RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
HMGN1-211ENST00000471260 SLC26A8Q96RN1 970 aa20.39■□□□□ 0.85
HMGN1-211ENST00000471260 PPP1R15AO75807 674 aaPredicted RBP20.38■□□□□ 0.85
HMGN1-211ENST00000471260 CHGAP10645 457 aaKnown RBP20.38■□□□□ 0.85
HMGN1-211ENST00000471260 BCANQ96GW7 911 aa20.37■□□□□ 0.85
HMGN1-211ENST00000471260 HFM1A2PYH4 1435 aa20.36■□□□□ 0.85
HMGN1-211ENST00000471260 MYO5BQ9ULV0 1848 aa20.36■□□□□ 0.85
HMGN1-211ENST00000471260 DISP3Q9P2K9 1392 aa20.35■□□□□ 0.85
HMGN1-211ENST00000471260 ALKQ9UM73 1620 aa20.35■□□□□ 0.85
HMGN1-211ENST00000471260 TBX22Q9Y458 520 aa20.34■□□□□ 0.85
HMGN1-211ENST00000471260 HSPA1LP34931 641 aa20.33■□□□□ 0.85
HMGN1-211ENST00000471260 NKTRP30414 1462 aaKnown RBP20.32■□□□□ 0.84
HMGN1-211ENST00000471260 SPHKAPQ2M3C7 1700 aa20.31■□□□□ 0.84
HMGN1-211ENST00000471260 NWD1Q149M9 1564 aa20.31■□□□□ 0.84
HMGN1-211ENST00000471260 PROSER2Q86WR7 435 aaPredicted RBP20.31■□□□□ 0.84
HMGN1-211ENST00000471260 TMEM94Q12767 1356 aa20.31■□□□□ 0.84
HMGN1-211ENST00000471260 XIRP1Q702N8 1843 aaKnown RBP20.29■□□□□ 0.84
HMGN1-211ENST00000471260 PIK3R4Q99570 1358 aa20.28■□□□□ 0.84
HMGN1-211ENST00000471260 DIP2AQ14689 1571 aa20.27■□□□□ 0.84
HMGN1-211ENST00000471260 TRIM52Q96A61 297 aa20.27■□□□□ 0.84
HMGN1-211ENST00000471260 CHD2O14647 1828 aaKnown RBP20.26■□□□□ 0.83
HMGN1-211ENST00000471260 ADAMTS13Q76LX8 1427 aa20.26■□□□□ 0.83
HMGN1-211ENST00000471260 NUTM2DQ5VT03 806 aaPredicted RBP20.25■□□□□ 0.83
HMGN1-211ENST00000471260 TRPM2O94759 1503 aa20.25■□□□□ 0.83
HMGN1-211ENST00000471260 NCOA3Q9Y6Q9 1424 aa20.25■□□□□ 0.83
HMGN1-211ENST00000471260 FAM135BQ49AJ0 1406 aa20.24■□□□□ 0.83
HMGN1-211ENST00000471260 ZNF326Q5BKZ1 582 aaKnown RBP20.23■□□□□ 0.83
HMGN1-211ENST00000471260 SLC4A1APQ9BWU0 796 aaKnown RBP20.23■□□□□ 0.83
HMGN1-211ENST00000471260 ACIN1Q9UKV3 1341 aaKnown RBP20.23■□□□□ 0.83
HMGN1-211ENST00000471260 MSH6P52701 1360 aa20.22■□□□□ 0.83
HMGN1-211ENST00000471260 SENP3Q9H4L4 574 aaPredicted RBP20.21■□□□□ 0.83
HMGN1-211ENST00000471260 CLTCL1P53675 1640 aa20.2■□□□□ 0.82
HMGN1-211ENST00000471260 RBM33Q96EV2 1170 aaKnown RBP20.19■□□□□ 0.82
HMGN1-211ENST00000471260 SETBP1Q9Y6X0 1596 aa20.18■□□□□ 0.82
HMGN1-211ENST00000471260 ILDR2Q71H61 639 aa20.17■□□□□ 0.82
HMGN1-211ENST00000471260 AMOTL2Q9Y2J4 779 aa20.17■□□□□ 0.82
HMGN1-211ENST00000471260 KIF1BO60333 1816 aa20.17■□□□□ 0.82
HMGN1-211ENST00000471260 RPGRIP1LQ68CZ1 1315 aa20.16■□□□□ 0.82
HMGN1-211ENST00000471260 VGFO15240 615 aaPredicted RBP20.15■□□□□ 0.82
HMGN1-211ENST00000471260 SLAIN2Q9P270 581 aa20.15■□□□□ 0.82
HMGN1-211ENST00000471260 NEXMIFQ5QGS0 1516 aa20.15■□□□□ 0.82
HMGN1-211ENST00000471260 C19orf44Q9H6X5 657 aa20.14■□□□□ 0.81
HMGN1-211ENST00000471260 NRXN3Q9Y4C0 1643 aa20.13■□□□□ 0.81
HMGN1-211ENST00000471260 MED1Q15648 1581 aaPredicted RBP20.12■□□□□ 0.81
HMGN1-211ENST00000471260 PTPRUQ92729 1446 aa20.12■□□□□ 0.81
HMGN1-211ENST00000471260 C14orf37Q86TY3 774 aa20.12■□□□□ 0.81
HMGN1-211ENST00000471260 CADPS2Q86UW7 1296 aa20.12■□□□□ 0.81
HMGN1-211ENST00000471260 MPHOSPH9Q99550 1183 aa20.11■□□□□ 0.81
HMGN1-211ENST00000471260 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
HMGN1-211ENST00000471260 ATF3P18847 181 aa20.09■□□□□ 0.81
HMGN1-211ENST00000471260 METP08581 1390 aa20.08■□□□□ 0.81
HMGN1-211ENST00000471260 SOCS7O14512 581 aa20.08■□□□□ 0.81
HMGN1-211ENST00000471260 SETD5Q9C0A6 1442 aa20.08■□□□□ 0.8
HMGN1-211ENST00000471260 CCDC144AA2RUR9 1427 aa20.07■□□□□ 0.8
HMGN1-211ENST00000471260 XRN1Q8IZH2 1706 aaKnown RBP20.07■□□□□ 0.8
HMGN1-211ENST00000471260 DCCP43146 1447 aa20.06■□□□□ 0.8
HMGN1-211ENST00000471260 FOXD1Q16676 465 aa20.06■□□□□ 0.8
HMGN1-211ENST00000471260 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.05■□□□□ 0.8
HMGN1-211ENST00000471260 PHF23Q9BUL5 403 aaPredicted RBP20.05■□□□□ 0.8
HMGN1-211ENST00000471260 PPLO60437 1756 aa20■□□□□ 0.79
HMGN1-211ENST00000471260 ANKRD30BQ9BXX2 1392 aa20■□□□□ 0.79
HMGN1-211ENST00000471260 SPATA31E1Q6ZUB1 1445 aa20■□□□□ 0.79
HMGN1-211ENST00000471260 PTCH1Q13635 1447 aa19.99■□□□□ 0.79
HMGN1-211ENST00000471260 PRAG1Q86YV5 1406 aa19.99■□□□□ 0.79
HMGN1-211ENST00000471260 JCADQ9P266 1359 aa19.98■□□□□ 0.79
HMGN1-211ENST00000471260 PHLPP1O60346 1717 aa19.98■□□□□ 0.79
HMGN1-211ENST00000471260 RAB3GAP2Q9H2M9 1393 aa19.97■□□□□ 0.79
HMGN1-211ENST00000471260 SETD1AO15047 1707 aaKnown RBP19.97■□□□□ 0.79
HMGN1-211ENST00000471260 ADGRL3Q9HAR2 1447 aa19.97■□□□□ 0.79
HMGN1-211ENST00000471260 HRCP23327 699 aa19.96■□□□□ 0.79
HMGN1-211ENST00000471260 RGL3Q3MIN7 710 aa19.96■□□□□ 0.79
HMGN1-211ENST00000471260 BRINP3Q76B58 766 aa19.95■□□□□ 0.78
HMGN1-211ENST00000471260 AHDC1Q5TGY3 1603 aaPredicted RBP19.94■□□□□ 0.78
HMGN1-211ENST00000471260 MST1RQ04912 1400 aa19.93■□□□□ 0.78
HMGN1-211ENST00000471260 COL16A1Q07092 1604 aaPredicted RBP19.93■□□□□ 0.78
HMGN1-211ENST00000471260 ADGRF5Q8IZF2 1346 aa19.93■□□□□ 0.78
HMGN1-211ENST00000471260 ROBO2Q9HCK4 1378 aa19.92■□□□□ 0.78
HMGN1-211ENST00000471260 SPATA31A6Q5VVP1 1343 aa19.91■□□□□ 0.78
HMGN1-211ENST00000471260 RGS17Q9UGC6 210 aaPredicted RBP19.9■□□□□ 0.78
HMGN1-211ENST00000471260 IFT172Q9UG01 1749 aa19.9■□□□□ 0.78
HMGN1-211ENST00000471260 ASXL1Q8IXJ9 1541 aa19.89■□□□□ 0.77
HMGN1-211ENST00000471260 NALCNQ8IZF0 1738 aa19.88■□□□□ 0.77
HMGN1-211ENST00000471260 PIK3C2GO75747 1445 aa19.88■□□□□ 0.77
HMGN1-211ENST00000471260 TECPR2O15040 1411 aa19.86■□□□□ 0.77
HMGN1-211ENST00000471260 LRPPRCP42704 1394 aaKnown RBP19.86■□□□□ 0.77
HMGN1-211ENST00000471260 ABCC11Q96J66 1382 aa19.86■□□□□ 0.77
HMGN1-211ENST00000471260 LRRC59Q96AG4 307 aaKnown RBP19.85■□□□□ 0.77
HMGN1-211ENST00000471260 C1orf167Q5SNV9 1468 aa19.85■□□□□ 0.77
HMGN1-211ENST00000471260 C14orf93Q9H972 538 aaKnown RBP19.84■□□□□ 0.77
HMGN1-211ENST00000471260 MYOM2P54296 1465 aa19.84■□□□□ 0.77
HMGN1-211ENST00000471260 SHPRHQ149N8 1683 aa19.84■□□□□ 0.77
HMGN1-211ENST00000471260 SIRT1Q96EB6 747 aa19.83■□□□□ 0.77
HMGN1-211ENST00000471260 NRXN1Q9ULB1 1477 aa19.83■□□□□ 0.76
HMGN1-211ENST00000471260 NHSL1Q5SYE7 1610 aa19.83■□□□□ 0.76
HMGN1-211ENST00000471260 STAC3Q96MF2 364 aa19.82■□□□□ 0.76
HMGN1-211ENST00000471260 TMEM132EQ6IEE7 984 aa19.8■□□□□ 0.76
HMGN1-211ENST00000471260 STK26Q9P289 416 aa19.8■□□□□ 0.76
HMGN1-211ENST00000471260 YTHDC2Q9H6S0 1430 aaKnown RBP19.79■□□□□ 0.76
HMGN1-211ENST00000471260 DHX57Q6P158 1386 aaKnown RBP19.79■□□□□ 0.76
HMGN1-211ENST00000471260 KNDC1Q76NI1 1749 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 196.9 ms