RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 USP47Q96K76 1375 aa37.8■■■■□ 3.64
MSX1-201ENST00000382723 NUTM2DQ5VT03 806 aaPredicted RBP37.79■■■■□ 3.64
MSX1-201ENST00000382723 C3P01024 1663 aa37.78■■■■□ 3.64
MSX1-201ENST00000382723 PPLO60437 1756 aa37.77■■■■□ 3.64
MSX1-201ENST00000382723 NEXMIFQ5QGS0 1516 aa37.75■■■■□ 3.63
MSX1-201ENST00000382723 MYO5BQ9ULV0 1848 aa37.74■■■■□ 3.63
MSX1-201ENST00000382723 GPRASP1Q5JY77 1395 aa37.73■■■■□ 3.63
MSX1-201ENST00000382723 NRXN1Q9ULB1 1477 aa37.73■■■■□ 3.63
MSX1-201ENST00000382723 VGFO15240 615 aaPredicted RBP37.71■■■■□ 3.63
MSX1-201ENST00000382723 A2ML1A8K2U0 1454 aa37.71■■■■□ 3.63
MSX1-201ENST00000382723 RIMS1Q86UR5 1692 aaKnown RBP37.7■■■■□ 3.63
MSX1-201ENST00000382723 CFAP70Q5T0N1 1121 aa37.7■■■■□ 3.63
MSX1-201ENST00000382723 ADAMTSL3P82987 1691 aa37.69■■■■□ 3.62
MSX1-201ENST00000382723 PIK3C2GO75747 1445 aa37.65■■■■□ 3.62
MSX1-201ENST00000382723 LAMC1P11047 1609 aa37.63■■■■□ 3.61
MSX1-201ENST00000382723 ST20-MTHFSA0A0A6YYL1 179 aa37.61■■■■□ 3.61
MSX1-201ENST00000382723 SENP3Q9H4L4 574 aaPredicted RBP37.61■■■■□ 3.61
MSX1-201ENST00000382723 NLRP1Q9C000 1473 aa37.61■■■■□ 3.61
MSX1-201ENST00000382723 KIAA1210Q9ULL0 1709 aa37.61■■■■□ 3.61
MSX1-201ENST00000382723 ZFYVE9O95405 1425 aa37.6■■■■□ 3.61
MSX1-201ENST00000382723 RIMS2Q9UQ26 1411 aa37.58■■■■□ 3.61
MSX1-201ENST00000382723 C14orf93Q9H972 538 aaKnown RBP37.57■■■■□ 3.61
MSX1-201ENST00000382723 C11orf95C9JLR9 678 aaPredicted RBP37.56■■■■□ 3.6
MSX1-201ENST00000382723 DDX10Q13206 875 aaKnown RBP37.55■■■■□ 3.6
MSX1-201ENST00000382723 WASHC2AQ641Q2 1341 aa37.55■■■■□ 3.6
MSX1-201ENST00000382723 UBR1Q8IWV7 1749 aa37.53■■■■□ 3.6
MSX1-201ENST00000382723 SCAF11Q99590 1463 aaKnown RBP37.51■■■■□ 3.59
MSX1-201ENST00000382723 KDM5AP29375 1690 aaKnown RBP37.49■■■■□ 3.59
MSX1-201ENST00000382723 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.48■■■■□ 3.59
MSX1-201ENST00000382723 TMEM132EQ6IEE7 984 aa37.48■■■■□ 3.59
MSX1-201ENST00000382723 TMEM2Q9UHN6 1383 aa37.47■■■■□ 3.59
MSX1-201ENST00000382723 CCDC7Q96M83 1385 aa37.46■■■■□ 3.59
MSX1-201ENST00000382723 IQGAP1P46940 1657 aa37.46■■■■□ 3.59
MSX1-201ENST00000382723 MYO3AQ8NEV4 1616 aa37.46■■■■□ 3.59
MSX1-201ENST00000382723 SETBP1Q9Y6X0 1596 aa37.45■■■■□ 3.59
MSX1-201ENST00000382723 HDGFP51858 240 aaKnown RBP37.45■■■■□ 3.59
MSX1-201ENST00000382723 KIF7Q2M1P5 1343 aa37.44■■■■□ 3.58
MSX1-201ENST00000382723 ADGRB1O14514 1584 aa37.42■■■■□ 3.58
MSX1-201ENST00000382723 PTPRMP28827 1452 aa37.4■■■■□ 3.58
MSX1-201ENST00000382723 EIF3AQ14152 1382 aaKnown RBP37.4■■■■□ 3.58
MSX1-201ENST00000382723 POLR3GLQ9BT43 218 aa37.39■■■■□ 3.58
MSX1-201ENST00000382723 THEMISQ8N1K5 641 aaPredicted RBP37.38■■■■□ 3.57
MSX1-201ENST00000382723 TESK2Q96S53 571 aa37.38■■■■□ 3.57
MSX1-201ENST00000382723 TRAK1Q9UPV9 953 aa37.37■■■■□ 3.57
MSX1-201ENST00000382723 CEP170BQ9Y4F5 1589 aaPredicted RBP37.34■■■■□ 3.57
MSX1-201ENST00000382723 ALKQ9UM73 1620 aa37.34■■■■□ 3.57
MSX1-201ENST00000382723 LTKP29376 864 aa37.33■■■■□ 3.57
MSX1-201ENST00000382723 TXNDC2Q86VQ3 553 aa37.33■■■■□ 3.57
MSX1-201ENST00000382723 BCANQ96GW7 911 aa37.33■■■■□ 3.57
MSX1-201ENST00000382723 EID1Q9Y6B2 187 aa37.32■■■■□ 3.56
MSX1-201ENST00000382723 POLR1AO95602 1720 aaPredicted RBP37.31■■■■□ 3.56
MSX1-201ENST00000382723 ASXL1Q8IXJ9 1541 aa37.31■■■■□ 3.56
MSX1-201ENST00000382723 SLIT1O75093 1534 aa37.29■■■■□ 3.56
MSX1-201ENST00000382723 MIER1Q8N108 512 aa37.28■■■■□ 3.56
MSX1-201ENST00000382723 STK26Q9P289 416 aa37.28■■■■□ 3.56
MSX1-201ENST00000382723 ARHGAP23Q9P227 1491 aa37.28■■■■□ 3.56
MSX1-201ENST00000382723 DISP3Q9P2K9 1392 aa37.27■■■■□ 3.56
MSX1-201ENST00000382723 TMF1P82094 1093 aa37.26■■■■□ 3.56
MSX1-201ENST00000382723 NRXN3Q9Y4C0 1643 aa37.25■■■■□ 3.55
MSX1-201ENST00000382723 CENPJQ9HC77 1338 aaPredicted RBP37.23■■■■□ 3.55
MSX1-201ENST00000382723 PLEKHG1Q9ULL1 1385 aa37.22■■■■□ 3.55
MSX1-201ENST00000382723 YTHDC2Q9H6S0 1430 aaKnown RBP37.21■■■■□ 3.55
MSX1-201ENST00000382723 ZNF142P52746 1687 aaPredicted RBP37.2■■■■□ 3.55
MSX1-201ENST00000382723 SETD1BQ9UPS6 1966 aaKnown RBP37.18■■■■□ 3.54
MSX1-201ENST00000382723 SETD1AO15047 1707 aaKnown RBP37.17■■■■□ 3.54
MSX1-201ENST00000382723 KDM4FA0A1W2PPD8 638 aa37.16■■■■□ 3.54
MSX1-201ENST00000382723 METP08581 1390 aa37.16■■■■□ 3.54
MSX1-201ENST00000382723 ADAMTS13Q76LX8 1427 aa37.13■■■■□ 3.53
MSX1-201ENST00000382723 ARHGEF28Q8N1W1 1705 aaKnown RBP37.13■■■■□ 3.53
MSX1-201ENST00000382723 SLC26A8Q96RN1 970 aa37.11■■■■□ 3.53
MSX1-201ENST00000382723 SLC24A1O60721 1099 aa37.1■■■■□ 3.53
MSX1-201ENST00000382723 SAFB2Q14151 953 aaKnown RBP eCLIP37.1■■■■□ 3.53
MSX1-201ENST00000382723 LRPPRCP42704 1394 aaKnown RBP37.1■■■■□ 3.53
MSX1-201ENST00000382723 SBNO2Q9Y2G9 1366 aa37.1■■■■□ 3.53
MSX1-201ENST00000382723 QRICH2Q9H0J4 1663 aa37.09■■■■□ 3.53
MSX1-201ENST00000382723 ANKLE2Q86XL3 938 aa37.08■■■■□ 3.53
MSX1-201ENST00000382723 CDCA8Q53HL2 280 aa37.08■■■■□ 3.53
MSX1-201ENST00000382723 PRAM1Q96QH2 718 aa37.08■■■■□ 3.53
MSX1-201ENST00000382723 POGKQ9P215 609 aa37.06■■■■□ 3.52
MSX1-201ENST00000382723 ANP32CO43423 234 aa37.04■■■■□ 3.52
MSX1-201ENST00000382723 ABCC11Q96J66 1382 aa37.03■■■■□ 3.52
MSX1-201ENST00000382723 MED14O60244 1454 aa37.03■■■■□ 3.52
MSX1-201ENST00000382723 TBX22Q9Y458 520 aa36.99■■■■□ 3.51
MSX1-201ENST00000382723 DLC1Q96QB1 1528 aa36.99■■■■□ 3.51
MSX1-201ENST00000382723 WAPLQ7Z5K2 1190 aa36.98■■■■□ 3.51
MSX1-201ENST00000382723 MINK1Q8N4C8 1332 aaPredicted RBP36.96■■■■□ 3.51
MSX1-201ENST00000382723 PLEKHH1Q9ULM0 1364 aa36.94■■■■□ 3.5
MSX1-201ENST00000382723 EVC2Q86UK5 1308 aa36.93■■■■□ 3.5
MSX1-201ENST00000382723 DIP2AQ14689 1571 aa36.93■■■■□ 3.5
MSX1-201ENST00000382723 TECPR2O15040 1411 aa36.91■■■■□ 3.5
MSX1-201ENST00000382723 PTPRUQ92729 1446 aa36.91■■■■□ 3.5
MSX1-201ENST00000382723 TULP4Q9NRJ4 1543 aa36.9■■■■□ 3.5
MSX1-201ENST00000382723 PANK3Q9H999 370 aa36.89■■■■□ 3.5
MSX1-201ENST00000382723 NCKAP5LQ9HCH0 1330 aa36.89■■■■□ 3.5
MSX1-201ENST00000382723 KNDC1Q76NI1 1749 aa36.88■■■■□ 3.49
MSX1-201ENST00000382723 AMOTL2Q9Y2J4 779 aa36.87■■■■□ 3.49
MSX1-201ENST00000382723 CPS1P31327 1500 aa36.87■■■■□ 3.49
MSX1-201ENST00000382723 SIRT1Q96EB6 747 aa36.87■■■■□ 3.49
MSX1-201ENST00000382723 ROBO2Q9HCK4 1378 aa36.86■■■■□ 3.49
MSX1-201ENST00000382723 FAM135BQ49AJ0 1406 aa36.86■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms