RNA–Protein interactions for RNA: ENST00000442010.2

HMGB3P22-201, Transcript of high mobility group box 3 pseudogene 22, humanhuman

TSL 2 BASIC

Gene HMGB3P22, Length 597 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P22-201ENST00000442010 TOM1O60784 492 aa28.59■■■□□ 2.17
HMGB3P22-201ENST00000442010 SLC26A8Q96RN1 970 aa28.59■■■□□ 2.17
HMGB3P22-201ENST00000442010 NWD1Q149M9 1564 aa28.57■■■□□ 2.16
HMGB3P22-201ENST00000442010 CHD2O14647 1828 aaKnown RBP28.56■■■□□ 2.16
HMGB3P22-201ENST00000442010 CHGAP10645 457 aaKnown RBP28.56■■■□□ 2.16
HMGB3P22-201ENST00000442010 HDGFP51858 240 aaKnown RBP28.56■■■□□ 2.16
HMGB3P22-201ENST00000442010 KCNA6P17658 529 aa28.55■■■□□ 2.16
HMGB3P22-201ENST00000442010 CLTCL1P53675 1640 aa28.54■■■□□ 2.16
HMGB3P22-201ENST00000442010 TRPM2O94759 1503 aa28.54■■■□□ 2.16
HMGB3P22-201ENST00000442010 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.53■■■□□ 2.16
HMGB3P22-201ENST00000442010 PPP1R15AO75807 674 aaPredicted RBP28.5■■■□□ 2.15
HMGB3P22-201ENST00000442010 PIP4K2BP78356 416 aa28.5■■■□□ 2.15
HMGB3P22-201ENST00000442010 KIF1BO60333 1816 aa28.49■■■□□ 2.15
HMGB3P22-201ENST00000442010 ADAMTS13Q76LX8 1427 aa28.49■■■□□ 2.15
HMGB3P22-201ENST00000442010 NKTRP30414 1462 aaKnown RBP28.48■■■□□ 2.15
HMGB3P22-201ENST00000442010 TRIM52Q96A61 297 aa28.48■■■□□ 2.15
HMGB3P22-201ENST00000442010 NUTM2DQ5VT03 806 aaPredicted RBP28.47■■■□□ 2.15
HMGB3P22-201ENST00000442010 BCANQ96GW7 911 aa28.47■■■□□ 2.15
HMGB3P22-201ENST00000442010 SENP3Q9H4L4 574 aaPredicted RBP28.47■■■□□ 2.15
HMGB3P22-201ENST00000442010 TBX22Q9Y458 520 aa28.47■■■□□ 2.15
HMGB3P22-201ENST00000442010 DIP2AQ14689 1571 aa28.46■■■□□ 2.15
HMGB3P22-201ENST00000442010 TMEM94Q12767 1356 aa28.46■■■□□ 2.15
HMGB3P22-201ENST00000442010 SCAF1Q9H7N4 1312 aaKnown RBP28.44■■■□□ 2.14
HMGB3P22-201ENST00000442010 NRXN3Q9Y4C0 1643 aa28.44■■■□□ 2.14
HMGB3P22-201ENST00000442010 HSPA1LP34931 641 aa28.43■■■□□ 2.14
HMGB3P22-201ENST00000442010 SLC4A1APQ9BWU0 796 aaKnown RBP28.42■■■□□ 2.14
HMGB3P22-201ENST00000442010 NEXMIFQ5QGS0 1516 aa28.41■■■□□ 2.14
HMGB3P22-201ENST00000442010 PROSER2Q86WR7 435 aaPredicted RBP28.4■■■□□ 2.14
HMGB3P22-201ENST00000442010 SETBP1Q9Y6X0 1596 aa28.4■■■□□ 2.14
HMGB3P22-201ENST00000442010 PIK3R4Q99570 1358 aa28.38■■■□□ 2.13
HMGB3P22-201ENST00000442010 RBM33Q96EV2 1170 aaKnown RBP28.37■■■□□ 2.13
HMGB3P22-201ENST00000442010 ZNF326Q5BKZ1 582 aaKnown RBP28.35■■■□□ 2.13
HMGB3P22-201ENST00000442010 DISP3Q9P2K9 1392 aa28.33■■■□□ 2.13
HMGB3P22-201ENST00000442010 PTPRUQ92729 1446 aa28.32■■■□□ 2.12
HMGB3P22-201ENST00000442010 SETD5Q9C0A6 1442 aa28.3■■■□□ 2.12
HMGB3P22-201ENST00000442010 NCOA3Q9Y6Q9 1424 aa28.3■■■□□ 2.12
HMGB3P22-201ENST00000442010 FOXD1Q16676 465 aa28.3■■■□□ 2.12
HMGB3P22-201ENST00000442010 XRN1Q8IZH2 1706 aaKnown RBP28.29■■■□□ 2.12
HMGB3P22-201ENST00000442010 FAM135BQ49AJ0 1406 aa28.29■■■□□ 2.12
HMGB3P22-201ENST00000442010 MPHOSPH9Q99550 1183 aa28.29■■■□□ 2.12
HMGB3P22-201ENST00000442010 PPLO60437 1756 aa28.29■■■□□ 2.12
HMGB3P22-201ENST00000442010 MSH6P52701 1360 aa28.26■■■□□ 2.12
HMGB3P22-201ENST00000442010 SETD1AO15047 1707 aaKnown RBP28.26■■■□□ 2.11
HMGB3P22-201ENST00000442010 ROBO1Q9Y6N7 1651 aa28.26■■■□□ 2.11
HMGB3P22-201ENST00000442010 AMOTL2Q9Y2J4 779 aa28.25■■■□□ 2.11
HMGB3P22-201ENST00000442010 METP08581 1390 aa28.24■■■□□ 2.11
HMGB3P22-201ENST00000442010 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.23■■■□□ 2.11
HMGB3P22-201ENST00000442010 ACIN1Q9UKV3 1341 aaKnown RBP28.23■■■□□ 2.11
HMGB3P22-201ENST00000442010 RPGRIP1LQ68CZ1 1315 aa28.22■■■□□ 2.11
HMGB3P22-201ENST00000442010 MED1Q15648 1581 aaPredicted RBP28.21■■■□□ 2.11
HMGB3P22-201ENST00000442010 CCDC144AA2RUR9 1427 aa28.2■■■□□ 2.11
HMGB3P22-201ENST00000442010 RAB3GAP2Q9H2M9 1393 aa28.2■■■□□ 2.1
HMGB3P22-201ENST00000442010 VGFO15240 615 aaPredicted RBP28.19■■■□□ 2.1
HMGB3P22-201ENST00000442010 SPATA31E1Q6ZUB1 1445 aa28.18■■■□□ 2.1
HMGB3P22-201ENST00000442010 IFT172Q9UG01 1749 aa28.18■■■□□ 2.1
HMGB3P22-201ENST00000442010 ILDR2Q71H61 639 aa28.17■■■□□ 2.1
HMGB3P22-201ENST00000442010 SLAIN2Q9P270 581 aa28.16■■■□□ 2.1
HMGB3P22-201ENST00000442010 C19orf44Q9H6X5 657 aa28.15■■■□□ 2.1
HMGB3P22-201ENST00000442010 C14orf37Q86TY3 774 aa28.11■■■□□ 2.09
HMGB3P22-201ENST00000442010 CADPS2Q86UW7 1296 aa28.09■■■□□ 2.09
HMGB3P22-201ENST00000442010 DCCP43146 1447 aa28.09■■■□□ 2.09
HMGB3P22-201ENST00000442010 PHLPP1O60346 1717 aa28.08■■■□□ 2.09
HMGB3P22-201ENST00000442010 PRAG1Q86YV5 1406 aa28.08■■■□□ 2.09
HMGB3P22-201ENST00000442010 NALCNQ8IZF0 1738 aa28.07■■■□□ 2.08
HMGB3P22-201ENST00000442010 ADGRF5Q8IZF2 1346 aa28.06■■■□□ 2.08
HMGB3P22-201ENST00000442010 ATF3P18847 181 aa28.05■■■□□ 2.08
HMGB3P22-201ENST00000442010 PTCH1Q13635 1447 aa28.05■■■□□ 2.08
HMGB3P22-201ENST00000442010 RGL3Q3MIN7 710 aa28.05■■■□□ 2.08
HMGB3P22-201ENST00000442010 ANKRD30BQ9BXX2 1392 aa28.04■■■□□ 2.08
HMGB3P22-201ENST00000442010 HRCP23327 699 aa28.04■■■□□ 2.08
HMGB3P22-201ENST00000442010 ADGRL3Q9HAR2 1447 aa28.03■■■□□ 2.08
HMGB3P22-201ENST00000442010 COL16A1Q07092 1604 aaPredicted RBP28.02■■■□□ 2.08
HMGB3P22-201ENST00000442010 ROBO2Q9HCK4 1378 aa28■■■□□ 2.07
HMGB3P22-201ENST00000442010 AHDC1Q5TGY3 1603 aaPredicted RBP28■■■□□ 2.07
HMGB3P22-201ENST00000442010 MST1RQ04912 1400 aa28■■■□□ 2.07
HMGB3P22-201ENST00000442010 PIK3C2GO75747 1445 aa27.99■■■□□ 2.07
HMGB3P22-201ENST00000442010 ASXL1Q8IXJ9 1541 aa27.97■■■□□ 2.07
HMGB3P22-201ENST00000442010 NRXN1Q9ULB1 1477 aa27.95■■■□□ 2.07
HMGB3P22-201ENST00000442010 BRINP3Q76B58 766 aa27.95■■■□□ 2.06
HMGB3P22-201ENST00000442010 KNDC1Q76NI1 1749 aa27.93■■■□□ 2.06
HMGB3P22-201ENST00000442010 MYOM2P54296 1465 aa27.93■■■□□ 2.06
HMGB3P22-201ENST00000442010 NHSL1Q5SYE7 1610 aa27.92■■■□□ 2.06
HMGB3P22-201ENST00000442010 TECPR2O15040 1411 aa27.91■■■□□ 2.06
HMGB3P22-201ENST00000442010 JCADQ9P266 1359 aa27.9■■■□□ 2.06
HMGB3P22-201ENST00000442010 SOCS7O14512 581 aa27.89■■■□□ 2.06
HMGB3P22-201ENST00000442010 LRPPRCP42704 1394 aaKnown RBP27.88■■■□□ 2.05
HMGB3P22-201ENST00000442010 PHF23Q9BUL5 403 aaPredicted RBP27.88■■■□□ 2.05
HMGB3P22-201ENST00000442010 SHPRHQ149N8 1683 aa27.87■■■□□ 2.05
HMGB3P22-201ENST00000442010 LAMC1P11047 1609 aa27.87■■■□□ 2.05
HMGB3P22-201ENST00000442010 ABCC11Q96J66 1382 aa27.86■■■□□ 2.05
HMGB3P22-201ENST00000442010 C14orf93Q9H972 538 aaKnown RBP27.86■■■□□ 2.05
HMGB3P22-201ENST00000442010 RGS17Q9UGC6 210 aaPredicted RBP27.86■■■□□ 2.05
HMGB3P22-201ENST00000442010 C1orf167Q5SNV9 1468 aa27.85■■■□□ 2.05
HMGB3P22-201ENST00000442010 TMEM132EQ6IEE7 984 aa27.85■■■□□ 2.05
HMGB3P22-201ENST00000442010 YTHDC2Q9H6S0 1430 aaKnown RBP27.83■■■□□ 2.05
HMGB3P22-201ENST00000442010 CDC42BPGQ6DT37 1551 aa27.82■■■□□ 2.04
HMGB3P22-201ENST00000442010 STK26Q9P289 416 aa27.81■■■□□ 2.04
HMGB3P22-201ENST00000442010 CFAP70Q5T0N1 1121 aa27.79■■■□□ 2.04
HMGB3P22-201ENST00000442010 WAPLQ7Z5K2 1190 aa27.79■■■□□ 2.04
HMGB3P22-201ENST00000442010 PLEKHH1Q9ULM0 1364 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms