RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IFIT2P09913 472 aaKnown RBP18.89■□□□□ 0.61
PTPRF-206ENST00000429895 FOSBP53539 338 aa18.89■□□□□ 0.61
PTPRF-206ENST00000429895 DDX49Q9Y6V7 483 aaKnown RBP18.89■□□□□ 0.61
PTPRF-206ENST00000429895 CYB5RLQ6IPT4 315 aa18.88■□□□□ 0.61
PTPRF-206ENST00000429895 CCDC144AA2RUR9 1427 aa18.88■□□□□ 0.61
PTPRF-206ENST00000429895 PATL2C9JE40 543 aaKnown RBP18.88■□□□□ 0.61
PTPRF-206ENST00000429895 COG6Q9Y2V7 657 aa18.88■□□□□ 0.61
PTPRF-206ENST00000429895 TPM1P09493 284 aa18.88■□□□□ 0.61
PTPRF-206ENST00000429895 DDX11L8A8MPP1 907 aa18.87■□□□□ 0.61
PTPRF-206ENST00000429895 PHLDB1Q86UU1 1377 aa18.87■□□□□ 0.61
PTPRF-206ENST00000429895 CCDC18Q5T9S5 1454 aa18.87■□□□□ 0.61
PTPRF-206ENST00000429895 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
PTPRF-206ENST00000429895 NFXL1Q6ZNB6 911 aa18.87■□□□□ 0.61
PTPRF-206ENST00000429895 LRRFIP1Q32MZ4 808 aaKnown RBP18.86■□□□□ 0.61
PTPRF-206ENST00000429895 VGFO15240 615 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-206ENST00000429895 RSPH4AQ5TD94 716 aa18.86■□□□□ 0.61
PTPRF-206ENST00000429895 PHF23Q9BUL5 403 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-206ENST00000429895 CPLX1O14810 134 aa18.86■□□□□ 0.61
PTPRF-206ENST00000429895 CPLX2Q6PUV4 134 aaKnown RBP18.86■□□□□ 0.61
PTPRF-206ENST00000429895 ZNF592Q92610 1267 aa18.86■□□□□ 0.61
PTPRF-206ENST00000429895 CRBNQ96SW2 442 aa18.85■□□□□ 0.61
PTPRF-206ENST00000429895 USP35Q9P2H5 1018 aa18.85■□□□□ 0.61
PTPRF-206ENST00000429895 JPH4Q96JJ6 628 aa18.85■□□□□ 0.61
PTPRF-206ENST00000429895 FYB1O15117 783 aa18.85■□□□□ 0.61
PTPRF-206ENST00000429895 ATP6V1DQ9Y5K8 247 aa18.84■□□□□ 0.61
PTPRF-206ENST00000429895 RUFY2Q8WXA3 655 aa18.84■□□□□ 0.61
PTPRF-206ENST00000429895 E9PSI1 815 aa18.83■□□□□ 0.6
PTPRF-206ENST00000429895 CENPQQ7L2Z9 268 aaPredicted RBP18.83■□□□□ 0.6
PTPRF-206ENST00000429895 EXOC6Q8TAG9 804 aa18.83■□□□□ 0.6
PTPRF-206ENST00000429895 CHMP4CQ96CF2 233 aa18.83■□□□□ 0.6
PTPRF-206ENST00000429895 CCDC43Q96MW1 224 aaKnown RBP18.82■□□□□ 0.6
PTPRF-206ENST00000429895 ZKSCAN1P17029 563 aaPredicted RBP18.82■□□□□ 0.6
PTPRF-206ENST00000429895 DIAPH1O60610 1272 aaKnown RBP18.82■□□□□ 0.6
PTPRF-206ENST00000429895 FKBP5Q13451 457 aaPredicted RBP18.82■□□□□ 0.6
PTPRF-206ENST00000429895 RBM33Q96EV2 1170 aaKnown RBP18.82■□□□□ 0.6
PTPRF-206ENST00000429895 G3BP1Q13283 466 aaKnown RBP eCLIP18.82■□□□□ 0.64e-7■□□□□ 8.1
PTPRF-206ENST00000429895 TRDNQ13061 729 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 CCDC47Q96A33 483 aaKnown RBP18.81■□□□□ 0.6
PTPRF-206ENST00000429895 APAF1O14727 1248 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 RIPK4P57078 832 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 UACAQ9BZF9 1416 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 DDX58O95786 925 aaKnown RBP18.81■□□□□ 0.6
PTPRF-206ENST00000429895 FAM161AQ3B820 660 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 NUTM2GQ5VZR2 741 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 TSHZ2Q9NRE2 1034 aa18.81■□□□□ 0.6
PTPRF-206ENST00000429895 ERICH2A1L162 156 aa18.8■□□□□ 0.6
PTPRF-206ENST00000429895 AIMP1Q12904 312 aaKnown RBP18.8■□□□□ 0.6
PTPRF-206ENST00000429895 MTMR7Q9Y216 660 aa18.8■□□□□ 0.6
PTPRF-206ENST00000429895 CCDC70Q6NSX1 233 aa18.8■□□□□ 0.6
PTPRF-206ENST00000429895 KDM4AO75164 1064 aa18.79■□□□□ 0.6
PTPRF-206ENST00000429895 BICD2Q8TD16 824 aa18.79■□□□□ 0.6
PTPRF-206ENST00000429895 CCDC27Q2M243 656 aa18.78■□□□□ 0.6
PTPRF-206ENST00000429895 PDE4AP27815 886 aa18.77■□□□□ 0.6
PTPRF-206ENST00000429895 NEUROD6Q96NK8 337 aa18.77■□□□□ 0.6
PTPRF-206ENST00000429895 HMOX1P09601 288 aa18.77■□□□□ 0.59
PTPRF-206ENST00000429895 RRP1P56182 461 aaKnown RBP18.76■□□□□ 0.59
PTPRF-206ENST00000429895 TSPYL4Q9UJ04 414 aa18.76■□□□□ 0.59
PTPRF-206ENST00000429895 IPO7O95373 1038 aaKnown RBP18.76■□□□□ 0.59
PTPRF-206ENST00000429895 ANKRD20A12PQ8NF67 263 aa18.76■□□□□ 0.59
PTPRF-206ENST00000429895 VPS37CA5D8V6 355 aaPredicted RBP18.76■□□□□ 0.59
PTPRF-206ENST00000429895 REC8O95072 547 aa18.75■□□□□ 0.59
PTPRF-206ENST00000429895 RIC3Q7Z5B4 369 aa18.75■□□□□ 0.59
PTPRF-206ENST00000429895 FAM177BA6PVY3 158 aa18.74■□□□□ 0.59
PTPRF-206ENST00000429895 SETQ01105 290 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-206ENST00000429895 RAPGEF2Q9Y4G8 1499 aa18.74■□□□□ 0.59
PTPRF-206ENST00000429895 ATF3P18847 181 aa18.74■□□□□ 0.59
PTPRF-206ENST00000429895 RAPGEF4Q8WZA2 1011 aa18.74■□□□□ 0.59
PTPRF-206ENST00000429895 WASHC4Q2M389 1173 aa18.74■□□□□ 0.59
PTPRF-206ENST00000429895 DDX19BQ9UMR2 479 aa18.73■□□□□ 0.59
PTPRF-206ENST00000429895 RNF20Q5VTR2 975 aa18.73■□□□□ 0.59
PTPRF-206ENST00000429895 NLRP2Q9NX02 1062 aa18.73■□□□□ 0.59
PTPRF-206ENST00000429895 NAP1L1P55209 391 aaKnown RBP18.72■□□□□ 0.59
PTPRF-206ENST00000429895 SKOR2Q2VWA4 1001 aaPredicted RBP18.72■□□□□ 0.59
PTPRF-206ENST00000429895 DZIP1LQ8IYY4 767 aaKnown RBP18.72■□□□□ 0.59
PTPRF-206ENST00000429895 HOMER1Q86YM7 354 aa18.72■□□□□ 0.59
PTPRF-206ENST00000429895 API5Q9BZZ5 524 aaKnown RBP18.72■□□□□ 0.59
PTPRF-206ENST00000429895 HOOK1Q9UJC3 728 aaKnown RBP18.71■□□□□ 0.59
PTPRF-206ENST00000429895 USP47Q96K76 1375 aa18.71■□□□□ 0.59
PTPRF-206ENST00000429895 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.71■□□□□ 0.59
PTPRF-206ENST00000429895 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.71■□□□□ 0.591e-6■■■■■ 54.3
PTPRF-206ENST00000429895 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
PTPRF-206ENST00000429895 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
PTPRF-206ENST00000429895 BCL11BQ9C0K0 894 aaPredicted RBP18.69■□□□□ 0.58
PTPRF-206ENST00000429895 IKQ13123 557 aaPredicted RBP18.69■□□□□ 0.58
PTPRF-206ENST00000429895 SMC3Q9UQE7 1217 aa18.69■□□□□ 0.58
PTPRF-206ENST00000429895 GPS2Q13227 327 aa18.69■□□□□ 0.58
PTPRF-206ENST00000429895 CT47A1Q5JQC4 288 aaPredicted RBP18.69■□□□□ 0.58
PTPRF-206ENST00000429895 SAFBQ15424 915 aaKnown RBP eCLIP18.67■□□□□ 0.58
PTPRF-206ENST00000429895 RALYLQ86SE5 291 aaKnown RBP18.67■□□□□ 0.58
PTPRF-206ENST00000429895 PTPRGP23470 1445 aa18.67■□□□□ 0.58
PTPRF-206ENST00000429895 ROCK1Q13464 1354 aa18.67■□□□□ 0.58
PTPRF-206ENST00000429895 FAM69CQ0P6D2 419 aa18.66■□□□□ 0.58
PTPRF-206ENST00000429895 ODF2Q5BJF6 829 aa18.66■□□□□ 0.58
PTPRF-206ENST00000429895 SASS6Q6UVJ0 657 aa18.66■□□□□ 0.58
PTPRF-206ENST00000429895 LNPKQ9C0E8 428 aa18.66■□□□□ 0.58
PTPRF-206ENST00000429895 PRKRIP1Q9H875 184 aaPredicted RBP18.65■□□□□ 0.58
PTPRF-206ENST00000429895 PPP1R1BQ9UD71 204 aaPredicted RBP18.65■□□□□ 0.58
PTPRF-206ENST00000429895 ERC2O15083 957 aa18.65■□□□□ 0.58
PTPRF-206ENST00000429895 GGNBP2Q9H3C7 697 aa18.65■□□□□ 0.58
PTPRF-206ENST00000429895 ZFYVE27Q5T4F4 411 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms