RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 CCNB3Q8WWL7 1395 aa11.95□□□□□ -0.5
UBR4-201ENST00000375218 ZNF644Q9H582 1327 aaPredicted RBP11.95□□□□□ -0.5
UBR4-201ENST00000375218 PLCD3Q8N3E9 789 aa11.95□□□□□ -0.5
UBR4-201ENST00000375218 GPATCH8Q9UKJ3 1502 aaKnown RBP11.95□□□□□ -0.5
UBR4-201ENST00000375218 ANKRD13AQ8IZ07 590 aa11.95□□□□□ -0.5
UBR4-201ENST00000375218 ANKRD62A6NC57 917 aa11.94□□□□□ -0.5
UBR4-201ENST00000375218 GTF2E1P29083 439 aaPredicted RBP11.94□□□□□ -0.5
UBR4-201ENST00000375218 GORABQ5T7V8 394 aa11.94□□□□□ -0.5
UBR4-201ENST00000375218 TPD52L2O43399 206 aaKnown RBP11.94□□□□□ -0.5
UBR4-201ENST00000375218 KAT6BQ8WYB5 2073 aa11.93□□□□□ -0.5
UBR4-201ENST00000375218 PPME1Q9Y570 386 aa11.93□□□□□ -0.5
UBR4-201ENST00000375218 NAIPQ13075 1403 aa11.92□□□□□ -0.5
UBR4-201ENST00000375218 MBD5Q9P267 1494 aa11.92□□□□□ -0.5
UBR4-201ENST00000375218 PPRC1Q5VV67 1664 aaKnown RBP11.92□□□□□ -0.5
UBR4-201ENST00000375218 UNCXA6NJT0 531 aa11.91□□□□□ -0.5
UBR4-201ENST00000375218 MYOM3Q5VTT5 1437 aa11.91□□□□□ -0.5
UBR4-201ENST00000375218 JPH4Q96JJ6 628 aa11.91□□□□□ -0.5
UBR4-201ENST00000375218 APPP05067 770 aa11.91□□□□□ -0.5
UBR4-201ENST00000375218 CCDC18Q5T9S5 1454 aa11.89□□□□□ -0.51
UBR4-201ENST00000375218 CLGNO14967 610 aa11.89□□□□□ -0.51
UBR4-201ENST00000375218 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.89□□□□□ -0.51
UBR4-201ENST00000375218 MICAL1Q8TDZ2 1067 aa11.89□□□□□ -0.51
UBR4-201ENST00000375218 SLC52A1Q9NWF4 448 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 ADGBQ8N7X0 1667 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 HS6ST3Q8IZP7 471 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 RAB3GAP2Q9H2M9 1393 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 ZNF662Q6ZS27 426 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 ABCC5O15440 1437 aa11.88□□□□□ -0.51
UBR4-201ENST00000375218 FOXD1Q16676 465 aa11.87□□□□□ -0.51
UBR4-201ENST00000375218 PHF14O94880 888 aa11.87□□□□□ -0.51
UBR4-201ENST00000375218 FOXD4Q12950 439 aaPredicted RBP11.86□□□□□ -0.51
UBR4-201ENST00000375218 ABCA9Q8IUA7 1624 aa11.86□□□□□ -0.51
UBR4-201ENST00000375218 SPATA32Q96LK8 384 aa11.86□□□□□ -0.51
UBR4-201ENST00000375218 TERF2IPQ9NYB0 399 aa11.86□□□□□ -0.51
UBR4-201ENST00000375218 EVI5LQ96CN4 794 aa11.85□□□□□ -0.51
UBR4-201ENST00000375218 CAMSAP2Q08AD1 1489 aa11.84□□□□□ -0.51
UBR4-201ENST00000375218 ITSN2Q9NZM3 1697 aa11.84□□□□□ -0.51
UBR4-201ENST00000375218 RIOK3O14730 519 aaKnown RBP11.84□□□□□ -0.51
UBR4-201ENST00000375218 HFM1A2PYH4 1435 aa11.84□□□□□ -0.51
UBR4-201ENST00000375218 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
UBR4-201ENST00000375218 ZNF622Q969S3 477 aaKnown RBP eCLIP11.83□□□□□ -0.521e-10■□□□□ 9.4
UBR4-201ENST00000375218 MYO5CQ9NQX4 1742 aa11.83□□□□□ -0.52
UBR4-201ENST00000375218 MROH1Q8NDA8 1641 aa11.83□□□□□ -0.52
UBR4-201ENST00000375218 SENP3Q9H4L4 574 aaPredicted RBP11.83□□□□□ -0.52
UBR4-201ENST00000375218 UHRF1BP1LA0JNW5 1464 aa11.82□□□□□ -0.52
UBR4-201ENST00000375218 STAC3Q96MF2 364 aa11.82□□□□□ -0.52
UBR4-201ENST00000375218 TROQ12816 1431 aaPredicted RBP11.81□□□□□ -0.52
UBR4-201ENST00000375218 KCNV2Q8TDN2 545 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 SIRT1Q96EB6 747 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 PZPP20742 1482 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 RALBP1Q15311 655 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 RIMBP3CA6NJZ7 1639 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 RIMBP3BA6NNM3 1639 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 RIMBP3Q9UFD9 1639 aa11.81□□□□□ -0.52
UBR4-201ENST00000375218 RAB11FIP3O75154 756 aa11.8□□□□□ -0.52
UBR4-201ENST00000375218 DAPK1P53355 1430 aa11.8□□□□□ -0.52
UBR4-201ENST00000375218 ARMCX6Q7L4S7 300 aa11.8□□□□□ -0.52
UBR4-201ENST00000375218 VTI1AQ96AJ9 217 aa11.8□□□□□ -0.52
UBR4-201ENST00000375218 CCDC97Q96F63 343 aaPredicted RBP11.8□□□□□ -0.52
UBR4-201ENST00000375218 SUGT1Q9Y2Z0 365 aa11.8□□□□□ -0.52
UBR4-201ENST00000375218 CARNS1A5YM72 827 aa11.79□□□□□ -0.52
UBR4-201ENST00000375218 TRAK2O60296 914 aa11.79□□□□□ -0.52
UBR4-201ENST00000375218 POLD1P28340 1107 aa11.79□□□□□ -0.52
UBR4-201ENST00000375218 CHMP7Q8WUX9 453 aaPredicted RBP11.79□□□□□ -0.52
UBR4-201ENST00000375218 KIF13AQ9H1H9 1805 aa11.79□□□□□ -0.52
UBR4-201ENST00000375218 HDAC5Q9UQL6 1122 aa11.79□□□□□ -0.52
UBR4-201ENST00000375218 PNMA2Q9UL42 364 aa11.78□□□□□ -0.52
UBR4-201ENST00000375218 FAM117AQ9C073 453 aa11.78□□□□□ -0.52
UBR4-201ENST00000375218 TMX4Q9H1E5 349 aaPredicted RBP11.78□□□□□ -0.52
UBR4-201ENST00000375218 FRMPD1Q5SYB0 1578 aa11.78□□□□□ -0.52
UBR4-201ENST00000375218 MAP4K4O95819 1239 aaPredicted RBP11.78□□□□□ -0.52
UBR4-201ENST00000375218 CCER2I3L3R5 266 aa11.77□□□□□ -0.52
UBR4-201ENST00000375218 ADGRL2O95490 1459 aa11.77□□□□□ -0.53
UBR4-201ENST00000375218 UACAQ9BZF9 1416 aa11.77□□□□□ -0.53
UBR4-201ENST00000375218 RINLQ6ZS11 566 aa11.76□□□□□ -0.53
UBR4-201ENST00000375218 KIDINS220Q9ULH0 1771 aa11.76□□□□□ -0.53
UBR4-201ENST00000375218 ARHGEF5Q12774 1597 aa11.76□□□□□ -0.53
UBR4-201ENST00000375218 KIF4AO95239 1232 aa11.76□□□□□ -0.53
UBR4-201ENST00000375218 SYCP2Q9BX26 1530 aa11.75□□□□□ -0.53
UBR4-201ENST00000375218 NEUROD1Q13562 356 aa11.75□□□□□ -0.53
UBR4-201ENST00000375218 MPNDQ8N594 471 aa11.75□□□□□ -0.53
UBR4-201ENST00000375218 DEPDC5O75140 1603 aa11.75□□□□□ -0.53
UBR4-201ENST00000375218 MIA2Q96PC5 1412 aa11.75□□□□□ -0.53
UBR4-201ENST00000375218 ABCC1P33527 1531 aa11.74□□□□□ -0.53
UBR4-201ENST00000375218 HIRIP3Q9BW71 556 aaPredicted RBP11.74□□□□□ -0.53
UBR4-201ENST00000375218 AKNAQ7Z591 1439 aa11.74□□□□□ -0.53
UBR4-201ENST00000375218 MAST1Q9Y2H9 1570 aa11.74□□□□□ -0.53
UBR4-201ENST00000375218 MAP3K4Q9Y6R4 1608 aa11.74□□□□□ -0.53
UBR4-201ENST00000375218 INO80Q9ULG1 1556 aaPredicted RBP11.74□□□□□ -0.53
UBR4-201ENST00000375218 KLHL42Q9P2K6 505 aa11.73□□□□□ -0.53
UBR4-201ENST00000375218 MYCNP04198 464 aaPredicted RBP11.73□□□□□ -0.53
UBR4-201ENST00000375218 PAX3P23760 479 aa11.73□□□□□ -0.53
UBR4-201ENST00000375218 KDM4CQ9H3R0 1056 aa11.73□□□□□ -0.53
UBR4-201ENST00000375218 NCOA1Q15788 1441 aa11.73□□□□□ -0.53
UBR4-201ENST00000375218 BARGINQ6ZT62 677 aa11.72□□□□□ -0.53
UBR4-201ENST00000375218 SETD5Q9C0A6 1442 aa11.72□□□□□ -0.53
UBR4-201ENST00000375218 RICTORQ6R327 1708 aa11.72□□□□□ -0.53
UBR4-201ENST00000375218 MAGI2Q86UL8 1455 aa11.71□□□□□ -0.53
UBR4-201ENST00000375218 UNC13BO14795 1591 aa11.71□□□□□ -0.53
UBR4-201ENST00000375218 PLA2R1Q13018 1463 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms