RNA–Protein interactions for RNA: ENST00000460264.5

COL5A1-203, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 913 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-203ENST00000460264 TOM1O60784 492 aa28.57■■■□□ 2.16
COL5A1-203ENST00000460264 CHGAP10645 457 aaKnown RBP28.57■■■□□ 2.16
COL5A1-203ENST00000460264 SLC26A8Q96RN1 970 aa28.57■■■□□ 2.16
COL5A1-203ENST00000460264 NWD1Q149M9 1564 aa28.57■■■□□ 2.16
COL5A1-203ENST00000460264 TRPM2O94759 1503 aa28.55■■■□□ 2.16
COL5A1-203ENST00000460264 PPP1R15AO75807 674 aaPredicted RBP28.54■■■□□ 2.16
COL5A1-203ENST00000460264 CLTCL1P53675 1640 aa28.54■■■□□ 2.16
COL5A1-203ENST00000460264 HDGFP51858 240 aaKnown RBP28.53■■■□□ 2.16
COL5A1-203ENST00000460264 PIP4K2BP78356 416 aa28.52■■■□□ 2.16
COL5A1-203ENST00000460264 SCAF1Q9H7N4 1312 aaKnown RBP28.51■■■□□ 2.15
COL5A1-203ENST00000460264 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.51■■■□□ 2.15
COL5A1-203ENST00000460264 CHD2O14647 1828 aaKnown RBP28.5■■■□□ 2.15
COL5A1-203ENST00000460264 KCNA6P17658 529 aa28.5■■■□□ 2.15
COL5A1-203ENST00000460264 BCANQ96GW7 911 aa28.5■■■□□ 2.15
COL5A1-203ENST00000460264 NKTRP30414 1462 aaKnown RBP28.5■■■□□ 2.15
COL5A1-203ENST00000460264 SENP3Q9H4L4 574 aaPredicted RBP28.49■■■□□ 2.15
COL5A1-203ENST00000460264 TRIM52Q96A61 297 aa28.48■■■□□ 2.15
COL5A1-203ENST00000460264 DIP2AQ14689 1571 aa28.48■■■□□ 2.15
COL5A1-203ENST00000460264 KIF1BO60333 1816 aa28.47■■■□□ 2.15
COL5A1-203ENST00000460264 ADAMTS13Q76LX8 1427 aa28.45■■■□□ 2.15
COL5A1-203ENST00000460264 NUTM2DQ5VT03 806 aaPredicted RBP28.45■■■□□ 2.14
COL5A1-203ENST00000460264 TMEM94Q12767 1356 aa28.44■■■□□ 2.14
COL5A1-203ENST00000460264 NRXN3Q9Y4C0 1643 aa28.41■■■□□ 2.14
COL5A1-203ENST00000460264 TBX22Q9Y458 520 aa28.41■■■□□ 2.14
COL5A1-203ENST00000460264 HSPA1LP34931 641 aa28.4■■■□□ 2.14
COL5A1-203ENST00000460264 SLC4A1APQ9BWU0 796 aaKnown RBP28.4■■■□□ 2.14
COL5A1-203ENST00000460264 NEXMIFQ5QGS0 1516 aa28.39■■■□□ 2.14
COL5A1-203ENST00000460264 PROSER2Q86WR7 435 aaPredicted RBP28.39■■■□□ 2.14
COL5A1-203ENST00000460264 SETBP1Q9Y6X0 1596 aa28.39■■■□□ 2.14
COL5A1-203ENST00000460264 ZNF326Q5BKZ1 582 aaKnown RBP28.36■■■□□ 2.13
COL5A1-203ENST00000460264 PIK3R4Q99570 1358 aa28.36■■■□□ 2.13
COL5A1-203ENST00000460264 DISP3Q9P2K9 1392 aa28.35■■■□□ 2.13
COL5A1-203ENST00000460264 RBM33Q96EV2 1170 aaKnown RBP28.34■■■□□ 2.13
COL5A1-203ENST00000460264 XRN1Q8IZH2 1706 aaKnown RBP28.3■■■□□ 2.12
COL5A1-203ENST00000460264 MSH6P52701 1360 aa28.28■■■□□ 2.12
COL5A1-203ENST00000460264 PTPRUQ92729 1446 aa28.27■■■□□ 2.12
COL5A1-203ENST00000460264 SETD5Q9C0A6 1442 aa28.27■■■□□ 2.12
COL5A1-203ENST00000460264 PPLO60437 1756 aa28.27■■■□□ 2.12
COL5A1-203ENST00000460264 FOXD1Q16676 465 aa28.27■■■□□ 2.12
COL5A1-203ENST00000460264 ROBO1Q9Y6N7 1651 aa28.26■■■□□ 2.12
COL5A1-203ENST00000460264 FAM135BQ49AJ0 1406 aa28.26■■■□□ 2.11
COL5A1-203ENST00000460264 NCOA3Q9Y6Q9 1424 aa28.26■■■□□ 2.11
COL5A1-203ENST00000460264 MPHOSPH9Q99550 1183 aa28.24■■■□□ 2.11
COL5A1-203ENST00000460264 MED1Q15648 1581 aaPredicted RBP28.24■■■□□ 2.11
COL5A1-203ENST00000460264 SETD1AO15047 1707 aaKnown RBP28.23■■■□□ 2.11
COL5A1-203ENST00000460264 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.22■■■□□ 2.11
COL5A1-203ENST00000460264 CCDC144AA2RUR9 1427 aa28.21■■■□□ 2.11
COL5A1-203ENST00000460264 METP08581 1390 aa28.21■■■□□ 2.11
COL5A1-203ENST00000460264 ACIN1Q9UKV3 1341 aaKnown RBP28.2■■■□□ 2.11
COL5A1-203ENST00000460264 AMOTL2Q9Y2J4 779 aa28.2■■■□□ 2.1
COL5A1-203ENST00000460264 RPGRIP1LQ68CZ1 1315 aa28.18■■■□□ 2.1
COL5A1-203ENST00000460264 RAB3GAP2Q9H2M9 1393 aa28.18■■■□□ 2.1
COL5A1-203ENST00000460264 IFT172Q9UG01 1749 aa28.17■■■□□ 2.1
COL5A1-203ENST00000460264 VGFO15240 615 aaPredicted RBP28.15■■■□□ 2.1
COL5A1-203ENST00000460264 C14orf37Q86TY3 774 aa28.15■■■□□ 2.1
COL5A1-203ENST00000460264 SPATA31E1Q6ZUB1 1445 aa28.15■■■□□ 2.1
COL5A1-203ENST00000460264 SLAIN2Q9P270 581 aa28.13■■■□□ 2.09
COL5A1-203ENST00000460264 ILDR2Q71H61 639 aa28.12■■■□□ 2.09
COL5A1-203ENST00000460264 C19orf44Q9H6X5 657 aa28.1■■■□□ 2.09
COL5A1-203ENST00000460264 PHLPP1O60346 1717 aa28.09■■■□□ 2.09
COL5A1-203ENST00000460264 NALCNQ8IZF0 1738 aa28.09■■■□□ 2.09
COL5A1-203ENST00000460264 DCCP43146 1447 aa28.09■■■□□ 2.09
COL5A1-203ENST00000460264 CADPS2Q86UW7 1296 aa28.07■■■□□ 2.08
COL5A1-203ENST00000460264 ATF3P18847 181 aa28.06■■■□□ 2.08
COL5A1-203ENST00000460264 PTCH1Q13635 1447 aa28.05■■■□□ 2.08
COL5A1-203ENST00000460264 PRAG1Q86YV5 1406 aa28.05■■■□□ 2.08
COL5A1-203ENST00000460264 ADGRL3Q9HAR2 1447 aa28.04■■■□□ 2.08
COL5A1-203ENST00000460264 ANKRD30BQ9BXX2 1392 aa28.03■■■□□ 2.08
COL5A1-203ENST00000460264 RGL3Q3MIN7 710 aa28.03■■■□□ 2.08
COL5A1-203ENST00000460264 COL16A1Q07092 1604 aaPredicted RBP28.02■■■□□ 2.08
COL5A1-203ENST00000460264 ADGRF5Q8IZF2 1346 aa28.01■■■□□ 2.07
COL5A1-203ENST00000460264 AHDC1Q5TGY3 1603 aaPredicted RBP28■■■□□ 2.07
COL5A1-203ENST00000460264 ROBO2Q9HCK4 1378 aa27.99■■■□□ 2.07
COL5A1-203ENST00000460264 MST1RQ04912 1400 aa27.98■■■□□ 2.07
COL5A1-203ENST00000460264 PIK3C2GO75747 1445 aa27.97■■■□□ 2.07
COL5A1-203ENST00000460264 HRCP23327 699 aa27.95■■■□□ 2.06
COL5A1-203ENST00000460264 ASXL1Q8IXJ9 1541 aa27.95■■■□□ 2.06
COL5A1-203ENST00000460264 MYOM2P54296 1465 aa27.93■■■□□ 2.06
COL5A1-203ENST00000460264 KNDC1Q76NI1 1749 aa27.92■■■□□ 2.06
COL5A1-203ENST00000460264 BRINP3Q76B58 766 aa27.92■■■□□ 2.06
COL5A1-203ENST00000460264 PHF23Q9BUL5 403 aaPredicted RBP27.92■■■□□ 2.06
COL5A1-203ENST00000460264 NRXN1Q9ULB1 1477 aa27.91■■■□□ 2.06
COL5A1-203ENST00000460264 NHSL1Q5SYE7 1610 aa27.91■■■□□ 2.06
COL5A1-203ENST00000460264 LAMC1P11047 1609 aa27.9■■■□□ 2.06
COL5A1-203ENST00000460264 JCADQ9P266 1359 aa27.89■■■□□ 2.06
COL5A1-203ENST00000460264 TECPR2O15040 1411 aa27.89■■■□□ 2.06
COL5A1-203ENST00000460264 SHPRHQ149N8 1683 aa27.87■■■□□ 2.05
COL5A1-203ENST00000460264 LRPPRCP42704 1394 aaKnown RBP27.86■■■□□ 2.05
COL5A1-203ENST00000460264 SOCS7O14512 581 aa27.86■■■□□ 2.05
COL5A1-203ENST00000460264 CDC42BPGQ6DT37 1551 aa27.85■■■□□ 2.05
COL5A1-203ENST00000460264 C1orf167Q5SNV9 1468 aa27.84■■■□□ 2.05
COL5A1-203ENST00000460264 TMEM132EQ6IEE7 984 aa27.81■■■□□ 2.04
COL5A1-203ENST00000460264 STK26Q9P289 416 aa27.81■■■□□ 2.04
COL5A1-203ENST00000460264 ABCC11Q96J66 1382 aa27.81■■■□□ 2.04
COL5A1-203ENST00000460264 YTHDC2Q9H6S0 1430 aaKnown RBP27.81■■■□□ 2.04
COL5A1-203ENST00000460264 C14orf93Q9H972 538 aaKnown RBP27.79■■■□□ 2.04
COL5A1-203ENST00000460264 RGS17Q9UGC6 210 aaPredicted RBP27.79■■■□□ 2.04
COL5A1-203ENST00000460264 LRP6O75581 1613 aa27.77■■■□□ 2.04
COL5A1-203ENST00000460264 SPATA31A6Q5VVP1 1343 aa27.76■■■□□ 2.03
COL5A1-203ENST00000460264 PLEKHH1Q9ULM0 1364 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms