RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 SENP3Q9H4L4 574 aaPredicted RBP32.89■■■□□ 2.86
LIME1-203ENST00000465591 XIRP1Q702N8 1843 aaKnown RBP32.88■■■□□ 2.85
LIME1-203ENST00000465591 PLEKHG1Q9ULL1 1385 aa32.83■■■□□ 2.85
LIME1-203ENST00000465591 NUTM2DQ5VT03 806 aaPredicted RBP32.82■■■□□ 2.84
LIME1-203ENST00000465591 TRIM52Q96A61 297 aa32.82■■■□□ 2.84
LIME1-203ENST00000465591 CLTCL1P53675 1640 aa32.81■■■□□ 2.84
LIME1-203ENST00000465591 TOM1O60784 492 aa32.8■■■□□ 2.84
LIME1-203ENST00000465591 PPP1R15AO75807 674 aaPredicted RBP32.8■■■□□ 2.84
LIME1-203ENST00000465591 BCANQ96GW7 911 aa32.8■■■□□ 2.84
LIME1-203ENST00000465591 TRPM2O94759 1503 aa32.79■■■□□ 2.84
LIME1-203ENST00000465591 PIP4K2BP78356 416 aa32.79■■■□□ 2.84
LIME1-203ENST00000465591 KCNA6P17658 529 aa32.78■■■□□ 2.84
LIME1-203ENST00000465591 NWD1Q149M9 1564 aa32.77■■■□□ 2.84
LIME1-203ENST00000465591 SCAF1Q9H7N4 1312 aaKnown RBP32.77■■■□□ 2.84
LIME1-203ENST00000465591 HDGFP51858 240 aaKnown RBP32.76■■■□□ 2.83
LIME1-203ENST00000465591 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.76■■■□□ 2.83
LIME1-203ENST00000465591 ADAMTS13Q76LX8 1427 aa32.74■■■□□ 2.83
LIME1-203ENST00000465591 CHD2O14647 1828 aaKnown RBP32.74■■■□□ 2.83
LIME1-203ENST00000465591 SLC4A1APQ9BWU0 796 aaKnown RBP32.71■■■□□ 2.83
LIME1-203ENST00000465591 TMEM94Q12767 1356 aa32.7■■■□□ 2.83
LIME1-203ENST00000465591 RBM33Q96EV2 1170 aaKnown RBP32.69■■■□□ 2.82
LIME1-203ENST00000465591 KIF1BO60333 1816 aa32.69■■■□□ 2.82
LIME1-203ENST00000465591 NKTRP30414 1462 aaKnown RBP32.68■■■□□ 2.82
LIME1-203ENST00000465591 TBX22Q9Y458 520 aa32.68■■■□□ 2.82
LIME1-203ENST00000465591 HSPA1LP34931 641 aa32.67■■■□□ 2.82
LIME1-203ENST00000465591 PROSER2Q86WR7 435 aaPredicted RBP32.66■■■□□ 2.82
LIME1-203ENST00000465591 NRXN3Q9Y4C0 1643 aa32.66■■■□□ 2.82
LIME1-203ENST00000465591 DIP2AQ14689 1571 aa32.65■■■□□ 2.82
LIME1-203ENST00000465591 FOXD1Q16676 465 aa32.64■■■□□ 2.82
LIME1-203ENST00000465591 ZNF326Q5BKZ1 582 aaKnown RBP32.64■■■□□ 2.82
LIME1-203ENST00000465591 NEXMIFQ5QGS0 1516 aa32.64■■■□□ 2.82
LIME1-203ENST00000465591 SETBP1Q9Y6X0 1596 aa32.59■■■□□ 2.81
LIME1-203ENST00000465591 SETD5Q9C0A6 1442 aa32.57■■■□□ 2.8
LIME1-203ENST00000465591 MPHOSPH9Q99550 1183 aa32.56■■■□□ 2.8
LIME1-203ENST00000465591 PTPRUQ92729 1446 aa32.56■■■□□ 2.8
LIME1-203ENST00000465591 PIK3R4Q99570 1358 aa32.55■■■□□ 2.8
LIME1-203ENST00000465591 DISP3Q9P2K9 1392 aa32.54■■■□□ 2.8
LIME1-203ENST00000465591 XRN1Q8IZH2 1706 aaKnown RBP32.48■■■□□ 2.79
LIME1-203ENST00000465591 PPLO60437 1756 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 METP08581 1390 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 RAB3GAP2Q9H2M9 1393 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 AMOTL2Q9Y2J4 779 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 MSH6P52701 1360 aa32.46■■■□□ 2.79
LIME1-203ENST00000465591 FAM135BQ49AJ0 1406 aa32.44■■■□□ 2.78
LIME1-203ENST00000465591 ROBO1Q9Y6N7 1651 aa32.43■■■□□ 2.78
LIME1-203ENST00000465591 SETD1AO15047 1707 aaKnown RBP32.43■■■□□ 2.78
LIME1-203ENST00000465591 CCDC144AA2RUR9 1427 aa32.43■■■□□ 2.78
LIME1-203ENST00000465591 NCOA3Q9Y6Q9 1424 aa32.42■■■□□ 2.78
LIME1-203ENST00000465591 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.4■■■□□ 2.78
LIME1-203ENST00000465591 RPGRIP1LQ68CZ1 1315 aa32.4■■■□□ 2.78
LIME1-203ENST00000465591 SPATA31E1Q6ZUB1 1445 aa32.39■■■□□ 2.78
LIME1-203ENST00000465591 VGFO15240 615 aaPredicted RBP32.38■■■□□ 2.77
LIME1-203ENST00000465591 MED1Q15648 1581 aaPredicted RBP32.37■■■□□ 2.77
LIME1-203ENST00000465591 ILDR2Q71H61 639 aa32.36■■■□□ 2.77
LIME1-203ENST00000465591 IFT172Q9UG01 1749 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 ACIN1Q9UKV3 1341 aaKnown RBP32.35■■■□□ 2.77
LIME1-203ENST00000465591 C14orf37Q86TY3 774 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 SLAIN2Q9P270 581 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 RGL3Q3MIN7 710 aa32.33■■■□□ 2.77
LIME1-203ENST00000465591 C19orf44Q9H6X5 657 aa32.31■■■□□ 2.76
LIME1-203ENST00000465591 ADGRF5Q8IZF2 1346 aa32.29■■■□□ 2.76
LIME1-203ENST00000465591 CADPS2Q86UW7 1296 aa32.25■■■□□ 2.75
LIME1-203ENST00000465591 NALCNQ8IZF0 1738 aa32.24■■■□□ 2.75
LIME1-203ENST00000465591 ATF3P18847 181 aa32.24■■■□□ 2.75
LIME1-203ENST00000465591 PHLPP1O60346 1717 aa32.23■■■□□ 2.75
LIME1-203ENST00000465591 ANKRD30BQ9BXX2 1392 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 ROBO2Q9HCK4 1378 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 DCCP43146 1447 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 PTCH1Q13635 1447 aa32.2■■■□□ 2.75
LIME1-203ENST00000465591 ADGRL3Q9HAR2 1447 aa32.2■■■□□ 2.75
LIME1-203ENST00000465591 PRAG1Q86YV5 1406 aa32.18■■■□□ 2.74
LIME1-203ENST00000465591 HRCP23327 699 aa32.18■■■□□ 2.74
LIME1-203ENST00000465591 ASXL1Q8IXJ9 1541 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 COL16A1Q07092 1604 aaPredicted RBP32.16■■■□□ 2.74
LIME1-203ENST00000465591 PIK3C2GO75747 1445 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 MST1RQ04912 1400 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 BRINP3Q76B58 766 aa32.12■■■□□ 2.73
LIME1-203ENST00000465591 AHDC1Q5TGY3 1603 aaPredicted RBP32.11■■■□□ 2.73
LIME1-203ENST00000465591 NRXN1Q9ULB1 1477 aa32.1■■■□□ 2.73
LIME1-203ENST00000465591 TMEM132EQ6IEE7 984 aa32.08■■■□□ 2.73
LIME1-203ENST00000465591 MYOM2P54296 1465 aa32.08■■■□□ 2.73
LIME1-203ENST00000465591 PHF23Q9BUL5 403 aaPredicted RBP32.05■■■□□ 2.72
LIME1-203ENST00000465591 LRPPRCP42704 1394 aaKnown RBP32.05■■■□□ 2.72
LIME1-203ENST00000465591 KNDC1Q76NI1 1749 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 TECPR2O15040 1411 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 STK26Q9P289 416 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 JCADQ9P266 1359 aa32.03■■■□□ 2.72
LIME1-203ENST00000465591 NHSL1Q5SYE7 1610 aa32.02■■■□□ 2.72
LIME1-203ENST00000465591 C14orf93Q9H972 538 aaKnown RBP32.01■■■□□ 2.71
LIME1-203ENST00000465591 C1orf167Q5SNV9 1468 aa32■■■□□ 2.71
LIME1-203ENST00000465591 CFAP70Q5T0N1 1121 aa32■■■□□ 2.71
LIME1-203ENST00000465591 ABCC11Q96J66 1382 aa31.99■■■□□ 2.71
LIME1-203ENST00000465591 WAPLQ7Z5K2 1190 aa31.99■■■□□ 2.71
LIME1-203ENST00000465591 RGS17Q9UGC6 210 aaPredicted RBP31.99■■■□□ 2.71
LIME1-203ENST00000465591 YTHDC2Q9H6S0 1430 aaKnown RBP31.99■■■□□ 2.71
LIME1-203ENST00000465591 PLEKHH1Q9ULM0 1364 aa31.98■■■□□ 2.71
LIME1-203ENST00000465591 LAMC1P11047 1609 aa31.98■■■□□ 2.71
LIME1-203ENST00000465591 DDX17Q92841 729 aaKnown RBP31.97■■■□□ 2.71
LIME1-203ENST00000465591 SOCS7O14512 581 aa31.96■■■□□ 2.71
LIME1-203ENST00000465591 SHPRHQ149N8 1683 aa31.95■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms