RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 IDI1Q13907 227 aa24.25■■□□□ 1.47
CHCHD3-204ENST00000457942 NKTRP30414 1462 aaKnown RBP24.25■■□□□ 1.47
CHCHD3-204ENST00000457942 LMTK2Q8IWU2 1503 aa24.23■■□□□ 1.47
CHCHD3-204ENST00000457942 MSH6P52701 1360 aa24.22■■□□□ 1.47
CHCHD3-204ENST00000457942 ANKRD50Q9ULJ7 1429 aa24.21■■□□□ 1.47
CHCHD3-204ENST00000457942 PPARGC1BQ86YN6 1023 aaKnown RBP24.18■■□□□ 1.46
CHCHD3-204ENST00000457942 NOS1P29475 1434 aa24.17■■□□□ 1.46
CHCHD3-204ENST00000457942 MYO5BQ9ULV0 1848 aa24.17■■□□□ 1.46
CHCHD3-204ENST00000457942 GCC2Q8IWJ2 1684 aa24.16■■□□□ 1.46
CHCHD3-204ENST00000457942 COL16A1Q07092 1604 aaPredicted RBP24.16■■□□□ 1.46
CHCHD3-204ENST00000457942 JCADQ9P266 1359 aa24.16■■□□□ 1.46
CHCHD3-204ENST00000457942 LRP6O75581 1613 aa24.14■■□□□ 1.46
CHCHD3-204ENST00000457942 ITGAEP38570 1179 aa24.13■■□□□ 1.45
CHCHD3-204ENST00000457942 SLAIN2Q9P270 581 aa24.13■■□□□ 1.45
CHCHD3-204ENST00000457942 PPP1R15AO75807 674 aaPredicted RBP24.12■■□□□ 1.45
CHCHD3-204ENST00000457942 UNC13BO14795 1591 aa24.11■■□□□ 1.45
CHCHD3-204ENST00000457942 CHD2O14647 1828 aaKnown RBP24.1■■□□□ 1.45
CHCHD3-204ENST00000457942 MEX3CQ5U5Q3 659 aaKnown RBP24.1■■□□□ 1.45
CHCHD3-204ENST00000457942 ZFYVE9O95405 1425 aa24.1■■□□□ 1.45
CHCHD3-204ENST00000457942 RIMS2Q9UQ26 1411 aa24.1■■□□□ 1.45
CHCHD3-204ENST00000457942 C14orf37Q86TY3 774 aa24.09■■□□□ 1.45
CHCHD3-204ENST00000457942 RPRD2Q5VT52 1461 aaKnown RBP24.08■■□□□ 1.45
CHCHD3-204ENST00000457942 ROCK1Q13464 1354 aa24.08■■□□□ 1.45
CHCHD3-204ENST00000457942 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
CHCHD3-204ENST00000457942 TRIM52Q96A61 297 aa24.08■■□□□ 1.45
CHCHD3-204ENST00000457942 NUTM2DQ5VT03 806 aaPredicted RBP24.05■■□□□ 1.44
CHCHD3-204ENST00000457942 TMEM131LA2VDJ0 1609 aa24.05■■□□□ 1.44
CHCHD3-204ENST00000457942 CHGAP10645 457 aaKnown RBP24.04■■□□□ 1.44
CHCHD3-204ENST00000457942 SLC52A1Q9NWF4 448 aa24.04■■□□□ 1.44
CHCHD3-204ENST00000457942 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.03■■□□□ 1.44
CHCHD3-204ENST00000457942 AHDC1Q5TGY3 1603 aaPredicted RBP24.01■■□□□ 1.43
CHCHD3-204ENST00000457942 IQGAP3Q86VI3 1631 aa24.01■■□□□ 1.43
CHCHD3-204ENST00000457942 SHPRHQ149N8 1683 aa24.01■■□□□ 1.43
CHCHD3-204ENST00000457942 E9PCH4 1651 aa24■■□□□ 1.43
CHCHD3-204ENST00000457942 UPF1Q92900 1129 aaKnown RBP eCLIP23.98■■□□□ 1.43
CHCHD3-204ENST00000457942 SPATA31A6Q5VVP1 1343 aa23.98■■□□□ 1.43
CHCHD3-204ENST00000457942 NUTM2BA6NNL0 878 aaPredicted RBP23.97■■□□□ 1.43
CHCHD3-204ENST00000457942 NUTM2EB1AL46 878 aaPredicted RBP23.97■■□□□ 1.43
CHCHD3-204ENST00000457942 NUP155O75694 1391 aa23.97■■□□□ 1.43
CHCHD3-204ENST00000457942 NUTM2AQ8IVF1 878 aaPredicted RBP23.97■■□□□ 1.43
CHCHD3-204ENST00000457942 ADAMTS13Q76LX8 1427 aa23.96■■□□□ 1.43
CHCHD3-204ENST00000457942 DIP2AQ14689 1571 aa23.95■■□□□ 1.43
CHCHD3-204ENST00000457942 ZNF772Q68DY9 489 aaPredicted RBP23.95■■□□□ 1.42
CHCHD3-204ENST00000457942 ATF3P18847 181 aa23.94■■□□□ 1.42
CHCHD3-204ENST00000457942 CADPS2Q86UW7 1296 aa23.92■■□□□ 1.42
CHCHD3-204ENST00000457942 TBX22Q9Y458 520 aa23.92■■□□□ 1.42
CHCHD3-204ENST00000457942 TRPM2O94759 1503 aa23.91■■□□□ 1.42
CHCHD3-204ENST00000457942 HDGFP51858 240 aaKnown RBP23.91■■□□□ 1.42
CHCHD3-204ENST00000457942 NCOA3Q9Y6Q9 1424 aa23.91■■□□□ 1.42
CHCHD3-204ENST00000457942 RRBP1Q9P2E9 1410 aaKnown RBP23.9■■□□□ 1.42
CHCHD3-204ENST00000457942 BRINP3Q76B58 766 aa23.89■■□□□ 1.41
CHCHD3-204ENST00000457942 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.89■■□□□ 1.41
CHCHD3-204ENST00000457942 PTPRUQ92729 1446 aa23.89■■□□□ 1.41
CHCHD3-204ENST00000457942 ASXL1Q8IXJ9 1541 aa23.89■■□□□ 1.41
CHCHD3-204ENST00000457942 RXRBP28702 533 aa23.88■■□□□ 1.41
CHCHD3-204ENST00000457942 C19orf44Q9H6X5 657 aa23.88■■□□□ 1.41
CHCHD3-204ENST00000457942 AFF2P51816 1311 aa23.86■■□□□ 1.41
CHCHD3-204ENST00000457942 SPHKAPQ2M3C7 1700 aa23.85■■□□□ 1.41
CHCHD3-204ENST00000457942 AMOTL2Q9Y2J4 779 aa23.85■■□□□ 1.41
CHCHD3-204ENST00000457942 PIK3R4Q99570 1358 aa23.83■■□□□ 1.41
CHCHD3-204ENST00000457942 XRN1Q8IZH2 1706 aaKnown RBP23.83■■□□□ 1.41
CHCHD3-204ENST00000457942 NHSL1Q5SYE7 1610 aa23.83■■□□□ 1.41
CHCHD3-204ENST00000457942 NRXN3Q9Y4C0 1643 aa23.82■■□□□ 1.4
CHCHD3-204ENST00000457942 RGS12O14924 1447 aa23.82■■□□□ 1.4
CHCHD3-204ENST00000457942 MST1RQ04912 1400 aa23.8■■□□□ 1.4
CHCHD3-204ENST00000457942 DDX17Q92841 729 aaKnown RBP23.8■■□□□ 1.4
CHCHD3-204ENST00000457942 CDK12Q9NYV4 1490 aaPredicted RBP23.8■■□□□ 1.4
CHCHD3-204ENST00000457942 C8orf37Q96NL8 207 aa23.79■■□□□ 1.4
CHCHD3-204ENST00000457942 DCCP43146 1447 aa23.78■■□□□ 1.4
CHCHD3-204ENST00000457942 NAIPQ13075 1403 aa23.78■■□□□ 1.4
CHCHD3-204ENST00000457942 SETD5Q9C0A6 1442 aa23.76■■□□□ 1.39
CHCHD3-204ENST00000457942 NALCNQ8IZF0 1738 aa23.76■■□□□ 1.39
CHCHD3-204ENST00000457942 SRCAPQ6ZRS2 3230 aa23.74■■□□□ 1.39
CHCHD3-204ENST00000457942 SETBP1Q9Y6X0 1596 aa23.74■■□□□ 1.39
CHCHD3-204ENST00000457942 ZNF326Q5BKZ1 582 aaKnown RBP23.74■■□□□ 1.39
CHCHD3-204ENST00000457942 PNPLA6Q8IY17 1366 aa23.73■■□□□ 1.39
CHCHD3-204ENST00000457942 METP08581 1390 aa23.72■■□□□ 1.39
CHCHD3-204ENST00000457942 CLTCL1P53675 1640 aa23.7■■□□□ 1.39
CHCHD3-204ENST00000457942 HFM1A2PYH4 1435 aa23.7■■□□□ 1.38
CHCHD3-204ENST00000457942 ADGRL3Q9HAR2 1447 aa23.7■■□□□ 1.38
CHCHD3-204ENST00000457942 ADAMTS2O95450 1211 aa23.7■■□□□ 1.38
CHCHD3-204ENST00000457942 KIF1BO60333 1816 aa23.69■■□□□ 1.38
CHCHD3-204ENST00000457942 QTRT2Q9H974 415 aaKnown RBP23.69■■□□□ 1.38
CHCHD3-204ENST00000457942 LRRC59Q96AG4 307 aaKnown RBP23.68■■□□□ 1.38
CHCHD3-204ENST00000457942 RBM6P78332 1123 aaKnown RBP23.66■■□□□ 1.38
CHCHD3-204ENST00000457942 NGLY1Q96IV0 654 aa23.64■■□□□ 1.37
CHCHD3-204ENST00000457942 SLC4A1APQ9BWU0 796 aaKnown RBP23.63■■□□□ 1.37
CHCHD3-204ENST00000457942 NEXMIFQ5QGS0 1516 aa23.63■■□□□ 1.37
CHCHD3-204ENST00000457942 C1orf167Q5SNV9 1468 aa23.61■■□□□ 1.37
CHCHD3-204ENST00000457942 ATAD2Q6PL18 1390 aa23.59■■□□□ 1.37
CHCHD3-204ENST00000457942 ORAI2Q96SN7 254 aa23.56■■□□□ 1.36
CHCHD3-204ENST00000457942 USP21Q9UK80 565 aa23.56■■□□□ 1.36
CHCHD3-204ENST00000457942 EP400Q96L91 3159 aa23.55■■□□□ 1.36
CHCHD3-204ENST00000457942 LAMC1P11047 1609 aa23.54■■□□□ 1.36
CHCHD3-204ENST00000457942 ROBO2Q9HCK4 1378 aa23.52■■□□□ 1.36
CHCHD3-204ENST00000457942 PTCH1Q13635 1447 aa23.51■■□□□ 1.35
CHCHD3-204ENST00000457942 FOXD1Q16676 465 aa23.5■■□□□ 1.35
CHCHD3-204ENST00000457942 TRPC5Q9UL62 973 aaPredicted RBP23.49■■□□□ 1.35
CHCHD3-204ENST00000457942 SOS2Q07890 1332 aaPredicted RBP23.49■■□□□ 1.35
CHCHD3-204ENST00000457942 ATRNO75882 1429 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms