RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 CFTRP13569 1480 aa6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 HRO43593 1189 aa6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 BRPF1P55201 1214 aaPredicted RBP6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 PDE4DQ08499 809 aa6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 FAM161AQ3B820 660 aa6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 RABGEF1Q9UJ41 708 aa6.8□□□□□ -1.32
TMEM39A-204ENST00000468545 NEUROD2Q15784 382 aa6.79□□□□□ -1.32
TMEM39A-204ENST00000468545 STAC3Q96MF2 364 aa6.79□□□□□ -1.32
TMEM39A-204ENST00000468545 VPS9D1Q9Y2B5 631 aa6.79□□□□□ -1.32
TMEM39A-204ENST00000468545 NUDT18Q6ZVK8 323 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 TATDN2Q93075 761 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 PHOX2BQ99453 314 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 EYA1Q99502 592 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 KIAA1468Q9P260 1216 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 PNMA3Q9UL41 463 aa6.78□□□□□ -1.32
TMEM39A-204ENST00000468545 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.77□□□□□ -1.33
TMEM39A-204ENST00000468545 C3orf80F5H4A9 247 aa6.77□□□□□ -1.33
TMEM39A-204ENST00000468545 TTLL12Q14166 644 aaPredicted RBP6.77□□□□□ -1.33
TMEM39A-204ENST00000468545 PARP9Q8IXQ6 854 aa6.77□□□□□ -1.33
TMEM39A-204ENST00000468545 NBPF3Q9H094 633 aa6.77□□□□□ -1.33
TMEM39A-204ENST00000468545 PDS5BQ9NTI5 1447 aa6.76□□□□□ -1.33
TMEM39A-204ENST00000468545 CLCN1P35523 988 aa6.76□□□□□ -1.33
TMEM39A-204ENST00000468545 FANCD2Q9BXW9 1451 aa6.76□□□□□ -1.33
TMEM39A-204ENST00000468545 ABCC8Q09428 1581 aa6.76□□□□□ -1.33
TMEM39A-204ENST00000468545 LAMC3Q9Y6N6 1575 aa6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 RCCD1A6NED2 376 aa6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 DNAJB2P25686 324 aa6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 MDM2Q00987 491 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 KCTD12Q96CX2 325 aaKnown RBP6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 GPBP1L1Q9HC44 474 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 GPCPD1Q9NPB8 672 aa6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 HCSTQ9UBK5 93 aa6.75□□□□□ -1.33
TMEM39A-204ENST00000468545 ERCC6Q03468 1493 aa6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 BHMG1C9JSJ3 638 aaPredicted RBP6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 SMAPO00193 183 aa6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 FAM98CQ17RN3 349 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 GIGYF2Q6Y7W6 1299 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 LAPTM4BQ86VI4 370 aa6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 FAM9AQ8IZU1 332 aaPredicted RBP6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 TMUB1Q9BVT8 246 aa6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 KDM4CQ9H3R0 1056 aa6.74□□□□□ -1.33
TMEM39A-204ENST00000468545 TMEM134Q9H6X4 195 aa6.73□□□□□ -1.33
TMEM39A-204ENST00000468545 SEPT9Q9UHD8 586 aaPredicted RBP6.73□□□□□ -1.33
TMEM39A-204ENST00000468545 WRNQ14191 1432 aaPredicted RBP eCLIP6.73□□□□□ -1.33
TMEM39A-204ENST00000468545 MRPL50Q8N5N7 158 aaKnown RBP6.72□□□□□ -1.33
TMEM39A-204ENST00000468545 NLRP7Q8WX94 980 aa6.72□□□□□ -1.33
TMEM39A-204ENST00000468545 REPIN1Q9BWE0 567 aaKnown RBP6.72□□□□□ -1.33
TMEM39A-204ENST00000468545 CEP164Q9UPV0 1460 aa6.72□□□□□ -1.33
TMEM39A-204ENST00000468545 DAXXQ9UER7 740 aaPredicted RBP6.71□□□□□ -1.34
TMEM39A-204ENST00000468545 GOLGA8CPA6NN73 597 aa6.7□□□□□ -1.34
TMEM39A-204ENST00000468545 FAM217BQ9NTX9 383 aaPredicted RBP6.7□□□□□ -1.34
TMEM39A-204ENST00000468545 KIF21AQ7Z4S6 1674 aa6.7□□□□□ -1.34
TMEM39A-204ENST00000468545 MS4A1P11836 297 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 PTPN5P54829 565 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 SULF1Q8IWU6 871 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 DDRGK1Q96HY6 314 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 ZFRQ96KR1 1074 aaKnown RBP6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 PLA2G2EQ9NZK7 142 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 PRDM2Q13029 1718 aa6.69□□□□□ -1.34
TMEM39A-204ENST00000468545 CUX1P39880 1505 aa6.68□□□□□ -1.34
TMEM39A-204ENST00000468545 SSTR3P32745 418 aaPredicted RBP6.68□□□□□ -1.34
TMEM39A-204ENST00000468545 HDGFP51858 240 aaKnown RBP6.68□□□□□ -1.34
TMEM39A-204ENST00000468545 SWT1Q5T5J6 900 aaKnown RBP6.68□□□□□ -1.34
TMEM39A-204ENST00000468545 SYNJ1O43426 1573 aa6.68□□□□□ -1.34
TMEM39A-204ENST00000468545 SLC4A3P48751 1232 aa6.67□□□□□ -1.34
TMEM39A-204ENST00000468545 TMEM132AQ24JP5 1023 aa6.67□□□□□ -1.34
TMEM39A-204ENST00000468545 SAMD7Q7Z3H4 446 aa6.67□□□□□ -1.34
TMEM39A-204ENST00000468545 WNT2BQ93097 391 aa6.67□□□□□ -1.34
TMEM39A-204ENST00000468545 FAM117AQ9C073 453 aa6.67□□□□□ -1.34
TMEM39A-204ENST00000468545 MRC2Q9UBG0 1479 aa6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 URB2Q14146 1524 aaKnown RBP6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 DDX11L8A8MPP1 907 aa6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 THSD4Q6ZMP0 1018 aa6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 SLF2Q8IX21 1173 aa6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 TOPBP1Q92547 1522 aa6.66□□□□□ -1.34
TMEM39A-204ENST00000468545 CD46P15529 392 aa6.65□□□□□ -1.34
TMEM39A-204ENST00000468545 RSPH4AQ5TD94 716 aa6.65□□□□□ -1.34
TMEM39A-204ENST00000468545 ANKK1Q8NFD2 765 aa6.65□□□□□ -1.34
TMEM39A-204ENST00000468545 LRCH3Q96II8 777 aa6.65□□□□□ -1.34
TMEM39A-204ENST00000468545 PLEKHG3A1L390 1219 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 RDH13Q8NBN7 331 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 IL27Q8NEV9 243 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 NECTIN2Q92692 538 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 BEGAINQ9BUH8 593 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 SOGA1O94964 1423 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 FGD5Q6ZNL6 1462 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 RAD54L2Q9Y4B4 1467 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 DNMBPQ6XZF7 1577 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 TOP2BQ02880 1626 aa6.64□□□□□ -1.35
TMEM39A-204ENST00000468545 RNF40O75150 1001 aa6.63□□□□□ -1.35
TMEM39A-204ENST00000468545 BIVM-ERCC5R4GMW8 1640 aa6.62□□□□□ -1.35
TMEM39A-204ENST00000468545 RUSC2Q8N2Y8 1516 aa6.62□□□□□ -1.35
TMEM39A-204ENST00000468545 LOC105371045A0A1W2PR82 267 aa6.62□□□□□ -1.35
TMEM39A-204ENST00000468545 SOWAHBA6NEL2 793 aa6.62□□□□□ -1.35
TMEM39A-204ENST00000468545 SLC10A3P09131 477 aa6.62□□□□□ -1.35
TMEM39A-204ENST00000468545 POLA1P09884 1462 aaPredicted RBP6.61□□□□□ -1.35
TMEM39A-204ENST00000468545 DIXDC1Q155Q3 683 aa6.61□□□□□ -1.35
TMEM39A-204ENST00000468545 TDRD9Q8NDG6 1382 aaKnown RBP6.6□□□□□ -1.35
TMEM39A-204ENST00000468545 CFHP08603 1231 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms