RNA–Protein interactions for RNA: ENST00000428894.1

HMGB3P5-201, Transcript of high mobility group box 3 pseudogene 5, humanhuman

BASIC

Gene HMGB3P5, Length 612 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P5-201ENST00000428894 IFFO2Q5TF58 517 aa12.34□□□□□ -0.43
HMGB3P5-201ENST00000428894 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
HMGB3P5-201ENST00000428894 APLP1P51693 650 aa12.33□□□□□ -0.44
HMGB3P5-201ENST00000428894 SLC24A1O60721 1099 aa12.31□□□□□ -0.44
HMGB3P5-201ENST00000428894 KCNC4Q03721 635 aa12.31□□□□□ -0.44
HMGB3P5-201ENST00000428894 MAP2K5Q13163 448 aa12.29□□□□□ -0.44
HMGB3P5-201ENST00000428894 NLRP7Q8WX94 980 aa12.29□□□□□ -0.44
HMGB3P5-201ENST00000428894 TJAP1Q5JTD0 557 aa12.27□□□□□ -0.45
HMGB3P5-201ENST00000428894 PHOX2BQ99453 314 aa12.27□□□□□ -0.45
HMGB3P5-201ENST00000428894 MTRQ99707 1265 aa12.27□□□□□ -0.45
HMGB3P5-201ENST00000428894 IRF6O14896 467 aa12.26□□□□□ -0.45
HMGB3P5-201ENST00000428894 SLC10A3P09131 477 aa12.26□□□□□ -0.45
HMGB3P5-201ENST00000428894 PRR14Q9BWN1 585 aa12.26□□□□□ -0.45
HMGB3P5-201ENST00000428894 DAXXQ9UER7 740 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P5-201ENST00000428894 MINK1Q8N4C8 1332 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P5-201ENST00000428894 IL21Q9HBE4 155 aa12.25□□□□□ -0.45
HMGB3P5-201ENST00000428894 A0A0G2JS52 829 aa12.24□□□□□ -0.45
HMGB3P5-201ENST00000428894 CFHP08603 1231 aa12.23□□□□□ -0.45
HMGB3P5-201ENST00000428894 KMT5BQ4FZB7 885 aa12.23□□□□□ -0.45
HMGB3P5-201ENST00000428894 RSPH4AQ5TD94 716 aa12.23□□□□□ -0.45
HMGB3P5-201ENST00000428894 COPS2P61201 443 aa12.22□□□□□ -0.45
HMGB3P5-201ENST00000428894 ZC3H15Q8WU90 426 aaKnown RBP12.21□□□□□ -0.45
HMGB3P5-201ENST00000428894 ZNF516Q92618 1163 aa12.21□□□□□ -0.45
HMGB3P5-201ENST00000428894 PCDHB3Q9Y5E6 796 aa12.21□□□□□ -0.45
HMGB3P5-201ENST00000428894 DDX11L8A8MPP1 907 aa12.2□□□□□ -0.46
HMGB3P5-201ENST00000428894 ACTN4O43707 911 aaKnown RBP12.2□□□□□ -0.46
HMGB3P5-201ENST00000428894 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
HMGB3P5-201ENST00000428894 CCDC102AQ96A19 550 aa12.2□□□□□ -0.46
HMGB3P5-201ENST00000428894 RDH13Q8NBN7 331 aa12.19□□□□□ -0.46
HMGB3P5-201ENST00000428894 BARGINQ6ZT62 677 aa12.18□□□□□ -0.46
HMGB3P5-201ENST00000428894 ZMYND10O75800 440 aa12.17□□□□□ -0.46
HMGB3P5-201ENST00000428894 BLOC1S3Q6QNY0 202 aa12.17□□□□□ -0.46
HMGB3P5-201ENST00000428894 SULF1Q8IWU6 871 aa12.16□□□□□ -0.46
HMGB3P5-201ENST00000428894 MDM2Q00987 491 aaPredicted RBP12.15□□□□□ -0.46
HMGB3P5-201ENST00000428894 ZPR1O75312 459 aa12.14□□□□□ -0.47
HMGB3P5-201ENST00000428894 NKX2-3Q8TAU0 364 aa12.14□□□□□ -0.47
HMGB3P5-201ENST00000428894 RGS20O76081 388 aa12.12□□□□□ -0.47
HMGB3P5-201ENST00000428894 GCGRP47871 477 aa12.1□□□□□ -0.47
HMGB3P5-201ENST00000428894 PUS10Q3MIT2 529 aaKnown RBP12.09□□□□□ -0.47
HMGB3P5-201ENST00000428894 BCANQ96GW7 911 aa12.09□□□□□ -0.47
HMGB3P5-201ENST00000428894 NR1I2O75469 434 aa12.08□□□□□ -0.48
HMGB3P5-201ENST00000428894 CLCN1P35523 988 aa12.08□□□□□ -0.48
HMGB3P5-201ENST00000428894 PPP1R18Q6NYC8 613 aa12.08□□□□□ -0.48
HMGB3P5-201ENST00000428894 CD46P15529 392 aa12.07□□□□□ -0.48
HMGB3P5-201ENST00000428894 GPCPD1Q9NPB8 672 aa12.07□□□□□ -0.48
HMGB3P5-201ENST00000428894 FUT2Q10981 343 aa12.06□□□□□ -0.48
HMGB3P5-201ENST00000428894 SCUBE3Q8IX30 993 aa12.06□□□□□ -0.48
HMGB3P5-201ENST00000428894 TLL1O43897 1013 aa12.05□□□□□ -0.48
HMGB3P5-201ENST00000428894 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.05□□□□□ -0.48
HMGB3P5-201ENST00000428894 ATP6V1AP38606 617 aa12.04□□□□□ -0.48
HMGB3P5-201ENST00000428894 TMUB1Q9BVT8 246 aa12.04□□□□□ -0.48
HMGB3P5-201ENST00000428894 GGCXP38435 758 aa12.03□□□□□ -0.48
HMGB3P5-201ENST00000428894 MORN1Q5T089 497 aa12.02□□□□□ -0.49
HMGB3P5-201ENST00000428894 REPIN1Q9BWE0 567 aaKnown RBP12.02□□□□□ -0.49
HMGB3P5-201ENST00000428894 FAM217BQ9NTX9 383 aaPredicted RBP12.02□□□□□ -0.49
HMGB3P5-201ENST00000428894 TTLL12Q14166 644 aaPredicted RBP12□□□□□ -0.49
HMGB3P5-201ENST00000428894 AK7Q96M32 723 aa12□□□□□ -0.49
HMGB3P5-201ENST00000428894 ADH1BP00325 375 aa11.99□□□□□ -0.49
HMGB3P5-201ENST00000428894 AMHR2Q16671 573 aa11.99□□□□□ -0.49
HMGB3P5-201ENST00000428894 GRIPAP1Q4V328 841 aa11.99□□□□□ -0.49
HMGB3P5-201ENST00000428894 TRIM66O15016 1216 aa11.98□□□□□ -0.49
HMGB3P5-201ENST00000428894 KDM4AO75164 1064 aa11.98□□□□□ -0.49
HMGB3P5-201ENST00000428894 SLC27A5Q9Y2P5 690 aa11.98□□□□□ -0.49
HMGB3P5-201ENST00000428894 SSTR3P32745 418 aaPredicted RBP11.97□□□□□ -0.49
HMGB3P5-201ENST00000428894 SPSB2Q99619 263 aa11.97□□□□□ -0.49
HMGB3P5-201ENST00000428894 S1PR4O95977 384 aa11.96□□□□□ -0.49
HMGB3P5-201ENST00000428894 PRKD2Q9BZL6 878 aa11.95□□□□□ -0.5
HMGB3P5-201ENST00000428894 SLC6A16Q9GZN6 736 aa11.95□□□□□ -0.5
HMGB3P5-201ENST00000428894 SLC24A3Q9HC58 644 aa11.95□□□□□ -0.5
HMGB3P5-201ENST00000428894 RNF223E7ERA6 249 aa11.94□□□□□ -0.5
HMGB3P5-201ENST00000428894 FMNL1O95466 1100 aaPredicted RBP11.94□□□□□ -0.5
HMGB3P5-201ENST00000428894 USP46P62068 366 aa11.94□□□□□ -0.5
HMGB3P5-201ENST00000428894 THAP11Q96EK4 314 aa11.94□□□□□ -0.5
HMGB3P5-201ENST00000428894 PPEF1O14829 653 aaPredicted RBP11.93□□□□□ -0.5
HMGB3P5-201ENST00000428894 GIGYF2Q6Y7W6 1299 aaKnown RBP11.93□□□□□ -0.5
HMGB3P5-201ENST00000428894 NUTM1Q86Y26 1132 aa11.92□□□□□ -0.5
HMGB3P5-201ENST00000428894 BRICD5Q6PL45 260 aa11.91□□□□□ -0.5
HMGB3P5-201ENST00000428894 SALL2Q9Y467 1007 aaPredicted RBP11.91□□□□□ -0.5
HMGB3P5-201ENST00000428894 RNF19BQ6ZMZ0 732 aa11.9□□□□□ -0.5
HMGB3P5-201ENST00000428894 PARP9Q8IXQ6 854 aa11.9□□□□□ -0.5
HMGB3P5-201ENST00000428894 HLA-CQ95604 372 aa11.9□□□□□ -0.5
HMGB3P5-201ENST00000428894 IRX2Q9BZI1 471 aaPredicted RBP11.9□□□□□ -0.5
HMGB3P5-201ENST00000428894 HOXA2O43364 376 aa11.89□□□□□ -0.51
HMGB3P5-201ENST00000428894 Q3C1V9 767 aa11.89□□□□□ -0.51
HMGB3P5-201ENST00000428894 ANKLE1Q8NAG6 615 aa11.89□□□□□ -0.51
HMGB3P5-201ENST00000428894 V9GY48 417 aaPredicted RBP11.89□□□□□ -0.51
HMGB3P5-201ENST00000428894 FAM160A2Q8N612 972 aaPredicted RBP11.88□□□□□ -0.51
HMGB3P5-201ENST00000428894 PDE4DQ08499 809 aa11.87□□□□□ -0.51
HMGB3P5-201ENST00000428894 GUCA2AQ02747 115 aa11.86□□□□□ -0.51
HMGB3P5-201ENST00000428894 BEGAINQ9BUH8 593 aa11.86□□□□□ -0.51
HMGB3P5-201ENST00000428894 SPIRE2Q8WWL2 714 aa11.85□□□□□ -0.51
HMGB3P5-201ENST00000428894 MS4A1P11836 297 aa11.84□□□□□ -0.51
HMGB3P5-201ENST00000428894 SLC19A1P41440 591 aa11.84□□□□□ -0.51
HMGB3P5-201ENST00000428894 EMID1Q96A84 441 aaPredicted RBP11.83□□□□□ -0.52
HMGB3P5-201ENST00000428894 MSS51Q4VC12 460 aa11.82□□□□□ -0.52
HMGB3P5-201ENST00000428894 USB1Q9BQ65 265 aaKnown RBP11.82□□□□□ -0.52
HMGB3P5-201ENST00000428894 PRDM9Q9NQV7 894 aa11.82□□□□□ -0.52
HMGB3P5-201ENST00000428894 FDX1P10109 184 aa11.81□□□□□ -0.52
HMGB3P5-201ENST00000428894 LIAT1Q6ZQX7 453 aa11.81□□□□□ -0.52
HMGB3P5-201ENST00000428894 NDUFV2P19404 249 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms