RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 APAF1O14727 1248 aa14.16□□□□□ -0.14
PTPRF-203ENST00000372407 NOL8Q76FK4 1167 aaKnown RBP14.16□□□□□ -0.14
PTPRF-203ENST00000372407 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-203ENST00000372407 KIF3AQ9Y496 699 aa14.16□□□□□ -0.14
PTPRF-203ENST00000372407 COG6Q9Y2V7 657 aa14.16□□□□□ -0.14
PTPRF-203ENST00000372407 GSE1Q14687 1217 aa14.15□□□□□ -0.14
PTPRF-203ENST00000372407 NUTM2DQ5VT03 806 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-203ENST00000372407 FGD6Q6ZV73 1430 aa14.15□□□□□ -0.14
PTPRF-203ENST00000372407 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.15□□□□□ -0.14
PTPRF-203ENST00000372407 ELL2O00472 640 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-203ENST00000372407 SLC4A3P48751 1232 aa14.15□□□□□ -0.14
PTPRF-203ENST00000372407 CHMP3Q9Y3E7 222 aa14.15□□□□□ -0.14
PTPRF-203ENST00000372407 KIF16BQ96L93 1317 aa14.15□□□□□ -0.14
PTPRF-203ENST00000372407 PLEKHH2Q8IVE3 1493 aa14.15□□□□□ -0.15
PTPRF-203ENST00000372407 ANKRD45Q5TZF3 282 aa14.14□□□□□ -0.15
PTPRF-203ENST00000372407 DDX49Q9Y6V7 483 aaKnown RBP14.14□□□□□ -0.15
PTPRF-203ENST00000372407 SCAPERQ9BY12 1400 aa14.14□□□□□ -0.15
PTPRF-203ENST00000372407 HSP90B1P14625 803 aaKnown RBP14.14□□□□□ -0.15
PTPRF-203ENST00000372407 TAF7LQ5H9L4 462 aa14.14□□□□□ -0.15
PTPRF-203ENST00000372407 ARID3AQ99856 593 aa14.13□□□□□ -0.15
PTPRF-203ENST00000372407 SKOR2Q2VWA4 1001 aaPredicted RBP14.13□□□□□ -0.15
PTPRF-203ENST00000372407 VGFO15240 615 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-203ENST00000372407 POGZQ7Z3K3 1410 aa14.11□□□□□ -0.15
PTPRF-203ENST00000372407 EPRSP07814 1512 aaKnown RBP14.11□□□□□ -0.15
PTPRF-203ENST00000372407 EVC2Q86UK5 1308 aa14.11□□□□□ -0.15
PTPRF-203ENST00000372407 ATP6V1DQ9Y5K8 247 aa14.11□□□□□ -0.15
PTPRF-203ENST00000372407 LTV1Q96GA3 475 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-203ENST00000372407 DDX19BQ9UMR2 479 aa14.1□□□□□ -0.15
PTPRF-203ENST00000372407 SF3A1Q15459 793 aaKnown RBP14.1□□□□□ -0.15
PTPRF-203ENST00000372407 CDK13Q14004 1512 aaKnown RBP14.09□□□□□ -0.15
PTPRF-203ENST00000372407 EHBP1L1Q8N3D4 1523 aa14.09□□□□□ -0.15
PTPRF-203ENST00000372407 FOXD4L5Q5VV16 416 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-203ENST00000372407 FOXD4L4Q8WXT5 416 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-203ENST00000372407 ADAMTS12P58397 1594 aa14.09□□□□□ -0.15
PTPRF-203ENST00000372407 NUTM2FA1L443 756 aa14.09□□□□□ -0.15
PTPRF-203ENST00000372407 RILPL2Q969X0 211 aa14.09□□□□□ -0.15
PTPRF-203ENST00000372407 CLSTN1O94985 981 aa14.08□□□□□ -0.16
PTPRF-203ENST00000372407 COG3Q96JB2 828 aa14.08□□□□□ -0.16
PTPRF-203ENST00000372407 REC8O95072 547 aa14.07□□□□□ -0.16
PTPRF-203ENST00000372407 CHMP4CQ96CF2 233 aa14.07□□□□□ -0.16
PTPRF-203ENST00000372407 DZIP1LQ8IYY4 767 aaKnown RBP14.07□□□□□ -0.16
PTPRF-203ENST00000372407 RSPH6AQ9H0K4 717 aa14.07□□□□□ -0.16
PTPRF-203ENST00000372407 ANKRD50Q9ULJ7 1429 aa14.06□□□□□ -0.16
PTPRF-203ENST00000372407 CCDC7Q96M83 1385 aa14.06□□□□□ -0.16
PTPRF-203ENST00000372407 CHMP5Q9NZZ3 219 aa14.06□□□□□ -0.16
PTPRF-203ENST00000372407 API5Q9BZZ5 524 aaKnown RBP14.05□□□□□ -0.16
PTPRF-203ENST00000372407 KIF7Q2M1P5 1343 aa14.05□□□□□ -0.16
PTPRF-203ENST00000372407 HSP90AA2PQ14568 343 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-203ENST00000372407 RASSF8Q8NHQ8 419 aa14.05□□□□□ -0.16
PTPRF-203ENST00000372407 STAC3Q96MF2 364 aa14.04□□□□□ -0.16
PTPRF-203ENST00000372407 DIAPH1O60610 1272 aaKnown RBP14.04□□□□□ -0.16
PTPRF-203ENST00000372407 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.04□□□□□ -0.16
PTPRF-203ENST00000372407 TOMM22Q9NS69 142 aa14.04□□□□□ -0.16
PTPRF-203ENST00000372407 MIA2Q96PC5 1412 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 ARHGEF11O15085 1522 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 H3BQV1 296 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 TEFQ10587 303 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 IFFO2Q5TF58 517 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 FAM184AQ8NB25 1140 aa14.03□□□□□ -0.16
PTPRF-203ENST00000372407 BECN2A8MW95 431 aa14.02□□□□□ -0.16
PTPRF-203ENST00000372407 GOLGA6L19H0YKK7 550 aa14.02□□□□□ -0.16
PTPRF-203ENST00000372407 NOC3LQ8WTT2 800 aaKnown RBP14.02□□□□□ -0.16
PTPRF-203ENST00000372407 RUFY2Q8WXA3 655 aa14.02□□□□□ -0.16
PTPRF-203ENST00000372407 DIAPH3Q9NSV4 1193 aa14.02□□□□□ -0.16
PTPRF-203ENST00000372407 NUP160Q12769 1436 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 AAMPQ13685 434 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 ASXL2Q76L83 1435 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 TPM3P06753 285 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 RIPK4P57078 832 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 RUNDC1Q96C34 613 aa14.02□□□□□ -0.17
PTPRF-203ENST00000372407 MINK1Q8N4C8 1332 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 FOXD4L6Q3SYB3 417 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 FOXD4L3Q6VB84 417 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 GOLGA6L1Q8N7Z2 621 aa14.01□□□□□ -0.17
PTPRF-203ENST00000372407 AMER1Q5JTC6 1135 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 C9orf84Q5VXU9 1444 aa14.01□□□□□ -0.17
PTPRF-203ENST00000372407 ZKSCAN1P17029 563 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 TNNT3P45378 269 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-203ENST00000372407 ADGRL1O94910 1474 aa14□□□□□ -0.17
PTPRF-203ENST00000372407 CPLX2Q6PUV4 134 aaKnown RBP14□□□□□ -0.17
PTPRF-203ENST00000372407 NEXNQ0ZGT2 675 aa13.99□□□□□ -0.17
PTPRF-203ENST00000372407 CREBRFQ8IUR6 639 aa13.99□□□□□ -0.17
PTPRF-203ENST00000372407 FRAT2O75474 233 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-203ENST00000372407 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
PTPRF-203ENST00000372407 GTF2E1P29083 439 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 LRRFIP1Q32MZ4 808 aaKnown RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 C1orf141Q5JVX7 400 aa13.98□□□□□ -0.17
PTPRF-203ENST00000372407 TMX4Q9H1E5 349 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 CNTLNQ9NXG0 1405 aa13.98□□□□□ -0.17
PTPRF-203ENST00000372407 THEMISQ8N1K5 641 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 C9orf78Q9NZ63 289 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 DENND4BO75064 1496 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-203ENST00000372407 TEX14Q8IWB6 1497 aa13.98□□□□□ -0.17
PTPRF-203ENST00000372407 TIAM1Q13009 1591 aa13.97□□□□□ -0.17
PTPRF-203ENST00000372407 THOC2Q8NI27 1593 aaKnown RBP13.97□□□□□ -0.17
PTPRF-203ENST00000372407 NUCB2P80303 420 aa13.97□□□□□ -0.17
PTPRF-203ENST00000372407 KIF14Q15058 1648 aa13.97□□□□□ -0.17
PTPRF-203ENST00000372407 LNPKQ9C0E8 428 aa13.97□□□□□ -0.17
PTPRF-203ENST00000372407 ANO2Q9NQ90 1003 aa13.96□□□□□ -0.17
PTPRF-203ENST00000372407 GNAI1P63096 354 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms