPF40A-208ENST00000472760 PCDHB15Q9Y5E8 787 aa9.74□□□□□ -0.85
PRPF40A-208ENST00000472760 FUT2Q10981 343 aa9.73□□□□□ -0.85
PRPF40A-208ENST00000472760 NUTM2BA6NNL0 878 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 NUTM2EB1AL46 878 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 RFC5P40937 340 aa9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 PPP4CP60510 307 aa9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 NUTM2DQ5VT03 806 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 PPP2R2DQ66LE6 453 aa9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 NUTM2AQ8IVF1 878 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 WNT2BQ93097 391 aa9.72□□□□□ -0.85
PRPF40A-208ENST00000472760 SOWAHBA6NEL2 793 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 ATP6V1AP38606 617 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 GUCA2AQ02747 115 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 PRR14Q9BWN1 585 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 KRTAP3-3Q9BYR6 98 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 KRTAP3-2Q9BYR7 98 aa9.71□□□□□ -0.86
PRPF40A-208ENST00000472760 LILRB3O75022 631 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 BCAMP50895 628 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 QPCTQ16769 361 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 TMEM259Q4ZIN3 620 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 PRPF38BQ5VTL8 546 aaKnown RBP9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 HLA-CQ95604 372 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 ZMYND15Q9H091 742 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 ZBTB3Q9H5J0 574 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 HPS5Q9UPZ3 1129 aa9.7□□□□□ -0.86
PRPF40A-208ENST00000472760 ACTN4O43707 911 aaKnown RBP9.69□□□□□ -0.86
PRPF40A-208ENST00000472760 FBXO31Q5XUX0 539 aaPredicted RBP9.69□□□□□ -0.86
PRPF40A-208ENST00000472760 CABLES1Q8TDN4 633 aa9.69□□□□□ -0.86
PRPF40A-208ENST00000472760 TSR3Q9UJK0 312 aaKnown RBP9.69□□□□□ -0.86
PRPF40A-208ENST00000472760 BANK1Q8NDB2 785 aa9.68□□□□□ -0.86
PRPF40A-208ENST00000472760 PCDHGC3Q9UN70 934 aa9.68□□□□□ -0.86
PRPF40A-208ENST00000472760 HRCP23327 699 aa9.67□□□□□ -0.86
PRPF40A-208ENST00000472760 MCM6Q14566 821 aa9.67□□□□□ -0.86
PRPF40A-208ENST00000472760 RTL5Q5HYW3 569 aaPredicted RBP9.67□□□□□ -0.86
PRPF40A-208ENST00000472760 C6orf229H3BNL8 230 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms