RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CCDC7Q96M83 1385 aa7.41□□□□□ -1.22
SCN1A-203ENST00000409050 CCDC173Q0VFZ6 552 aa7.41□□□□□ -1.22
SCN1A-203ENST00000409050 DHX57Q6P158 1386 aaKnown RBP7.41□□□□□ -1.22
SCN1A-203ENST00000409050 CADPSQ9ULU8 1353 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 PDCP20941 246 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 GNAI1P63096 354 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 HSP90B2PQ58FF3 399 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 PSMA5P28066 241 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 AMPHP49418 695 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 SAFBQ15424 915 aaKnown RBP eCLIP7.4□□□□□ -1.22
SCN1A-203ENST00000409050 GZF1Q9H116 711 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-203ENST00000409050 PLEKHG5O94827 1062 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 COG3Q96JB2 828 aa7.4□□□□□ -1.22
SCN1A-203ENST00000409050 TRDNQ13061 729 aa7.4□□□□□ -1.23
SCN1A-203ENST00000409050 CCDC73Q6ZRK6 1079 aa7.4□□□□□ -1.23
SCN1A-203ENST00000409050 RUFY1Q96T51 708 aa7.4□□□□□ -1.23
SCN1A-203ENST00000409050 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-203ENST00000409050 TULP1O00294 542 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-203ENST00000409050 SASS6Q6UVJ0 657 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 XBP1P17861 261 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 FAM43AQ8N2R8 423 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 C1orf141Q5JVX7 400 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 RRP12Q5JTH9 1297 aaKnown RBP7.39□□□□□ -1.23
SCN1A-203ENST00000409050 DZIP1LQ8IYY4 767 aaKnown RBP7.39□□□□□ -1.23
SCN1A-203ENST00000409050 SPRYD3Q8NCJ5 442 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 RUNDC1Q96C34 613 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 BRMS1Q9HCU9 246 aa7.39□□□□□ -1.23
SCN1A-203ENST00000409050 USP47Q96K76 1375 aa7.38□□□□□ -1.23
SCN1A-203ENST00000409050 GGT6Q6P531 493 aa7.38□□□□□ -1.23
SCN1A-203ENST00000409050 CWC22Q9HCG8 908 aaKnown RBP7.38□□□□□ -1.23
SCN1A-203ENST00000409050 CPLX1O14810 134 aa7.38□□□□□ -1.23
SCN1A-203ENST00000409050 ZNF771Q7L3S4 317 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-203ENST00000409050 MNS1Q8NEH6 495 aa7.38□□□□□ -1.23
SCN1A-203ENST00000409050 NGDNQ8NEJ9 315 aaKnown RBP7.38□□□□□ -1.23
SCN1A-203ENST00000409050 ZNF428Q96B54 188 aa7.38□□□□□ -1.23
SCN1A-203ENST00000409050 CDC45O75419 566 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 CECR2Q9BXF3 1484 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 ERICH2A1L162 156 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 G3V3G9 751 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 DCAF8Q5TAQ9 597 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 LUC7LQ9NQ29 371 aaKnown RBP7.37□□□□□ -1.23
SCN1A-203ENST00000409050 KIF3BO15066 747 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 CCDC191Q8NCU4 936 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 CIZ1Q9ULV3 898 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-203ENST00000409050 SMC3Q9UQE7 1217 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 ANKRD45Q5TZF3 282 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 TAF3Q5VWG9 929 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 PDCL2Q8N4E4 241 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 IFIT2P09913 472 aaKnown RBP7.37□□□□□ -1.23
SCN1A-203ENST00000409050 KANK4Q5T7N3 995 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-203ENST00000409050 OLFM4Q6UX06 510 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 CAGE1Q8TC20 777 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 MROH2BQ7Z745 1585 aa7.37□□□□□ -1.23
SCN1A-203ENST00000409050 DHX16O60231 1041 aaKnown RBP7.36□□□□□ -1.23
SCN1A-203ENST00000409050 DIAPH1O60610 1272 aaKnown RBP7.36□□□□□ -1.23
SCN1A-203ENST00000409050 SMARCE1Q969G3 411 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 TEFQ10587 303 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 ERC1Q8IUD2 1116 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 HFM1A2PYH4 1435 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 APBB1O00213 710 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 PDE3AQ14432 1141 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 RABEP1Q15276 862 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 SLC4A10Q6U841 1118 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 DACH1Q9UI36 760 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 CHMP3Q9Y3E7 222 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 USP8P40818 1118 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 ZRSR2Q15696 482 aaKnown RBP7.36□□□□□ -1.23
SCN1A-203ENST00000409050 HOMER1Q86YM7 354 aa7.36□□□□□ -1.23
SCN1A-203ENST00000409050 GNAI3P08754 354 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 G3BP1Q13283 466 aaKnown RBP eCLIP7.35□□□□□ -1.23
SCN1A-203ENST00000409050 GCC1Q96CN9 775 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 SENP3Q9H4L4 574 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-203ENST00000409050 RRBP1Q9P2E9 1410 aaKnown RBP7.35□□□□□ -1.23
SCN1A-203ENST00000409050 AEBP1Q8IUX7 1158 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 JMYQ8N9B5 988 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 PANK3Q9H999 370 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 STK26Q9P289 416 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 FYCO1Q9BQS8 1478 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 ANKRD1Q15327 319 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 TTC5Q8N0Z6 440 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 BICD2Q8TD16 824 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 PLEKHH2Q8IVE3 1493 aa7.35□□□□□ -1.23
SCN1A-203ENST00000409050 KIF2AO00139 706 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-203ENST00000409050 PAK3O75914 559 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-203ENST00000409050 FILIP1LQ4L180 1135 aa7.34□□□□□ -1.23
SCN1A-203ENST00000409050 ZNF396Q96N95 335 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-203ENST00000409050 TOMM22Q9NS69 142 aa7.34□□□□□ -1.23
SCN1A-203ENST00000409050 FRAT2O75474 233 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-203ENST00000409050 TCEAL9Q9UHQ7 104 aa7.34□□□□□ -1.23
SCN1A-203ENST00000409050 RILPL2Q969X0 211 aa7.34□□□□□ -1.24
SCN1A-203ENST00000409050 ERLIN2O94905 339 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 SART3Q15020 963 aaKnown RBP7.33□□□□□ -1.24
SCN1A-203ENST00000409050 IQCEQ6IPM2 695 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 ANKRD18AQ8IVF6 992 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 CLUAP1Q96AJ1 413 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 ANO2Q9NQ90 1003 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 C9orf78Q9NZ63 289 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-203ENST00000409050 GTF2E1P29083 439 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-203ENST00000409050 C22orf23Q9BZE7 217 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 GOLGA6L7A0A1B0GV03 622 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms