RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TOM1O60784 492 aa31.95■■■□□ 2.71
HMGB3-205ENST00000455596 PPP1R15AO75807 674 aaPredicted RBP31.93■■■□□ 2.7
HMGB3-205ENST00000455596 TRIM52Q96A61 297 aa31.93■■■□□ 2.7
HMGB3-205ENST00000455596 BCANQ96GW7 911 aa31.93■■■□□ 2.7
HMGB3-205ENST00000455596 SLC26A8Q96RN1 970 aa31.93■■■□□ 2.7
HMGB3-205ENST00000455596 PLEKHG1Q9ULL1 1385 aa31.93■■■□□ 2.7
HMGB3-205ENST00000455596 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.91■■■□□ 2.7
HMGB3-205ENST00000455596 KIF1BO60333 1816 aa31.91■■■□□ 2.7
HMGB3-205ENST00000455596 TRPM2O94759 1503 aa31.9■■■□□ 2.7
HMGB3-205ENST00000455596 CLTCL1P53675 1640 aa31.89■■■□□ 2.7
HMGB3-205ENST00000455596 CHD2O14647 1828 aaKnown RBP31.88■■■□□ 2.69
HMGB3-205ENST00000455596 ALKQ9UM73 1620 aa31.87■■■□□ 2.69
HMGB3-205ENST00000455596 NWD1Q149M9 1564 aa31.87■■■□□ 2.69
HMGB3-205ENST00000455596 SCAF1Q9H7N4 1312 aaKnown RBP31.86■■■□□ 2.69
HMGB3-205ENST00000455596 KCNA6P17658 529 aa31.86■■■□□ 2.69
HMGB3-205ENST00000455596 PIP4K2BP78356 416 aa31.85■■■□□ 2.69
HMGB3-205ENST00000455596 SENP3Q9H4L4 574 aaPredicted RBP31.85■■■□□ 2.69
HMGB3-205ENST00000455596 DIP2AQ14689 1571 aa31.82■■■□□ 2.68
HMGB3-205ENST00000455596 NUTM2DQ5VT03 806 aaPredicted RBP31.82■■■□□ 2.68
HMGB3-205ENST00000455596 NKTRP30414 1462 aaKnown RBP31.81■■■□□ 2.68
HMGB3-205ENST00000455596 SLC4A1APQ9BWU0 796 aaKnown RBP31.81■■■□□ 2.68
HMGB3-205ENST00000455596 TBX22Q9Y458 520 aa31.77■■■□□ 2.68
HMGB3-205ENST00000455596 ADAMTS13Q76LX8 1427 aa31.76■■■□□ 2.68
HMGB3-205ENST00000455596 ZNF326Q5BKZ1 582 aaKnown RBP31.76■■■□□ 2.67
HMGB3-205ENST00000455596 PROSER2Q86WR7 435 aaPredicted RBP31.75■■■□□ 2.67
HMGB3-205ENST00000455596 TMEM94Q12767 1356 aa31.75■■■□□ 2.67
HMGB3-205ENST00000455596 NEXMIFQ5QGS0 1516 aa31.72■■■□□ 2.67
HMGB3-205ENST00000455596 NRXN3Q9Y4C0 1643 aa31.71■■■□□ 2.67
HMGB3-205ENST00000455596 SETBP1Q9Y6X0 1596 aa31.7■■■□□ 2.67
HMGB3-205ENST00000455596 HSPA1LP34931 641 aa31.69■■■□□ 2.66
HMGB3-205ENST00000455596 PIK3R4Q99570 1358 aa31.68■■■□□ 2.66
HMGB3-205ENST00000455596 SETD5Q9C0A6 1442 aa31.67■■■□□ 2.66
HMGB3-205ENST00000455596 ACIN1Q9UKV3 1341 aaKnown RBP31.67■■■□□ 2.66
HMGB3-205ENST00000455596 RBM33Q96EV2 1170 aaKnown RBP31.66■■■□□ 2.66
HMGB3-205ENST00000455596 FOXD1Q16676 465 aa31.63■■■□□ 2.65
HMGB3-205ENST00000455596 MPHOSPH9Q99550 1183 aa31.63■■■□□ 2.65
HMGB3-205ENST00000455596 PPLO60437 1756 aa31.63■■■□□ 2.65
HMGB3-205ENST00000455596 DISP3Q9P2K9 1392 aa31.62■■■□□ 2.65
HMGB3-205ENST00000455596 MSH6P52701 1360 aa31.61■■■□□ 2.65
HMGB3-205ENST00000455596 XRN1Q8IZH2 1706 aaKnown RBP31.58■■■□□ 2.65
HMGB3-205ENST00000455596 NCOA3Q9Y6Q9 1424 aa31.58■■■□□ 2.65
HMGB3-205ENST00000455596 CCDC144AA2RUR9 1427 aa31.57■■■□□ 2.64
HMGB3-205ENST00000455596 PTPRUQ92729 1446 aa31.57■■■□□ 2.64
HMGB3-205ENST00000455596 ROBO1Q9Y6N7 1651 aa31.56■■■□□ 2.64
HMGB3-205ENST00000455596 RPGRIP1LQ68CZ1 1315 aa31.55■■■□□ 2.64
HMGB3-205ENST00000455596 AMOTL2Q9Y2J4 779 aa31.55■■■□□ 2.64
HMGB3-205ENST00000455596 RAB3GAP2Q9H2M9 1393 aa31.55■■■□□ 2.64
HMGB3-205ENST00000455596 VGFO15240 615 aaPredicted RBP31.54■■■□□ 2.64
HMGB3-205ENST00000455596 FAM135BQ49AJ0 1406 aa31.54■■■□□ 2.64
HMGB3-205ENST00000455596 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.53■■■□□ 2.64
HMGB3-205ENST00000455596 SETD1AO15047 1707 aaKnown RBP31.52■■■□□ 2.64
HMGB3-205ENST00000455596 IFT172Q9UG01 1749 aa31.5■■■□□ 2.63
HMGB3-205ENST00000455596 C14orf37Q86TY3 774 aa31.5■■■□□ 2.63
HMGB3-205ENST00000455596 METP08581 1390 aa31.5■■■□□ 2.63
HMGB3-205ENST00000455596 MED1Q15648 1581 aaPredicted RBP31.47■■■□□ 2.63
HMGB3-205ENST00000455596 SPATA31E1Q6ZUB1 1445 aa31.44■■■□□ 2.62
HMGB3-205ENST00000455596 SLAIN2Q9P270 581 aa31.44■■■□□ 2.62
HMGB3-205ENST00000455596 C19orf44Q9H6X5 657 aa31.43■■■□□ 2.62
HMGB3-205ENST00000455596 RGL3Q3MIN7 710 aa31.4■■■□□ 2.62
HMGB3-205ENST00000455596 PHLPP1O60346 1717 aa31.4■■■□□ 2.62
HMGB3-205ENST00000455596 CADPS2Q86UW7 1296 aa31.39■■■□□ 2.62
HMGB3-205ENST00000455596 ATF3P18847 181 aa31.38■■■□□ 2.61
HMGB3-205ENST00000455596 NALCNQ8IZF0 1738 aa31.36■■■□□ 2.61
HMGB3-205ENST00000455596 DCCP43146 1447 aa31.36■■■□□ 2.61
HMGB3-205ENST00000455596 ANKRD30BQ9BXX2 1392 aa31.36■■■□□ 2.61
HMGB3-205ENST00000455596 HRCP23327 699 aa31.33■■■□□ 2.61
HMGB3-205ENST00000455596 ADGRF5Q8IZF2 1346 aa31.32■■■□□ 2.6
HMGB3-205ENST00000455596 PTCH1Q13635 1447 aa31.32■■■□□ 2.6
HMGB3-205ENST00000455596 ILDR2Q71H61 639 aa31.31■■■□□ 2.6
HMGB3-205ENST00000455596 ADGRL3Q9HAR2 1447 aa31.3■■■□□ 2.6
HMGB3-205ENST00000455596 PRAG1Q86YV5 1406 aa31.29■■■□□ 2.6
HMGB3-205ENST00000455596 COL16A1Q07092 1604 aaPredicted RBP31.25■■■□□ 2.59
HMGB3-205ENST00000455596 PIK3C2GO75747 1445 aa31.24■■■□□ 2.59
HMGB3-205ENST00000455596 AHDC1Q5TGY3 1603 aaPredicted RBP31.24■■■□□ 2.59
HMGB3-205ENST00000455596 ROBO2Q9HCK4 1378 aa31.24■■■□□ 2.59
HMGB3-205ENST00000455596 MST1RQ04912 1400 aa31.23■■■□□ 2.59
HMGB3-205ENST00000455596 KNDC1Q76NI1 1749 aa31.22■■■□□ 2.59
HMGB3-205ENST00000455596 MYOM2P54296 1465 aa31.21■■■□□ 2.59
HMGB3-205ENST00000455596 LAMC1P11047 1609 aa31.21■■■□□ 2.59
HMGB3-205ENST00000455596 PHF23Q9BUL5 403 aaPredicted RBP31.21■■■□□ 2.59
HMGB3-205ENST00000455596 ASXL1Q8IXJ9 1541 aa31.19■■■□□ 2.58
HMGB3-205ENST00000455596 BRINP3Q76B58 766 aa31.18■■■□□ 2.58
HMGB3-205ENST00000455596 NHSL1Q5SYE7 1610 aa31.17■■■□□ 2.58
HMGB3-205ENST00000455596 NRXN1Q9ULB1 1477 aa31.17■■■□□ 2.58
HMGB3-205ENST00000455596 JCADQ9P266 1359 aa31.16■■■□□ 2.58
HMGB3-205ENST00000455596 LRPPRCP42704 1394 aaKnown RBP31.14■■■□□ 2.58
HMGB3-205ENST00000455596 TECPR2O15040 1411 aa31.14■■■□□ 2.58
HMGB3-205ENST00000455596 SHPRHQ149N8 1683 aa31.13■■■□□ 2.57
HMGB3-205ENST00000455596 TMEM132EQ6IEE7 984 aa31.12■■■□□ 2.57
HMGB3-205ENST00000455596 STK26Q9P289 416 aa31.12■■■□□ 2.57
HMGB3-205ENST00000455596 ABCC11Q96J66 1382 aa31.1■■■□□ 2.57
HMGB3-205ENST00000455596 C14orf93Q9H972 538 aaKnown RBP31.1■■■□□ 2.57
HMGB3-205ENST00000455596 YTHDC2Q9H6S0 1430 aaKnown RBP31.09■■■□□ 2.57
HMGB3-205ENST00000455596 CDC42BPGQ6DT37 1551 aa31.09■■■□□ 2.57
HMGB3-205ENST00000455596 C1orf167Q5SNV9 1468 aa31.08■■■□□ 2.57
HMGB3-205ENST00000455596 SOCS7O14512 581 aa31.05■■■□□ 2.56
HMGB3-205ENST00000455596 CFAP70Q5T0N1 1121 aa31.05■■■□□ 2.56
HMGB3-205ENST00000455596 DHX57Q6P158 1386 aaKnown RBP31.04■■■□□ 2.56
HMGB3-205ENST00000455596 WAPLQ7Z5K2 1190 aa31.03■■■□□ 2.56
HMGB3-205ENST00000455596 SPATA31A6Q5VVP1 1343 aa31.01■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms