RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 RBM33Q96EV2 1170 aaKnown RBP22.79■■□□□ 1.24
RPS28-201ENST00000417088 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
RPS28-201ENST00000417088 FAM135BQ49AJ0 1406 aa22.78■■□□□ 1.24
RPS28-201ENST00000417088 GCC2Q8IWJ2 1684 aa22.77■■□□□ 1.24
RPS28-201ENST00000417088 PLEKHG1Q9ULL1 1385 aa22.77■■□□□ 1.24
RPS28-201ENST00000417088 RIMS2Q9UQ26 1411 aa22.77■■□□□ 1.24
RPS28-201ENST00000417088 TMEM131LA2VDJ0 1609 aa22.76■■□□□ 1.23
RPS28-201ENST00000417088 HDGFP51858 240 aaKnown RBP22.76■■□□□ 1.23
RPS28-201ENST00000417088 NWD1Q149M9 1564 aa22.76■■□□□ 1.23
RPS28-201ENST00000417088 MYO5BQ9ULV0 1848 aa22.75■■□□□ 1.23
RPS28-201ENST00000417088 NKTRP30414 1462 aaKnown RBP22.75■■□□□ 1.23
RPS28-201ENST00000417088 PPP1R15AO75807 674 aaPredicted RBP22.75■■□□□ 1.23
RPS28-201ENST00000417088 CHGAP10645 457 aaKnown RBP22.74■■□□□ 1.23
RPS28-201ENST00000417088 ITGAEP38570 1179 aa22.74■■□□□ 1.23
RPS28-201ENST00000417088 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
RPS28-201ENST00000417088 E9PCH4 1651 aa22.74■■□□□ 1.23
RPS28-201ENST00000417088 NUP155O75694 1391 aa22.72■■□□□ 1.23
RPS28-201ENST00000417088 IQGAP3Q86VI3 1631 aa22.71■■□□□ 1.23
RPS28-201ENST00000417088 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.71■■□□□ 1.23
RPS28-201ENST00000417088 TBX22Q9Y458 520 aa22.71■■□□□ 1.23
RPS28-201ENST00000417088 MSH6P52701 1360 aa22.68■■□□□ 1.22
RPS28-201ENST00000417088 NUTM2DQ5VT03 806 aaPredicted RBP22.68■■□□□ 1.22
RPS28-201ENST00000417088 CHD2O14647 1828 aaKnown RBP22.68■■□□□ 1.22
RPS28-201ENST00000417088 ROBO1Q9Y6N7 1651 aa22.66■■□□□ 1.22
RPS28-201ENST00000417088 ADAMTS13Q76LX8 1427 aa22.65■■□□□ 1.22
RPS28-201ENST00000417088 SLAIN2Q9P270 581 aa22.65■■□□□ 1.22
RPS28-201ENST00000417088 RGS17Q9UGC6 210 aaPredicted RBP22.65■■□□□ 1.22
RPS28-201ENST00000417088 NCOA3Q9Y6Q9 1424 aa22.61■■□□□ 1.21
RPS28-201ENST00000417088 PIK3R4Q99570 1358 aa22.6■■□□□ 1.21
RPS28-201ENST00000417088 DIP2AQ14689 1571 aa22.59■■□□□ 1.21
RPS28-201ENST00000417088 C14orf37Q86TY3 774 aa22.56■■□□□ 1.2
RPS28-201ENST00000417088 AMOTL2Q9Y2J4 779 aa22.55■■□□□ 1.2
RPS28-201ENST00000417088 PTPRUQ92729 1446 aa22.55■■□□□ 1.2
RPS28-201ENST00000417088 C19orf44Q9H6X5 657 aa22.54■■□□□ 1.2
RPS28-201ENST00000417088 RRBP1Q9P2E9 1410 aaKnown RBP22.54■■□□□ 1.2
RPS28-201ENST00000417088 TRPM2O94759 1503 aa22.53■■□□□ 1.2
RPS28-201ENST00000417088 SPHKAPQ2M3C7 1700 aa22.53■■□□□ 1.2
RPS28-201ENST00000417088 PHLPP1O60346 1717 aa22.52■■□□□ 1.2
RPS28-201ENST00000417088 CADPS2Q86UW7 1296 aa22.52■■□□□ 1.2
RPS28-201ENST00000417088 JCADQ9P266 1359 aa22.51■■□□□ 1.19
RPS28-201ENST00000417088 ZNF326Q5BKZ1 582 aaKnown RBP22.51■■□□□ 1.19
RPS28-201ENST00000417088 POTEAQ6S8J7 498 aa22.51■■□□□ 1.19
RPS28-201ENST00000417088 ATF3P18847 181 aa22.5■■□□□ 1.19
RPS28-201ENST00000417088 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.5■■□□□ 1.19
RPS28-201ENST00000417088 NAIPQ13075 1403 aa22.49■■□□□ 1.19
RPS28-201ENST00000417088 NRXN3Q9Y4C0 1643 aa22.49■■□□□ 1.19
RPS28-201ENST00000417088 SETBP1Q9Y6X0 1596 aa22.48■■□□□ 1.19
RPS28-201ENST00000417088 COL16A1Q07092 1604 aaPredicted RBP22.47■■□□□ 1.19
RPS28-201ENST00000417088 METP08581 1390 aa22.45■■□□□ 1.18
RPS28-201ENST00000417088 CLTCL1P53675 1640 aa22.45■■□□□ 1.18
RPS28-201ENST00000417088 XRN1Q8IZH2 1706 aaKnown RBP22.43■■□□□ 1.18
RPS28-201ENST00000417088 AHDC1Q5TGY3 1603 aaPredicted RBP22.42■■□□□ 1.18
RPS28-201ENST00000417088 BRINP3Q76B58 766 aa22.42■■□□□ 1.18
RPS28-201ENST00000417088 NEXMIFQ5QGS0 1516 aa22.41■■□□□ 1.18
RPS28-201ENST00000417088 DCCP43146 1447 aa22.41■■□□□ 1.18
RPS28-201ENST00000417088 SPATA31A6Q5VVP1 1343 aa22.4■■□□□ 1.18
RPS28-201ENST00000417088 TRIM52Q96A61 297 aa22.4■■□□□ 1.18
RPS28-201ENST00000417088 HFM1A2PYH4 1435 aa22.4■■□□□ 1.18
RPS28-201ENST00000417088 LRP6O75581 1613 aa22.38■■□□□ 1.17
RPS28-201ENST00000417088 MST1RQ04912 1400 aa22.36■■□□□ 1.17
RPS28-201ENST00000417088 KIF1BO60333 1816 aa22.36■■□□□ 1.17
RPS28-201ENST00000417088 SLC4A1APQ9BWU0 796 aaKnown RBP22.35■■□□□ 1.17
RPS28-201ENST00000417088 SHPRHQ149N8 1683 aa22.33■■□□□ 1.17
RPS28-201ENST00000417088 ADGRL3Q9HAR2 1447 aa22.33■■□□□ 1.17
RPS28-201ENST00000417088 ASXL1Q8IXJ9 1541 aa22.33■■□□□ 1.17
RPS28-201ENST00000417088 VGFO15240 615 aaPredicted RBP22.33■■□□□ 1.17
RPS28-201ENST00000417088 MEX3CQ5U5Q3 659 aaKnown RBP22.33■■□□□ 1.17
RPS28-201ENST00000417088 RPGRIP1LQ68CZ1 1315 aa22.3■■□□□ 1.16
RPS28-201ENST00000417088 SETD5Q9C0A6 1442 aa22.29■■□□□ 1.16
RPS28-201ENST00000417088 NUTM2BA6NNL0 878 aaPredicted RBP22.28■■□□□ 1.16
RPS28-201ENST00000417088 NUTM2EB1AL46 878 aaPredicted RBP22.28■■□□□ 1.16
RPS28-201ENST00000417088 ZNF772Q68DY9 489 aaPredicted RBP22.28■■□□□ 1.16
RPS28-201ENST00000417088 NUTM2AQ8IVF1 878 aaPredicted RBP22.28■■□□□ 1.16
RPS28-201ENST00000417088 NALCNQ8IZF0 1738 aa22.27■■□□□ 1.16
RPS28-201ENST00000417088 DDX17Q92841 729 aaKnown RBP22.27■■□□□ 1.16
RPS28-201ENST00000417088 ROBO2Q9HCK4 1378 aa22.26■■□□□ 1.15
RPS28-201ENST00000417088 PTCH1Q13635 1447 aa22.26■■□□□ 1.15
RPS28-201ENST00000417088 FOXD1Q16676 465 aa22.26■■□□□ 1.15
RPS28-201ENST00000417088 LRRC59Q96AG4 307 aaKnown RBP22.26■■□□□ 1.15
RPS28-201ENST00000417088 NHSL1Q5SYE7 1610 aa22.26■■□□□ 1.15
RPS28-201ENST00000417088 SETD1AO15047 1707 aaKnown RBP22.26■■□□□ 1.15
RPS28-201ENST00000417088 C1orf167Q5SNV9 1468 aa22.23■■□□□ 1.15
RPS28-201ENST00000417088 PRAG1Q86YV5 1406 aa22.23■■□□□ 1.15
RPS28-201ENST00000417088 PPLO60437 1756 aa22.21■■□□□ 1.15
RPS28-201ENST00000417088 PNPLA6Q8IY17 1366 aa22.2■■□□□ 1.14
RPS28-201ENST00000417088 ORAI2Q96SN7 254 aa22.19■■□□□ 1.14
RPS28-201ENST00000417088 AFF2P51816 1311 aa22.18■■□□□ 1.14
RPS28-201ENST00000417088 ADGRF5Q8IZF2 1346 aa22.18■■□□□ 1.14
RPS28-201ENST00000417088 RXRBP28702 533 aa22.18■■□□□ 1.14
RPS28-201ENST00000417088 MPHOSPH9Q99550 1183 aa22.18■■□□□ 1.14
RPS28-201ENST00000417088 CCDC144AA2RUR9 1427 aa22.17■■□□□ 1.14
RPS28-201ENST00000417088 RGL3Q3MIN7 710 aa22.16■■□□□ 1.14
RPS28-201ENST00000417088 SPATA31E1Q6ZUB1 1445 aa22.14■■□□□ 1.14
RPS28-201ENST00000417088 LAMC1P11047 1609 aa22.14■■□□□ 1.14
RPS28-201ENST00000417088 SOS2Q07890 1332 aaPredicted RBP22.14■■□□□ 1.14
RPS28-201ENST00000417088 C8orf37Q96NL8 207 aa22.13■■□□□ 1.13
RPS28-201ENST00000417088 ANKRD30BQ9BXX2 1392 aa22.12■■□□□ 1.13
RPS28-201ENST00000417088 UPF1Q92900 1129 aaKnown RBP eCLIP22.11■■□□□ 1.13
RPS28-201ENST00000417088 CDK12Q9NYV4 1490 aaPredicted RBP22.1■■□□□ 1.13
RPS28-201ENST00000417088 STK26Q9P289 416 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms