RNA–Protein interactions for RNA: ENST00000417508.1

VPS16-204, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-204ENST00000417508 TMEM131LA2VDJ0 1609 aa27.96■■■□□ 2.07
VPS16-204ENST00000417508 ZFYVE9O95405 1425 aa27.95■■■□□ 2.07
VPS16-204ENST00000417508 ALKQ9UM73 1620 aa27.95■■■□□ 2.06
VPS16-204ENST00000417508 RIMS2Q9UQ26 1411 aa27.94■■■□□ 2.06
VPS16-204ENST00000417508 PPP1R15AO75807 674 aaPredicted RBP27.94■■■□□ 2.06
VPS16-204ENST00000417508 CHGAP10645 457 aaKnown RBP27.94■■■□□ 2.06
VPS16-204ENST00000417508 PLEKHG1Q9ULL1 1385 aa27.94■■■□□ 2.06
VPS16-204ENST00000417508 MYO5BQ9ULV0 1848 aa27.94■■■□□ 2.06
VPS16-204ENST00000417508 PROSER2Q86WR7 435 aaPredicted RBP27.9■■■□□ 2.06
VPS16-204ENST00000417508 TBX22Q9Y458 520 aa27.89■■■□□ 2.06
VPS16-204ENST00000417508 XIRP1Q702N8 1843 aaKnown RBP27.88■■■□□ 2.05
VPS16-204ENST00000417508 TMEM94Q12767 1356 aa27.86■■■□□ 2.05
VPS16-204ENST00000417508 ILDR2Q71H61 639 aa27.85■■■□□ 2.05
VPS16-204ENST00000417508 NAIPQ13075 1403 aa27.84■■■□□ 2.05
VPS16-204ENST00000417508 NKTRP30414 1462 aaKnown RBP27.84■■■□□ 2.05
VPS16-204ENST00000417508 NWD1Q149M9 1564 aa27.82■■■□□ 2.04
VPS16-204ENST00000417508 CHD2O14647 1828 aaKnown RBP27.81■■■□□ 2.04
VPS16-204ENST00000417508 FAM135BQ49AJ0 1406 aa27.79■■■□□ 2.04
VPS16-204ENST00000417508 SPHKAPQ2M3C7 1700 aa27.78■■■□□ 2.04
VPS16-204ENST00000417508 PIK3R4Q99570 1358 aa27.78■■■□□ 2.04
VPS16-204ENST00000417508 HFM1A2PYH4 1435 aa27.77■■■□□ 2.04
VPS16-204ENST00000417508 NUTM2DQ5VT03 806 aaPredicted RBP27.77■■■□□ 2.04
VPS16-204ENST00000417508 SENP3Q9H4L4 574 aaPredicted RBP27.76■■■□□ 2.03
VPS16-204ENST00000417508 ADAMTS13Q76LX8 1427 aa27.75■■■□□ 2.03
VPS16-204ENST00000417508 DIP2AQ14689 1571 aa27.75■■■□□ 2.03
VPS16-204ENST00000417508 NCOA3Q9Y6Q9 1424 aa27.75■■■□□ 2.03
VPS16-204ENST00000417508 MSH6P52701 1360 aa27.74■■■□□ 2.03
VPS16-204ENST00000417508 SOCS7O14512 581 aa27.74■■■□□ 2.03
VPS16-204ENST00000417508 TRIM52Q96A61 297 aa27.73■■■□□ 2.03
VPS16-204ENST00000417508 RBM33Q96EV2 1170 aaKnown RBP27.73■■■□□ 2.03
VPS16-204ENST00000417508 ZNF326Q5BKZ1 582 aaKnown RBP27.72■■■□□ 2.03
VPS16-204ENST00000417508 MED1Q15648 1581 aaPredicted RBP27.7■■■□□ 2.03
VPS16-204ENST00000417508 SLAIN2Q9P270 581 aa27.68■■■□□ 2.02
VPS16-204ENST00000417508 TRPM2O94759 1503 aa27.67■■■□□ 2.02
VPS16-204ENST00000417508 SLC4A1APQ9BWU0 796 aaKnown RBP27.66■■■□□ 2.02
VPS16-204ENST00000417508 AMOTL2Q9Y2J4 779 aa27.65■■■□□ 2.02
VPS16-204ENST00000417508 KIF1BO60333 1816 aa27.63■■■□□ 2.01
VPS16-204ENST00000417508 C19orf44Q9H6X5 657 aa27.63■■■□□ 2.01
VPS16-204ENST00000417508 CLTCL1P53675 1640 aa27.63■■■□□ 2.01
VPS16-204ENST00000417508 C14orf37Q86TY3 774 aa27.62■■■□□ 2.01
VPS16-204ENST00000417508 SETBP1Q9Y6X0 1596 aa27.61■■■□□ 2.01
VPS16-204ENST00000417508 PHF23Q9BUL5 403 aaPredicted RBP27.61■■■□□ 2.01
VPS16-204ENST00000417508 ROBO1Q9Y6N7 1651 aa27.61■■■□□ 2.01
VPS16-204ENST00000417508 CADPS2Q86UW7 1296 aa27.6■■■□□ 2.01
VPS16-204ENST00000417508 ACIN1Q9UKV3 1341 aaKnown RBP27.6■■■□□ 2.01
VPS16-204ENST00000417508 VGFO15240 615 aaPredicted RBP27.58■■■□□ 2.01
VPS16-204ENST00000417508 RPGRIP1LQ68CZ1 1315 aa27.58■■■□□ 2.01
VPS16-204ENST00000417508 PTPRUQ92729 1446 aa27.58■■■□□ 2
VPS16-204ENST00000417508 ATF3P18847 181 aa27.57■■■□□ 2
VPS16-204ENST00000417508 NRXN3Q9Y4C0 1643 aa27.56■■■□□ 2
VPS16-204ENST00000417508 NEXMIFQ5QGS0 1516 aa27.56■■■□□ 2
VPS16-204ENST00000417508 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.52■■■□□ 2
VPS16-204ENST00000417508 METP08581 1390 aa27.51■■□□□ 1.99
VPS16-204ENST00000417508 XRN1Q8IZH2 1706 aaKnown RBP27.49■■□□□ 1.99
VPS16-204ENST00000417508 MPHOSPH9Q99550 1183 aa27.48■■□□□ 1.99
VPS16-204ENST00000417508 DCCP43146 1447 aa27.48■■□□□ 1.99
VPS16-204ENST00000417508 PHLPP1O60346 1717 aa27.46■■□□□ 1.99
VPS16-204ENST00000417508 JCADQ9P266 1359 aa27.44■■□□□ 1.98
VPS16-204ENST00000417508 FOXD1Q16676 465 aa27.43■■□□□ 1.98
VPS16-204ENST00000417508 CCDC144AA2RUR9 1427 aa27.42■■□□□ 1.98
VPS16-204ENST00000417508 RGS17Q9UGC6 210 aaPredicted RBP27.39■■□□□ 1.98
VPS16-204ENST00000417508 PPLO60437 1756 aa27.39■■□□□ 1.98
VPS16-204ENST00000417508 SETD5Q9C0A6 1442 aa27.39■■□□□ 1.97
VPS16-204ENST00000417508 BRINP3Q76B58 766 aa27.38■■□□□ 1.97
VPS16-204ENST00000417508 AHDC1Q5TGY3 1603 aaPredicted RBP27.37■■□□□ 1.97
VPS16-204ENST00000417508 ADGRL3Q9HAR2 1447 aa27.36■■□□□ 1.97
VPS16-204ENST00000417508 COL16A1Q07092 1604 aaPredicted RBP27.36■■□□□ 1.97
VPS16-204ENST00000417508 PTCH1Q13635 1447 aa27.34■■□□□ 1.97
VPS16-204ENST00000417508 SPATA31A6Q5VVP1 1343 aa27.34■■□□□ 1.97
VPS16-204ENST00000417508 ANKRD30BQ9BXX2 1392 aa27.34■■□□□ 1.97
VPS16-204ENST00000417508 MST1RQ04912 1400 aa27.33■■□□□ 1.97
VPS16-204ENST00000417508 SETD1AO15047 1707 aaKnown RBP27.33■■□□□ 1.97
VPS16-204ENST00000417508 RGL3Q3MIN7 710 aa27.33■■□□□ 1.97
VPS16-204ENST00000417508 SPATA31E1Q6ZUB1 1445 aa27.33■■□□□ 1.96
VPS16-204ENST00000417508 PRAG1Q86YV5 1406 aa27.33■■□□□ 1.96
VPS16-204ENST00000417508 ADGRF5Q8IZF2 1346 aa27.29■■□□□ 1.96
VPS16-204ENST00000417508 ROBO2Q9HCK4 1378 aa27.28■■□□□ 1.96
VPS16-204ENST00000417508 ASXL1Q8IXJ9 1541 aa27.27■■□□□ 1.96
VPS16-204ENST00000417508 NALCNQ8IZF0 1738 aa27.25■■□□□ 1.95
VPS16-204ENST00000417508 LRRC59Q96AG4 307 aaKnown RBP27.25■■□□□ 1.95
VPS16-204ENST00000417508 RAB3GAP2Q9H2M9 1393 aa27.24■■□□□ 1.95
VPS16-204ENST00000417508 POTEAQ6S8J7 498 aa27.24■■□□□ 1.95
VPS16-204ENST00000417508 SHPRHQ149N8 1683 aa27.24■■□□□ 1.95
VPS16-204ENST00000417508 HRCP23327 699 aa27.22■■□□□ 1.95
VPS16-204ENST00000417508 IFT172Q9UG01 1749 aa27.21■■□□□ 1.95
VPS16-204ENST00000417508 C1orf167Q5SNV9 1468 aa27.21■■□□□ 1.95
VPS16-204ENST00000417508 NHSL1Q5SYE7 1610 aa27.2■■□□□ 1.95
VPS16-204ENST00000417508 MEX3CQ5U5Q3 659 aaKnown RBP27.2■■□□□ 1.94
VPS16-204ENST00000417508 LRPPRCP42704 1394 aaKnown RBP27.18■■□□□ 1.94
VPS16-204ENST00000417508 ABCC11Q96J66 1382 aa27.18■■□□□ 1.94
VPS16-204ENST00000417508 TECPR2O15040 1411 aa27.16■■□□□ 1.94
VPS16-204ENST00000417508 PIK3C2GO75747 1445 aa27.16■■□□□ 1.94
VPS16-204ENST00000417508 ZNF772Q68DY9 489 aaPredicted RBP27.16■■□□□ 1.94
VPS16-204ENST00000417508 SIRT1Q96EB6 747 aa27.15■■□□□ 1.94
VPS16-204ENST00000417508 C14orf93Q9H972 538 aaKnown RBP27.15■■□□□ 1.94
VPS16-204ENST00000417508 STK26Q9P289 416 aa27.15■■□□□ 1.94
VPS16-204ENST00000417508 LRP6O75581 1613 aa27.15■■□□□ 1.94
VPS16-204ENST00000417508 TMEM132EQ6IEE7 984 aa27.13■■□□□ 1.93
VPS16-204ENST00000417508 ORAI2Q96SN7 254 aa27.13■■□□□ 1.93
VPS16-204ENST00000417508 DDX17Q92841 729 aaKnown RBP27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms