RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, human

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-205	ENST00000399494	ZFYVE9	O95405	1425 aa		43.84	■■■■■ 4.61
HMGB1-205	ENST00000399494	HDGF	P51858	240 aa	Known RBP	43.81	■■■■■ 4.6
HMGB1-205	ENST00000399494	RIMS2	Q9UQ26	1411 aa		43.79	■■■■■ 4.6
HMGB1-205	ENST00000399494	UNC13B	O14795	1591 aa		43.79	■■■■■ 4.6
HMGB1-205	ENST00000399494	NWD1	Q149M9	1564 aa		43.79	■■■■■ 4.6
HMGB1-205	ENST00000399494	PLEKHG1	Q9ULL1	1385 aa		43.79	■■■■■ 4.6
HMGB1-205	ENST00000399494	NKTR	P30414	1462 aa	Known RBP	43.78	■■■■■ 4.6
HMGB1-205	ENST00000399494	ROCK1	Q13464	1354 aa		43.78	■■■■■ 4.6
HMGB1-205	ENST00000399494	MYO5B	Q9ULV0	1848 aa		43.77	■■■■■ 4.6
HMGB1-205	ENST00000399494	TMEM131L	A2VDJ0	1609 aa		43.77	■■■■■ 4.6
HMGB1-205	ENST00000399494	GCC2	Q8IWJ2	1684 aa		43.76	■■■■■ 4.6
HMGB1-205	ENST00000399494	PPP1R15A	O75807	674 aa	Predicted RBP	43.74	■■■■■ 4.59
HMGB1-205	ENST00000399494	RGS17	Q9UGC6	210 aa	Predicted RBP	43.73	■■■■■ 4.59
HMGB1-205	ENST00000399494	CHGA	P10645	457 aa	Known RBP	43.7	■■■■■ 4.59
HMGB1-205	ENST00000399494	TBX22	Q9Y458	520 aa		43.7	■■■■■ 4.59
HMGB1-205	ENST00000399494	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	43.69	■■■■■ 4.58
HMGB1-205	ENST00000399494		E9PCH4	1651 aa		43.68	■■■■■ 4.58
HMGB1-205	ENST00000399494	ROBO1	Q9Y6N7	1651 aa		43.68	■■■■■ 4.58
HMGB1-205	ENST00000399494	MSH6	P52701	1360 aa		43.67	■■■■■ 4.58
HMGB1-205	ENST00000399494	CHD2	O14647	1828 aa	Known RBP	43.67	■■■■■ 4.58
HMGB1-205	ENST00000399494	SLAIN2	Q9P270	581 aa		43.65	■■■■■ 4.58
HMGB1-205	ENST00000399494	IQGAP3	Q86VI3	1631 aa		43.62	■■■■■ 4.57
HMGB1-205	ENST00000399494	NUTM2D	Q5VT03	806 aa	Predicted RBP	43.61	■■■■■ 4.57
HMGB1-205	ENST00000399494	NUP155	O75694	1391 aa		43.61	■■■■■ 4.57
HMGB1-205	ENST00000399494	ITGAE	P38570	1179 aa		43.6	■■■■■ 4.57
HMGB1-205	ENST00000399494	ADAMTS13	Q76LX8	1427 aa		43.56	■■■■■ 4.56
HMGB1-205	ENST00000399494	PPARGC1B	Q86YN6	1023 aa	Known RBP	43.54	■■■■■ 4.56
HMGB1-205	ENST00000399494	NCOA3	Q9Y6Q9	1424 aa		43.53	■■■■■ 4.56
HMGB1-205	ENST00000399494	PIK3R4	Q99570	1358 aa		43.47	■■■■■ 4.55
HMGB1-205	ENST00000399494	POTEA	Q6S8J7	498 aa		43.45	■■■■■ 4.55
HMGB1-205	ENST00000399494	DIP2A	Q14689	1571 aa		43.45	■■■■■ 4.55
HMGB1-205	ENST00000399494	C14orf37	Q86TY3	774 aa		43.42	■■■■■ 4.54
HMGB1-205	ENST00000399494	PHLPP1	O60346	1717 aa		43.42	■■■■■ 4.54
HMGB1-205	ENST00000399494	C19orf44	Q9H6X5	657 aa		43.41	■■■■■ 4.54
HMGB1-205	ENST00000399494	AMOTL2	Q9Y2J4	779 aa		43.39	■■■■■ 4.54
HMGB1-205	ENST00000399494	JCAD	Q9P266	1359 aa		43.38	■■■■■ 4.53
HMGB1-205	ENST00000399494	CADPS2	Q86UW7	1296 aa		43.36	■■■■■ 4.53
HMGB1-205	ENST00000399494	PTPRU	Q92729	1446 aa		43.36	■■■■■ 4.53
HMGB1-205	ENST00000399494	TRPM2	O94759	1503 aa		43.34	■■■■■ 4.53
HMGB1-205	ENST00000399494	ATF3	P18847	181 aa		43.33	■■■■■ 4.53
HMGB1-205	ENST00000399494	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	43.33	■■■■■ 4.53
HMGB1-205	ENST00000399494	COL16A1	Q07092	1604 aa	Predicted RBP	43.29	■■■■■ 4.52
HMGB1-205	ENST00000399494	SPHKAP	Q2M3C7	1700 aa		43.27	■■■■■ 4.52
HMGB1-205	ENST00000399494	ZNF326	Q5BKZ1	582 aa	Known RBP	43.25	■■■■■ 4.51
HMGB1-205	ENST00000399494	NRXN3	Q9Y4C0	1643 aa		43.22	■■■■■ 4.51
HMGB1-205	ENST00000399494	SETBP1	Q9Y6X0	1596 aa		43.21	■■■■■ 4.51
HMGB1-205	ENST00000399494	AHDC1	Q5TGY3	1603 aa	Predicted RBP	43.18	■■■■■ 4.5
HMGB1-205	ENST00000399494	SPATA31A6	Q5VVP1	1343 aa		43.18	■■■■■ 4.5
HMGB1-205	ENST00000399494	RRBP1	Q9P2E9	1410 aa	Known RBP	43.17	■■■■■ 4.5
HMGB1-205	ENST00000399494	BRINP3	Q76B58	766 aa		43.17	■■■■■ 4.5
HMGB1-205	ENST00000399494	MET	P08581	1390 aa		43.16	■■■■■ 4.5
HMGB1-205	ENST00000399494	XRN1	Q8IZH2	1706 aa	Known RBP	43.14	■■■■■ 4.5
HMGB1-205	ENST00000399494	NAIP	Q13075	1403 aa		43.14	■■■■■ 4.5
HMGB1-205	ENST00000399494	DCC	P43146	1447 aa		43.13	■■■■■ 4.49
HMGB1-205	ENST00000399494	LRP6	O75581	1613 aa		43.11	■■■■■ 4.49
HMGB1-205	ENST00000399494	CLTCL1	P53675	1640 aa		43.11	■■■■■ 4.49
HMGB1-205	ENST00000399494	NEXMIF	Q5QGS0	1516 aa		43.07	■■■■■ 4.48
HMGB1-205	ENST00000399494	MEX3C	Q5U5Q3	659 aa	Known RBP	43.04	■■■■■ 4.48
HMGB1-205	ENST00000399494	SHPRH	Q149N8	1683 aa		43.04	■■■■■ 4.48
HMGB1-205	ENST00000399494	MST1R	Q04912	1400 aa		43.03	■■■■■ 4.48
HMGB1-205	ENST00000399494	ZNF772	Q68DY9	489 aa	Predicted RBP	42.99	■■■■■ 4.47
HMGB1-205	ENST00000399494	ASXL1	Q8IXJ9	1541 aa		42.98	■■■■■ 4.47
HMGB1-205	ENST00000399494	TRIM52	Q96A61	297 aa		42.97	■■■■■ 4.47
HMGB1-205	ENST00000399494	KIF1B	O60333	1816 aa		42.97	■■■■■ 4.47
HMGB1-205	ENST00000399494	ADGRL3	Q9HAR2	1447 aa		42.95	■■■■■ 4.47
HMGB1-205	ENST00000399494	VGF	O15240	615 aa	Predicted RBP	42.94	■■■■■ 4.46
HMGB1-205	ENST00000399494	SETD5	Q9C0A6	1442 aa		42.93	■■■■■ 4.46
HMGB1-205	ENST00000399494	NUTM2B	A6NNL0	878 aa	Predicted RBP	42.92	■■■■■ 4.46
HMGB1-205	ENST00000399494	NUTM2E	B1AL46	878 aa	Predicted RBP	42.92	■■■■■ 4.46
HMGB1-205	ENST00000399494	NUTM2A	Q8IVF1	878 aa	Predicted RBP	42.92	■■■■■ 4.46
HMGB1-205	ENST00000399494	HFM1	A2PYH4	1435 aa		42.91	■■■■■ 4.46
HMGB1-205	ENST00000399494	SETD1A	O15047	1707 aa	Known RBP	42.91	■■■■■ 4.46
HMGB1-205	ENST00000399494	LRRC59	Q96AG4	307 aa	Known RBP	42.9	■■■■■ 4.46
HMGB1-205	ENST00000399494	NHSL1	Q5SYE7	1610 aa		42.88	■■■■■ 4.45
HMGB1-205	ENST00000399494	SLC4A1AP	Q9BWU0	796 aa	Known RBP	42.87	■■■■■ 4.45
HMGB1-205	ENST00000399494	DDX17	Q92841	729 aa	Known RBP	42.86	■■■■■ 4.45
HMGB1-205	ENST00000399494	RPGRIP1L	Q68CZ1	1315 aa		42.86	■■■■■ 4.45
HMGB1-205	ENST00000399494	NALCN	Q8IZF0	1738 aa		42.84	■■■■■ 4.45
HMGB1-205	ENST00000399494	ROBO2	Q9HCK4	1378 aa		42.79	■■■■■ 4.44
HMGB1-205	ENST00000399494	RXRB	P28702	533 aa		42.78	■■■■■ 4.44
HMGB1-205	ENST00000399494	PTCH1	Q13635	1447 aa		42.78	■■■■■ 4.44
HMGB1-205	ENST00000399494	C1orf167	Q5SNV9	1468 aa		42.77	■■■■■ 4.44
HMGB1-205	ENST00000399494	AFF2	P51816	1311 aa		42.75	■■■■■ 4.43
HMGB1-205	ENST00000399494	PNPLA6	Q8IY17	1366 aa		42.74	■■■■■ 4.43
HMGB1-205	ENST00000399494	PRAG1	Q86YV5	1406 aa		42.71	■■■■■ 4.43
HMGB1-205	ENST00000399494	UPF1	Q92900	1129 aa	Known RBP eCLIP	42.71	■■■■■ 4.43
HMGB1-205	ENST00000399494	FOXD1	Q16676	465 aa		42.7	■■■■■ 4.43
HMGB1-205	ENST00000399494	ORAI2	Q96SN7	254 aa		42.7	■■■■■ 4.43
HMGB1-205	ENST00000399494	PPL	O60437	1756 aa		42.67	■■■■■ 4.42
HMGB1-205	ENST00000399494	C8orf37	Q96NL8	207 aa		42.64	■■■■■ 4.42
HMGB1-205	ENST00000399494	SOS2	Q07890	1332 aa	Predicted RBP	42.64	■■■■■ 4.42
HMGB1-205	ENST00000399494	LAMC1	P11047	1609 aa		42.64	■■■■■ 4.42
HMGB1-205	ENST00000399494	CDK12	Q9NYV4	1490 aa	Predicted RBP	42.63	■■■■■ 4.42
HMGB1-205	ENST00000399494	QTRT2	Q9H974	415 aa	Known RBP	42.6	■■■■■ 4.41
HMGB1-205	ENST00000399494	ADGRF5	Q8IZF2	1346 aa		42.58	■■■■■ 4.41
HMGB1-205	ENST00000399494	RGL3	Q3MIN7	710 aa		42.55	■■■■■ 4.4
HMGB1-205	ENST00000399494	ADAMTS2	O95450	1211 aa		42.54	■■■■■ 4.4
HMGB1-205	ENST00000399494	MPHOSPH9	Q99550	1183 aa		42.54	■■■■■ 4.4
HMGB1-205	ENST00000399494	RBM6	P78332	1123 aa	Known RBP	42.53	■■■■■ 4.4
HMGB1-205	ENST00000399494	NGLY1	Q96IV0	654 aa		42.53	■■■■■ 4.4

Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms