RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 STRCP1A6NGW2 1772 aa21.03■□□□□ 0.96
USP4-203ENST00000415188 GTF3C3Q9Y5Q9 886 aa21.02■□□□□ 0.96
USP4-203ENST00000415188 EID1Q9Y6B2 187 aa21.02■□□□□ 0.96
USP4-203ENST00000415188 PIP4K2BP78356 416 aa21.01■□□□□ 0.95
USP4-203ENST00000415188 YTHDC1Q96MU7 727 aaKnown RBP21.01■□□□□ 0.95
USP4-203ENST00000415188 DISP3Q9P2K9 1392 aa21■□□□□ 0.95
USP4-203ENST00000415188 UNC13BO14795 1591 aa21■□□□□ 0.95
USP4-203ENST00000415188 TET3O43151 1660 aa20.99■□□□□ 0.95
USP4-203ENST00000415188 LRRC7Q96NW7 1537 aa20.99■□□□□ 0.95
USP4-203ENST00000415188 KDM5AP29375 1690 aaKnown RBP20.98■□□□□ 0.95
USP4-203ENST00000415188 RPRD2Q5VT52 1461 aaKnown RBP20.98■□□□□ 0.95
USP4-203ENST00000415188 ADGRB3O60242 1522 aa20.98■□□□□ 0.95
USP4-203ENST00000415188 TOM1O60784 492 aa20.98■□□□□ 0.95
USP4-203ENST00000415188 SLC52A1Q9NWF4 448 aa20.97■□□□□ 0.95
USP4-203ENST00000415188 ALKQ9UM73 1620 aa20.95■□□□□ 0.94
USP4-203ENST00000415188 HSPA1LP34931 641 aa20.93■□□□□ 0.94
USP4-203ENST00000415188 SLC26A8Q96RN1 970 aa20.92■□□□□ 0.94
USP4-203ENST00000415188 E9PCH4 1651 aa20.92■□□□□ 0.94
USP4-203ENST00000415188 IQGAP3Q86VI3 1631 aa20.92■□□□□ 0.94
USP4-203ENST00000415188 NUP155O75694 1391 aa20.91■□□□□ 0.94
USP4-203ENST00000415188 SENP3Q9H4L4 574 aaPredicted RBP20.91■□□□□ 0.94
USP4-203ENST00000415188 ILDR2Q71H61 639 aa20.89■□□□□ 0.94
USP4-203ENST00000415188 PELP1Q8IZL8 1130 aaKnown RBP20.89■□□□□ 0.94
USP4-203ENST00000415188 MYO5BQ9ULV0 1848 aa20.88■□□□□ 0.93
USP4-203ENST00000415188 TRIM52Q96A61 297 aa20.88■□□□□ 0.93
USP4-203ENST00000415188 ZFYVE9O95405 1425 aa20.87■□□□□ 0.93
USP4-203ENST00000415188 TMEM131LA2VDJ0 1609 aa20.87■□□□□ 0.93
USP4-203ENST00000415188 RIMS2Q9UQ26 1411 aa20.87■□□□□ 0.93
USP4-203ENST00000415188 CHGAP10645 457 aaKnown RBP20.87■□□□□ 0.93
USP4-203ENST00000415188 MPHOSPH9Q99550 1183 aa20.87■□□□□ 0.93
USP4-203ENST00000415188 BCANQ96GW7 911 aa20.86■□□□□ 0.93
USP4-203ENST00000415188 XIRP1Q702N8 1843 aaKnown RBP20.85■□□□□ 0.93
USP4-203ENST00000415188 KCNA6P17658 529 aa20.84■□□□□ 0.93
USP4-203ENST00000415188 RBM33Q96EV2 1170 aaKnown RBP20.82■□□□□ 0.92
USP4-203ENST00000415188 TMEM94Q12767 1356 aa20.82■□□□□ 0.92
USP4-203ENST00000415188 PLEKHG1Q9ULL1 1385 aa20.82■□□□□ 0.92
USP4-203ENST00000415188 NUTM2DQ5VT03 806 aaPredicted RBP20.81■□□□□ 0.92
USP4-203ENST00000415188 ANKRD30BQ9BXX2 1392 aa20.81■□□□□ 0.92
USP4-203ENST00000415188 HDGFP51858 240 aaKnown RBP20.79■□□□□ 0.92
USP4-203ENST00000415188 DDX10Q13206 875 aaKnown RBP20.79■□□□□ 0.92
USP4-203ENST00000415188 PROSER2Q86WR7 435 aaPredicted RBP20.79■□□□□ 0.92
USP4-203ENST00000415188 NWD1Q149M9 1564 aa20.78■□□□□ 0.92
USP4-203ENST00000415188 CCER2I3L3R5 266 aa20.77■□□□□ 0.92
USP4-203ENST00000415188 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.76■□□□□ 0.91
USP4-203ENST00000415188 NKTRP30414 1462 aaKnown RBP20.76■□□□□ 0.91
USP4-203ENST00000415188 MED1Q15648 1581 aaPredicted RBP20.75■□□□□ 0.91
USP4-203ENST00000415188 ADAMTS13Q76LX8 1427 aa20.74■□□□□ 0.91
USP4-203ENST00000415188 SPHKAPQ2M3C7 1700 aa20.73■□□□□ 0.91
USP4-203ENST00000415188 TBX22Q9Y458 520 aa20.73■□□□□ 0.91
USP4-203ENST00000415188 CHD2O14647 1828 aaKnown RBP20.71■□□□□ 0.91
USP4-203ENST00000415188 ANP32CO43423 234 aa20.7■□□□□ 0.9
USP4-203ENST00000415188 SLC4A1APQ9BWU0 796 aaKnown RBP20.69■□□□□ 0.9
USP4-203ENST00000415188 FAM135BQ49AJ0 1406 aa20.68■□□□□ 0.9
USP4-203ENST00000415188 SOCS7O14512 581 aa20.68■□□□□ 0.9
USP4-203ENST00000415188 MSH6P52701 1360 aa20.67■□□□□ 0.9
USP4-203ENST00000415188 ZNF326Q5BKZ1 582 aaKnown RBP20.67■□□□□ 0.9
USP4-203ENST00000415188 CLTCL1P53675 1640 aa20.67■□□□□ 0.9
USP4-203ENST00000415188 DIP2AQ14689 1571 aa20.66■□□□□ 0.9
USP4-203ENST00000415188 EIF4G2P78344 907 aaKnown RBP eCLIP20.66■□□□□ 0.9
USP4-203ENST00000415188 L3MBTL2Q969R5 705 aa20.66■□□□□ 0.9
USP4-203ENST00000415188 TRPM2O94759 1503 aa20.65■□□□□ 0.9
USP4-203ENST00000415188 PTPRUQ92729 1446 aa20.63■□□□□ 0.89
USP4-203ENST00000415188 ROBO1Q9Y6N7 1651 aa20.63■□□□□ 0.89
USP4-203ENST00000415188 PIK3R4Q99570 1358 aa20.63■□□□□ 0.89
USP4-203ENST00000415188 NRXN3Q9Y4C0 1643 aa20.62■□□□□ 0.89
USP4-203ENST00000415188 HSPA5P11021 654 aaKnown RBP20.62■□□□□ 0.89
USP4-203ENST00000415188 HIRIP3Q9BW71 556 aaPredicted RBP20.62■□□□□ 0.89
USP4-203ENST00000415188 C14orf37Q86TY3 774 aa20.61■□□□□ 0.89
USP4-203ENST00000415188 SLAIN2Q9P270 581 aa20.61■□□□□ 0.89
USP4-203ENST00000415188 AMOTL2Q9Y2J4 779 aa20.61■□□□□ 0.89
USP4-203ENST00000415188 SETBP1Q9Y6X0 1596 aa20.6■□□□□ 0.89
USP4-203ENST00000415188 PHF23Q9BUL5 403 aaPredicted RBP20.6■□□□□ 0.89
USP4-203ENST00000415188 NEXMIFQ5QGS0 1516 aa20.6■□□□□ 0.89
USP4-203ENST00000415188 FOXD1Q16676 465 aa20.59■□□□□ 0.89
USP4-203ENST00000415188 NCOA3Q9Y6Q9 1424 aa20.59■□□□□ 0.89
USP4-203ENST00000415188 METP08581 1390 aa20.58■□□□□ 0.88
USP4-203ENST00000415188 KIF1BO60333 1816 aa20.56■□□□□ 0.88
USP4-203ENST00000415188 C19orf44Q9H6X5 657 aa20.55■□□□□ 0.88
USP4-203ENST00000415188 WASHC2AQ641Q2 1341 aa20.55■□□□□ 0.88
USP4-203ENST00000415188 XRN1Q8IZH2 1706 aaKnown RBP20.54■□□□□ 0.88
USP4-203ENST00000415188 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.54■□□□□ 0.88
USP4-203ENST00000415188 SPATA31E1Q6ZUB1 1445 aa20.53■□□□□ 0.88
USP4-203ENST00000415188 ATF3P18847 181 aa20.52■□□□□ 0.88
USP4-203ENST00000415188 CADPS2Q86UW7 1296 aa20.52■□□□□ 0.88
USP4-203ENST00000415188 CCDC7Q96M83 1385 aa20.52■□□□□ 0.88
USP4-203ENST00000415188 NBPF8Q3BBV2 869 aa20.5■□□□□ 0.87
USP4-203ENST00000415188 PHLPP1O60346 1717 aa20.5■□□□□ 0.87
USP4-203ENST00000415188 RGS17Q9UGC6 210 aaPredicted RBP20.5■□□□□ 0.87
USP4-203ENST00000415188 VGFO15240 615 aaPredicted RBP20.47■□□□□ 0.87
USP4-203ENST00000415188 RPGRIP1LQ68CZ1 1315 aa20.46■□□□□ 0.87
USP4-203ENST00000415188 RALGAPBQ86X10 1494 aa20.46■□□□□ 0.87
USP4-203ENST00000415188 COL16A1Q07092 1604 aaPredicted RBP20.46■□□□□ 0.87
USP4-203ENST00000415188 BRINP3Q76B58 766 aa20.44■□□□□ 0.86
USP4-203ENST00000415188 SUPT16HQ9Y5B9 1047 aaKnown RBP20.44■□□□□ 0.86
USP4-203ENST00000415188 DCCP43146 1447 aa20.44■□□□□ 0.86
USP4-203ENST00000415188 JCADQ9P266 1359 aa20.44■□□□□ 0.86
USP4-203ENST00000415188 SETD1AO15047 1707 aaKnown RBP20.44■□□□□ 0.86
USP4-203ENST00000415188 CCDC144AA2RUR9 1427 aa20.43■□□□□ 0.86
USP4-203ENST00000415188 PPLO60437 1756 aa20.43■□□□□ 0.86
USP4-203ENST00000415188 MST1RQ04912 1400 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms