RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 ILDR2Q71H61 639 aa17.95■□□□□ 0.46
TTC28-203ENST00000442232 MED1Q15648 1581 aaPredicted RBP17.95■□□□□ 0.46
TTC28-203ENST00000442232 NUP155O75694 1391 aa17.94■□□□□ 0.46
TTC28-203ENST00000442232 CHGAP10645 457 aaKnown RBP17.94■□□□□ 0.46
TTC28-203ENST00000442232 RIMS2Q9UQ26 1411 aa17.94■□□□□ 0.46
TTC28-203ENST00000442232 SLC26A8Q96RN1 970 aa17.93■□□□□ 0.46
TTC28-203ENST00000442232 NKTRP30414 1462 aaKnown RBP17.93■□□□□ 0.46
TTC28-203ENST00000442232 NWD1Q149M9 1564 aa17.92■□□□□ 0.46
TTC28-203ENST00000442232 KCNA6P17658 529 aa17.92■□□□□ 0.46
TTC28-203ENST00000442232 SENP3Q9H4L4 574 aaPredicted RBP17.92■□□□□ 0.46
TTC28-203ENST00000442232 ZFYVE9O95405 1425 aa17.91■□□□□ 0.46
TTC28-203ENST00000442232 SOCS7O14512 581 aa17.91■□□□□ 0.46
TTC28-203ENST00000442232 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.91■□□□□ 0.46
TTC28-203ENST00000442232 PLEKHG1Q9ULL1 1385 aa17.91■□□□□ 0.46
TTC28-203ENST00000442232 PROSER2Q86WR7 435 aaPredicted RBP17.9■□□□□ 0.46
TTC28-203ENST00000442232 TMEM94Q12767 1356 aa17.9■□□□□ 0.46
TTC28-203ENST00000442232 SPHKAPQ2M3C7 1700 aa17.89■□□□□ 0.46
TTC28-203ENST00000442232 CHD2O14647 1828 aaKnown RBP17.88■□□□□ 0.45
TTC28-203ENST00000442232 DIP2AQ14689 1571 aa17.87■□□□□ 0.45
TTC28-203ENST00000442232 PHF23Q9BUL5 403 aaPredicted RBP17.87■□□□□ 0.45
TTC28-203ENST00000442232 RRBP1Q9P2E9 1410 aaKnown RBP17.86■□□□□ 0.45
TTC28-203ENST00000442232 MSH6P52701 1360 aa17.85■□□□□ 0.45
TTC28-203ENST00000442232 ROBO1Q9Y6N7 1651 aa17.83■□□□□ 0.44
TTC28-203ENST00000442232 FAM135BQ49AJ0 1406 aa17.82■□□□□ 0.44
TTC28-203ENST00000442232 TRPM2O94759 1503 aa17.82■□□□□ 0.44
TTC28-203ENST00000442232 TBX22Q9Y458 520 aa17.81■□□□□ 0.44
TTC28-203ENST00000442232 NUTM2DQ5VT03 806 aaPredicted RBP17.8■□□□□ 0.44
TTC28-203ENST00000442232 RBM33Q96EV2 1170 aaKnown RBP17.8■□□□□ 0.44
TTC28-203ENST00000442232 ZNF326Q5BKZ1 582 aaKnown RBP17.79■□□□□ 0.44
TTC28-203ENST00000442232 C14orf37Q86TY3 774 aa17.79■□□□□ 0.44
TTC28-203ENST00000442232 KIF1BO60333 1816 aa17.79■□□□□ 0.44
TTC28-203ENST00000442232 PIK3R4Q99570 1358 aa17.79■□□□□ 0.44
TTC28-203ENST00000442232 NAIPQ13075 1403 aa17.78■□□□□ 0.44
TTC28-203ENST00000442232 ADAMTS13Q76LX8 1427 aa17.77■□□□□ 0.44
TTC28-203ENST00000442232 NCOA3Q9Y6Q9 1424 aa17.76■□□□□ 0.43
TTC28-203ENST00000442232 PHLPP1O60346 1717 aa17.75■□□□□ 0.43
TTC28-203ENST00000442232 CLTCL1P53675 1640 aa17.75■□□□□ 0.43
TTC28-203ENST00000442232 TRIM52Q96A61 297 aa17.74■□□□□ 0.43
TTC28-203ENST00000442232 SETBP1Q9Y6X0 1596 aa17.74■□□□□ 0.43
TTC28-203ENST00000442232 HFM1A2PYH4 1435 aa17.73■□□□□ 0.43
TTC28-203ENST00000442232 SLAIN2Q9P270 581 aa17.73■□□□□ 0.43
TTC28-203ENST00000442232 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.72■□□□□ 0.43
TTC28-203ENST00000442232 NRXN3Q9Y4C0 1643 aa17.72■□□□□ 0.43
TTC28-203ENST00000442232 ATF3P18847 181 aa17.7■□□□□ 0.42
TTC28-203ENST00000442232 CADPS2Q86UW7 1296 aa17.7■□□□□ 0.42
TTC28-203ENST00000442232 XRN1Q8IZH2 1706 aaKnown RBP17.69■□□□□ 0.42
TTC28-203ENST00000442232 NEXMIFQ5QGS0 1516 aa17.69■□□□□ 0.42
TTC28-203ENST00000442232 AMOTL2Q9Y2J4 779 aa17.69■□□□□ 0.42
TTC28-203ENST00000442232 C19orf44Q9H6X5 657 aa17.68■□□□□ 0.42
TTC28-203ENST00000442232 SLC4A1APQ9BWU0 796 aaKnown RBP17.67■□□□□ 0.42
TTC28-203ENST00000442232 PTPRUQ92729 1446 aa17.66■□□□□ 0.42
TTC28-203ENST00000442232 JCADQ9P266 1359 aa17.65■□□□□ 0.42
TTC28-203ENST00000442232 DCCP43146 1447 aa17.64■□□□□ 0.42
TTC28-203ENST00000442232 COL16A1Q07092 1604 aaPredicted RBP17.64■□□□□ 0.41
TTC28-203ENST00000442232 AHDC1Q5TGY3 1603 aaPredicted RBP17.62■□□□□ 0.41
TTC28-203ENST00000442232 PPLO60437 1756 aa17.61■□□□□ 0.41
TTC28-203ENST00000442232 VGFO15240 615 aaPredicted RBP17.61■□□□□ 0.41
TTC28-203ENST00000442232 METP08581 1390 aa17.61■□□□□ 0.41
TTC28-203ENST00000442232 RPGRIP1LQ68CZ1 1315 aa17.6■□□□□ 0.41
TTC28-203ENST00000442232 SHPRHQ149N8 1683 aa17.59■□□□□ 0.41
TTC28-203ENST00000442232 NALCNQ8IZF0 1738 aa17.58■□□□□ 0.41
TTC28-203ENST00000442232 ADGRL3Q9HAR2 1447 aa17.58■□□□□ 0.41
TTC28-203ENST00000442232 CCDC144AA2RUR9 1427 aa17.57■□□□□ 0.4
TTC28-203ENST00000442232 MEX3CQ5U5Q3 659 aaKnown RBP17.57■□□□□ 0.4
TTC28-203ENST00000442232 SETD1AO15047 1707 aaKnown RBP17.57■□□□□ 0.4
TTC28-203ENST00000442232 ASXL1Q8IXJ9 1541 aa17.57■□□□□ 0.4
TTC28-203ENST00000442232 SPATA31A6Q5VVP1 1343 aa17.56■□□□□ 0.4
TTC28-203ENST00000442232 PTCH1Q13635 1447 aa17.55■□□□□ 0.4
TTC28-203ENST00000442232 ACIN1Q9UKV3 1341 aaKnown RBP17.55■□□□□ 0.4
TTC28-203ENST00000442232 BRINP3Q76B58 766 aa17.55■□□□□ 0.4
TTC28-203ENST00000442232 RGS17Q9UGC6 210 aaPredicted RBP17.55■□□□□ 0.4
TTC28-203ENST00000442232 MST1RQ04912 1400 aa17.55■□□□□ 0.4
TTC28-203ENST00000442232 NHSL1Q5SYE7 1610 aa17.54■□□□□ 0.4
TTC28-203ENST00000442232 FOXD1Q16676 465 aa17.53■□□□□ 0.4
TTC28-203ENST00000442232 IFT172Q9UG01 1749 aa17.5■□□□□ 0.39
TTC28-203ENST00000442232 POTEAQ6S8J7 498 aa17.5■□□□□ 0.39
TTC28-203ENST00000442232 MPHOSPH9Q99550 1183 aa17.5■□□□□ 0.39
TTC28-203ENST00000442232 LRP6O75581 1613 aa17.5■□□□□ 0.39
TTC28-203ENST00000442232 PRAG1Q86YV5 1406 aa17.49■□□□□ 0.39
TTC28-203ENST00000442232 ANKRD30BQ9BXX2 1392 aa17.48■□□□□ 0.39
TTC28-203ENST00000442232 ROBO2Q9HCK4 1378 aa17.48■□□□□ 0.39
TTC28-203ENST00000442232 SETD5Q9C0A6 1442 aa17.47■□□□□ 0.39
TTC28-203ENST00000442232 RGL3Q3MIN7 710 aa17.47■□□□□ 0.39
TTC28-203ENST00000442232 C1orf167Q5SNV9 1468 aa17.46■□□□□ 0.39
TTC28-203ENST00000442232 NUTM2BA6NNL0 878 aaPredicted RBP17.46■□□□□ 0.39
TTC28-203ENST00000442232 NUTM2EB1AL46 878 aaPredicted RBP17.46■□□□□ 0.39
TTC28-203ENST00000442232 ZNF772Q68DY9 489 aaPredicted RBP17.46■□□□□ 0.39
TTC28-203ENST00000442232 NUTM2AQ8IVF1 878 aaPredicted RBP17.46■□□□□ 0.39
TTC28-203ENST00000442232 LRRC59Q96AG4 307 aaKnown RBP17.46■□□□□ 0.39
TTC28-203ENST00000442232 SPATA31E1Q6ZUB1 1445 aa17.46■□□□□ 0.39
TTC28-203ENST00000442232 CDC42BPGQ6DT37 1551 aa17.44■□□□□ 0.38
TTC28-203ENST00000442232 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
TTC28-203ENST00000442232 ADGRF5Q8IZF2 1346 aa17.43■□□□□ 0.38
TTC28-203ENST00000442232 LAMC1P11047 1609 aa17.42■□□□□ 0.38
TTC28-203ENST00000442232 DDX17Q92841 729 aaKnown RBP17.4■□□□□ 0.38
TTC28-203ENST00000442232 STK26Q9P289 416 aa17.4■□□□□ 0.38
TTC28-203ENST00000442232 PNPLA6Q8IY17 1366 aa17.4■□□□□ 0.38
TTC28-203ENST00000442232 PIK3C2GO75747 1445 aa17.39■□□□□ 0.38
TTC28-203ENST00000442232 LRPPRCP42704 1394 aaKnown RBP17.39■□□□□ 0.37
TTC28-203ENST00000442232 RAB3GAP2Q9H2M9 1393 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms