RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CHGAP10645 457 aaKnown RBP19.24■□□□□ 0.67
PTPRF-202ENST00000372405 MLECQ14165 292 aa19.24■□□□□ 0.67
PTPRF-202ENST00000372405 FBXO31Q5XUX0 539 aaPredicted RBP19.24■□□□□ 0.67
PTPRF-202ENST00000372405 IDI1Q13907 227 aa19.23■□□□□ 0.67
PTPRF-202ENST00000372405 TMEM131LA2VDJ0 1609 aa19.21■□□□□ 0.67
PTPRF-202ENST00000372405 NEXMIFQ5QGS0 1516 aa19.21■□□□□ 0.67
PTPRF-202ENST00000372405 ARID4BQ4LE39 1312 aaPredicted RBP19.21■□□□□ 0.67
PTPRF-202ENST00000372405 SLC52A1Q9NWF4 448 aa19.21■□□□□ 0.67
PTPRF-202ENST00000372405 SPATA31D1Q6ZQQ2 1576 aa19.2■□□□□ 0.66
PTPRF-202ENST00000372405 ANP32CO43423 234 aa19.19■□□□□ 0.66
PTPRF-202ENST00000372405 YTHDC1Q96MU7 727 aaKnown RBP19.19■□□□□ 0.66
PTPRF-202ENST00000372405 TESK2Q96S53 571 aa19.19■□□□□ 0.66
PTPRF-202ENST00000372405 CFAP70Q5T0N1 1121 aa19.19■□□□□ 0.66
PTPRF-202ENST00000372405 RPGRIP1LQ68CZ1 1315 aa19.18■□□□□ 0.66
PTPRF-202ENST00000372405 PIK3C2GO75747 1445 aa19.18■□□□□ 0.66
PTPRF-202ENST00000372405 SCAF11Q99590 1463 aaKnown RBP19.17■□□□□ 0.66
PTPRF-202ENST00000372405 POLR3GLQ9BT43 218 aa19.14■□□□□ 0.65
PTPRF-202ENST00000372405 ZMYM3Q14202 1370 aa19.14■□□□□ 0.65
PTPRF-202ENST00000372405 DISP3Q9P2K9 1392 aa19.14■□□□□ 0.65
PTPRF-202ENST00000372405 SETBP1Q9Y6X0 1596 aa19.14■□□□□ 0.65
PTPRF-202ENST00000372405 ADGRB1O14514 1584 aa19.12■□□□□ 0.65
PTPRF-202ENST00000372405 CCER2I3L3R5 266 aa19.12■□□□□ 0.65
PTPRF-202ENST00000372405 NUTM2DQ5VT03 806 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-202ENST00000372405 C14orf93Q9H972 538 aaKnown RBP19.1■□□□□ 0.65
PTPRF-202ENST00000372405 ZFYVE9O95405 1425 aa19.1■□□□□ 0.65
PTPRF-202ENST00000372405 VGFO15240 615 aaPredicted RBP19.08■□□□□ 0.65
PTPRF-202ENST00000372405 ESF1Q9H501 851 aaKnown RBP19.08■□□□□ 0.64
PTPRF-202ENST00000372405 A2ML1A8K2U0 1454 aa19.07■□□□□ 0.64
PTPRF-202ENST00000372405 MYO3AQ8NEV4 1616 aa19.07■□□□□ 0.64
PTPRF-202ENST00000372405 PRKRIP1Q9H875 184 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-202ENST00000372405 EIF3AQ14152 1382 aaKnown RBP19.05■□□□□ 0.64
PTPRF-202ENST00000372405 TMF1P82094 1093 aa19.05■□□□□ 0.64
PTPRF-202ENST00000372405 CENPBP07199 599 aaPredicted RBP19.04■□□□□ 0.64
PTPRF-202ENST00000372405 TMEM132EQ6IEE7 984 aa19.03■□□□□ 0.64
PTPRF-202ENST00000372405 ASXL1Q8IXJ9 1541 aa19.03■□□□□ 0.64
PTPRF-202ENST00000372405 FER1L4A9Z1Z3 1794 aa19.03■□□□□ 0.64
PTPRF-202ENST00000372405 C3P01024 1663 aa19.01■□□□□ 0.63
PTPRF-202ENST00000372405 TNRQ92752 1358 aa19.01■□□□□ 0.63
PTPRF-202ENST00000372405 STAG3Q9UJ98 1225 aa19.01■□□□□ 0.63
PTPRF-202ENST00000372405 ARHGEF28Q8N1W1 1705 aaKnown RBP19■□□□□ 0.63
PTPRF-202ENST00000372405 MYOM1P52179 1685 aa18.99■□□□□ 0.63
PTPRF-202ENST00000372405 QRICH2Q9H0J4 1663 aa18.99■□□□□ 0.63
PTPRF-202ENST00000372405 TRAK1Q9UPV9 953 aa18.99■□□□□ 0.63
PTPRF-202ENST00000372405 KDM5AP29375 1690 aaKnown RBP18.98■□□□□ 0.63
PTPRF-202ENST00000372405 UBR1Q8IWV7 1749 aa18.98■□□□□ 0.63
PTPRF-202ENST00000372405 RIMS2Q9UQ26 1411 aa18.98■□□□□ 0.63
PTPRF-202ENST00000372405 CCDC184Q52MB2 194 aa18.98■□□□□ 0.63
PTPRF-202ENST00000372405 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
PTPRF-202ENST00000372405 SBNO2Q9Y2G9 1366 aa18.98■□□□□ 0.63
PTPRF-202ENST00000372405 CEBPAP49715 358 aaPredicted RBP18.97■□□□□ 0.63
PTPRF-202ENST00000372405 ALKQ9UM73 1620 aa18.97■□□□□ 0.63
PTPRF-202ENST00000372405 PER1O15534 1290 aaPredicted RBP18.96■□□□□ 0.63
PTPRF-202ENST00000372405 SETD1AO15047 1707 aaKnown RBP18.96■□□□□ 0.63
PTPRF-202ENST00000372405 CENPJQ9HC77 1338 aaPredicted RBP18.95■□□□□ 0.62
PTPRF-202ENST00000372405 NRXN3Q9Y4C0 1643 aa18.94■□□□□ 0.62
PTPRF-202ENST00000372405 PTPRMP28827 1452 aa18.93■□□□□ 0.62
PTPRF-202ENST00000372405 CNGB1Q14028 1251 aaPredicted RBP18.93■□□□□ 0.62
PTPRF-202ENST00000372405 PANK3Q9H999 370 aa18.93■□□□□ 0.62
PTPRF-202ENST00000372405 CDCA8Q53HL2 280 aa18.92■□□□□ 0.62
PTPRF-202ENST00000372405 NLRP1Q9C000 1473 aa18.91■□□□□ 0.62
PTPRF-202ENST00000372405 YTHDC2Q9H6S0 1430 aaKnown RBP18.89■□□□□ 0.62
PTPRF-202ENST00000372405 SLC24A1O60721 1099 aa18.89■□□□□ 0.61
PTPRF-202ENST00000372405 TMEM2Q9UHN6 1383 aa18.88■□□□□ 0.61
PTPRF-202ENST00000372405 RIMS1Q86UR5 1692 aaKnown RBP18.87■□□□□ 0.61
PTPRF-202ENST00000372405 TULP4Q9NRJ4 1543 aa18.86■□□□□ 0.61
PTPRF-202ENST00000372405 MRS2Q9HD23 443 aa18.86■□□□□ 0.61
PTPRF-202ENST00000372405 STK26Q9P289 416 aa18.86■□□□□ 0.61
PTPRF-202ENST00000372405 PARD3Q8TEW0 1356 aa18.86■□□□□ 0.61
PTPRF-202ENST00000372405 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.86■□□□□ 0.61
PTPRF-202ENST00000372405 KTN1Q86UP2 1357 aaKnown RBP18.86■□□□□ 0.61
PTPRF-202ENST00000372405 PLPPR3Q6T4P5 718 aa18.85■□□□□ 0.61
PTPRF-202ENST00000372405 ADAMTSL3P82987 1691 aa18.85■□□□□ 0.61
PTPRF-202ENST00000372405 RALBP1Q15311 655 aa18.83■□□□□ 0.61
PTPRF-202ENST00000372405 METP08581 1390 aa18.81■□□□□ 0.6
PTPRF-202ENST00000372405 SAFB2Q14151 953 aaKnown RBP eCLIP18.81■□□□□ 0.6
PTPRF-202ENST00000372405 MYBBP1AQ9BQG0 1328 aaKnown RBP18.81■□□□□ 0.6
PTPRF-202ENST00000372405 DLC1Q96QB1 1528 aa18.81■□□□□ 0.6
PTPRF-202ENST00000372405 ARHGAP23Q9P227 1491 aa18.81■□□□□ 0.6
PTPRF-202ENST00000372405 LTKP29376 864 aa18.81■□□□□ 0.6
PTPRF-202ENST00000372405 SLIT1O75093 1534 aa18.8■□□□□ 0.6
PTPRF-202ENST00000372405 SCAF1Q9H7N4 1312 aaKnown RBP18.8■□□□□ 0.6
PTPRF-202ENST00000372405 LRPPRCP42704 1394 aaKnown RBP18.8■□□□□ 0.6
PTPRF-202ENST00000372405 CC2D1BQ5T0F9 858 aaKnown RBP18.8■□□□□ 0.6
PTPRF-202ENST00000372405 PRAM1Q96QH2 718 aa18.8■□□□□ 0.6
PTPRF-202ENST00000372405 HDGFP51858 240 aaKnown RBP18.79■□□□□ 0.6
PTPRF-202ENST00000372405 AMER1Q5JTC6 1135 aaPredicted RBP18.79■□□□□ 0.6
PTPRF-202ENST00000372405 ADAMTS13Q76LX8 1427 aa18.78■□□□□ 0.6
PTPRF-202ENST00000372405 FAM9BQ8IZU0 186 aa18.78■□□□□ 0.6
PTPRF-202ENST00000372405 EVC2Q86UK5 1308 aa18.78■□□□□ 0.6
PTPRF-202ENST00000372405 CARD14Q9BXL6 1004 aa18.77■□□□□ 0.6
PTPRF-202ENST00000372405 KNSTRNQ9Y448 316 aa18.77■□□□□ 0.6
PTPRF-202ENST00000372405 ABCC11Q96J66 1382 aa18.77■□□□□ 0.6
PTPRF-202ENST00000372405 BRD4O60885 1362 aaPredicted RBP18.77■□□□□ 0.59
PTPRF-202ENST00000372405 KNDC1Q76NI1 1749 aa18.77■□□□□ 0.59
PTPRF-202ENST00000372405 PLEKHG1Q9ULL1 1385 aa18.77■□□□□ 0.59
PTPRF-202ENST00000372405 PUS7Q96PZ0 661 aaKnown RBP18.76■□□□□ 0.59
PTPRF-202ENST00000372405 CEP170BQ9Y4F5 1589 aaPredicted RBP18.76■□□□□ 0.59
PTPRF-202ENST00000372405 PLEKHH1Q9ULM0 1364 aa18.75■□□□□ 0.59
PTPRF-202ENST00000372405 SLC12A5Q9H2X9 1139 aa18.75■□□□□ 0.59
PTPRF-202ENST00000372405 MINK1Q8N4C8 1332 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms