RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 ZFYVE9O95405 1425 aa24.1■■□□□ 1.45
CHMP3-202ENST00000393773 KCNA6P17658 529 aa24.08■■□□□ 1.45
CHMP3-202ENST00000393773 RGS17Q9UGC6 210 aaPredicted RBP24.07■■□□□ 1.44
CHMP3-202ENST00000393773 E9PCH4 1651 aa24.07■■□□□ 1.44
CHMP3-202ENST00000393773 PHLPP1O60346 1717 aa24.07■■□□□ 1.44
CHMP3-202ENST00000393773 ANKRD50Q9ULJ7 1429 aa24.06■■□□□ 1.44
CHMP3-202ENST00000393773 SLC26A8Q96RN1 970 aa24.05■■□□□ 1.44
CHMP3-202ENST00000393773 SLC52A1Q9NWF4 448 aa24.02■■□□□ 1.44
CHMP3-202ENST00000393773 IQGAP3Q86VI3 1631 aa24.02■■□□□ 1.44
CHMP3-202ENST00000393773 PLEKHG1Q9ULL1 1385 aa24.02■■□□□ 1.44
CHMP3-202ENST00000393773 COL16A1Q07092 1604 aaPredicted RBP24■■□□□ 1.43
CHMP3-202ENST00000393773 DIP2AQ14689 1571 aa23.99■■□□□ 1.43
CHMP3-202ENST00000393773 RBM33Q96EV2 1170 aaKnown RBP23.99■■□□□ 1.43
CHMP3-202ENST00000393773 RIMS2Q9UQ26 1411 aa23.99■■□□□ 1.43
CHMP3-202ENST00000393773 PROSER2Q86WR7 435 aaPredicted RBP23.98■■□□□ 1.43
CHMP3-202ENST00000393773 SETD1AO15047 1707 aaKnown RBP23.98■■□□□ 1.43
CHMP3-202ENST00000393773 MSH6P52701 1360 aa23.97■■□□□ 1.43
CHMP3-202ENST00000393773 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.95■■□□□ 1.42
CHMP3-202ENST00000393773 FAM50AQ14320 339 aaKnown RBP23.93■■□□□ 1.42
CHMP3-202ENST00000393773 ADAMTS13Q76LX8 1427 aa23.92■■□□□ 1.42
CHMP3-202ENST00000393773 POTEAQ6S8J7 498 aa23.9■■□□□ 1.42
CHMP3-202ENST00000393773 SHPRHQ149N8 1683 aa23.89■■□□□ 1.42
CHMP3-202ENST00000393773 AHDC1Q5TGY3 1603 aaPredicted RBP23.89■■□□□ 1.42
CHMP3-202ENST00000393773 NRXN3Q9Y4C0 1643 aa23.89■■□□□ 1.42
CHMP3-202ENST00000393773 NCOA3Q9Y6Q9 1424 aa23.89■■□□□ 1.41
CHMP3-202ENST00000393773 SPHKAPQ2M3C7 1700 aa23.88■■□□□ 1.41
CHMP3-202ENST00000393773 ROCK1Q13464 1354 aa23.88■■□□□ 1.41
CHMP3-202ENST00000393773 XRN1Q8IZH2 1706 aaKnown RBP23.87■■□□□ 1.41
CHMP3-202ENST00000393773 BCANQ96GW7 911 aa23.87■■□□□ 1.41
CHMP3-202ENST00000393773 TRPM2O94759 1503 aa23.87■■□□□ 1.41
CHMP3-202ENST00000393773 PPP1R15AO75807 674 aaPredicted RBP23.86■■□□□ 1.41
CHMP3-202ENST00000393773 SLAIN2Q9P270 581 aa23.86■■□□□ 1.41
CHMP3-202ENST00000393773 JCADQ9P266 1359 aa23.86■■□□□ 1.41
CHMP3-202ENST00000393773 LRP6O75581 1613 aa23.85■■□□□ 1.41
CHMP3-202ENST00000393773 TBX22Q9Y458 520 aa23.84■■□□□ 1.41
CHMP3-202ENST00000393773 PIK3R4Q99570 1358 aa23.82■■□□□ 1.4
CHMP3-202ENST00000393773 SETBP1Q9Y6X0 1596 aa23.81■■□□□ 1.4
CHMP3-202ENST00000393773 HDGFP51858 240 aaKnown RBP23.8■■□□□ 1.4
CHMP3-202ENST00000393773 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.8■■□□□ 1.4
CHMP3-202ENST00000393773 PTPRUQ92729 1446 aa23.79■■□□□ 1.4
CHMP3-202ENST00000393773 NHSL1Q5SYE7 1610 aa23.77■■□□□ 1.4
CHMP3-202ENST00000393773 CHGAP10645 457 aaKnown RBP23.76■■□□□ 1.39
CHMP3-202ENST00000393773 NUTM2DQ5VT03 806 aaPredicted RBP23.76■■□□□ 1.39
CHMP3-202ENST00000393773 DCCP43146 1447 aa23.75■■□□□ 1.39
CHMP3-202ENST00000393773 NALCNQ8IZF0 1738 aa23.73■■□□□ 1.39
CHMP3-202ENST00000393773 NUP155O75694 1391 aa23.73■■□□□ 1.39
CHMP3-202ENST00000393773 ASXL1Q8IXJ9 1541 aa23.73■■□□□ 1.39
CHMP3-202ENST00000393773 CLTCL1P53675 1640 aa23.73■■□□□ 1.39
CHMP3-202ENST00000393773 SPATA31A6Q5VVP1 1343 aa23.72■■□□□ 1.39
CHMP3-202ENST00000393773 C14orf37Q86TY3 774 aa23.71■■□□□ 1.39
CHMP3-202ENST00000393773 CADPS2Q86UW7 1296 aa23.71■■□□□ 1.39
CHMP3-202ENST00000393773 NEXMIFQ5QGS0 1516 aa23.7■■□□□ 1.38
CHMP3-202ENST00000393773 C19orf44Q9H6X5 657 aa23.7■■□□□ 1.38
CHMP3-202ENST00000393773 KIF1BO60333 1816 aa23.68■■□□□ 1.38
CHMP3-202ENST00000393773 MST1RQ04912 1400 aa23.67■■□□□ 1.38
CHMP3-202ENST00000393773 ATF3P18847 181 aa23.66■■□□□ 1.38
CHMP3-202ENST00000393773 AMOTL2Q9Y2J4 779 aa23.66■■□□□ 1.38
CHMP3-202ENST00000393773 BRINP3Q76B58 766 aa23.65■■□□□ 1.38
CHMP3-202ENST00000393773 SETD5Q9C0A6 1442 aa23.62■■□□□ 1.37
CHMP3-202ENST00000393773 ADGRL3Q9HAR2 1447 aa23.62■■□□□ 1.37
CHMP3-202ENST00000393773 METP08581 1390 aa23.62■■□□□ 1.37
CHMP3-202ENST00000393773 LAMC1P11047 1609 aa23.62■■□□□ 1.37
CHMP3-202ENST00000393773 MEX3CQ5U5Q3 659 aaKnown RBP23.6■■□□□ 1.37
CHMP3-202ENST00000393773 ITGAEP38570 1179 aa23.59■■□□□ 1.37
CHMP3-202ENST00000393773 CDK12Q9NYV4 1490 aaPredicted RBP23.58■■□□□ 1.37
CHMP3-202ENST00000393773 ZNF772Q68DY9 489 aaPredicted RBP23.58■■□□□ 1.37
CHMP3-202ENST00000393773 PPLO60437 1756 aa23.55■■□□□ 1.36
CHMP3-202ENST00000393773 PTCH1Q13635 1447 aa23.53■■□□□ 1.36
CHMP3-202ENST00000393773 PRAG1Q86YV5 1406 aa23.52■■□□□ 1.36
CHMP3-202ENST00000393773 ZNF326Q5BKZ1 582 aaKnown RBP23.52■■□□□ 1.36
CHMP3-202ENST00000393773 PNPLA6Q8IY17 1366 aa23.52■■□□□ 1.36
CHMP3-202ENST00000393773 NAIPQ13075 1403 aa23.51■■□□□ 1.35
CHMP3-202ENST00000393773 RRBP1Q9P2E9 1410 aaKnown RBP23.51■■□□□ 1.35
CHMP3-202ENST00000393773 TRIM52Q96A61 297 aa23.51■■□□□ 1.35
CHMP3-202ENST00000393773 UPF1Q92900 1129 aaKnown RBP eCLIP23.5■■□□□ 1.35
CHMP3-202ENST00000393773 AFF2P51816 1311 aa23.49■■□□□ 1.35
CHMP3-202ENST00000393773 C1orf167Q5SNV9 1468 aa23.49■■□□□ 1.35
CHMP3-202ENST00000393773 NUTM2BA6NNL0 878 aaPredicted RBP23.48■■□□□ 1.35
CHMP3-202ENST00000393773 NUTM2EB1AL46 878 aaPredicted RBP23.48■■□□□ 1.35
CHMP3-202ENST00000393773 NUTM2AQ8IVF1 878 aaPredicted RBP23.48■■□□□ 1.35
CHMP3-202ENST00000393773 RGS12O14924 1447 aa23.47■■□□□ 1.35
CHMP3-202ENST00000393773 PPARGC1BQ86YN6 1023 aaKnown RBP23.46■■□□□ 1.35
CHMP3-202ENST00000393773 COL22A1Q8NFW1 1626 aaPredicted RBP23.46■■□□□ 1.35
CHMP3-202ENST00000393773 RXRBP28702 533 aa23.45■■□□□ 1.34
CHMP3-202ENST00000393773 DDX17Q92841 729 aaKnown RBP23.45■■□□□ 1.34
CHMP3-202ENST00000393773 ROBO2Q9HCK4 1378 aa23.43■■□□□ 1.34
CHMP3-202ENST00000393773 LRRC59Q96AG4 307 aaKnown RBP23.43■■□□□ 1.34
CHMP3-202ENST00000393773 CDC42BPGQ6DT37 1551 aa23.43■■□□□ 1.34
CHMP3-202ENST00000393773 IFT172Q9UG01 1749 aa23.42■■□□□ 1.34
CHMP3-202ENST00000393773 MARF1Q9Y4F3 1742 aaKnown RBP23.42■■□□□ 1.34
CHMP3-202ENST00000393773 HFM1A2PYH4 1435 aa23.41■■□□□ 1.34
CHMP3-202ENST00000393773 C8orf37Q96NL8 207 aa23.38■■□□□ 1.33
CHMP3-202ENST00000393773 KNDC1Q76NI1 1749 aa23.37■■□□□ 1.33
CHMP3-202ENST00000393773 SOS2Q07890 1332 aaPredicted RBP23.35■■□□□ 1.33
CHMP3-202ENST00000393773 EP400Q96L91 3159 aa23.35■■□□□ 1.33
CHMP3-202ENST00000393773 MYOM2P54296 1465 aa23.32■■□□□ 1.32
CHMP3-202ENST00000393773 PXDNQ92626 1479 aa23.32■■□□□ 1.32
CHMP3-202ENST00000393773 VGFO15240 615 aaPredicted RBP23.32■■□□□ 1.32
CHMP3-202ENST00000393773 RBM6P78332 1123 aaKnown RBP23.32■■□□□ 1.32
CHMP3-202ENST00000393773 RPGRIP1LQ68CZ1 1315 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms