RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 MATR3P43243 847 aaKnown RBP eCLIP11.96□□□□□ -0.493e-8■■■□□ 14.8
CHD3-202ENST00000358181 ROCK2O75116 1388 aaKnown RBP11.96□□□□□ -0.49
CHD3-202ENST00000358181 IPO7O95373 1038 aaKnown RBP11.96□□□□□ -0.5
CHD3-202ENST00000358181 ZNF771Q7L3S4 317 aaPredicted RBP11.95□□□□□ -0.5
CHD3-202ENST00000358181 BECN2A8MW95 431 aa11.95□□□□□ -0.5
CHD3-202ENST00000358181 TTC5Q8N0Z6 440 aa11.95□□□□□ -0.5
CHD3-202ENST00000358181 ERICH2A1L162 156 aa11.94□□□□□ -0.5
CHD3-202ENST00000358181 RBM19Q9Y4C8 960 aaKnown RBP11.94□□□□□ -0.5
CHD3-202ENST00000358181 STK11IPQ8N1F8 1099 aa11.94□□□□□ -0.5
CHD3-202ENST00000358181 TIMELESSQ9UNS1 1208 aa11.94□□□□□ -0.5
CHD3-202ENST00000358181 HMGN5P82970 282 aaKnown RBP11.94□□□□□ -0.5
CHD3-202ENST00000358181 CLUAP1Q96AJ1 413 aa11.94□□□□□ -0.5
CHD3-202ENST00000358181 RRP7AQ9Y3A4 280 aaKnown RBP11.94□□□□□ -0.5
CHD3-202ENST00000358181 CALD1Q05682 793 aaKnown RBP11.93□□□□□ -0.5
CHD3-202ENST00000358181 WDR78Q5VTH9 848 aa11.93□□□□□ -0.5
CHD3-202ENST00000358181 SMC4Q9NTJ3 1288 aa11.93□□□□□ -0.5
CHD3-202ENST00000358181 MPHOSPH10O00566 681 aaKnown RBP11.92□□□□□ -0.5
CHD3-202ENST00000358181 RBM5P52756 815 aaKnown RBP eCLIP11.92□□□□□ -0.5
CHD3-202ENST00000358181 TRAK1Q9UPV9 953 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 GPS2Q13227 327 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 GRM1Q13255 1194 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 ANKRD20A12PQ8NF67 263 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 NUP155O75694 1391 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 HMMRO75330 724 aa11.92□□□□□ -0.5
CHD3-202ENST00000358181 NACADO15069 1562 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 CBX1P83916 185 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 OFD1O75665 1012 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 CYB5RLQ6IPT4 315 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 MPHOSPH9Q99550 1183 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 ANO2Q9NQ90 1003 aa11.91□□□□□ -0.5
CHD3-202ENST00000358181 CAGE1Q8TC20 777 aa11.9□□□□□ -0.5
CHD3-202ENST00000358181 ARHGAP35Q9NRY4 1499 aa11.9□□□□□ -0.5
CHD3-202ENST00000358181 NUTM2BA6NNL0 878 aaPredicted RBP11.9□□□□□ -0.5
CHD3-202ENST00000358181 NUTM2EB1AL46 878 aaPredicted RBP11.9□□□□□ -0.5
CHD3-202ENST00000358181 TCERG1O14776 1098 aaKnown RBP11.9□□□□□ -0.5
CHD3-202ENST00000358181 NUTM2AQ8IVF1 878 aaPredicted RBP11.9□□□□□ -0.5
CHD3-202ENST00000358181 KIF3AQ9Y496 699 aa11.9□□□□□ -0.5
CHD3-202ENST00000358181 ELL2O00472 640 aaPredicted RBP11.89□□□□□ -0.51
CHD3-202ENST00000358181 CPLX1O14810 134 aa11.89□□□□□ -0.51
CHD3-202ENST00000358181 SYCP1Q15431 976 aa11.89□□□□□ -0.51
CHD3-202ENST00000358181 CHMP4CQ96CF2 233 aa11.89□□□□□ -0.51
CHD3-202ENST00000358181 PDILTQ8N807 584 aa11.88□□□□□ -0.51
CHD3-202ENST00000358181 ZNF428Q96B54 188 aa11.88□□□□□ -0.51
CHD3-202ENST00000358181 WASHC2CQ9Y4E1 1318 aa11.88□□□□□ -0.51
CHD3-202ENST00000358181 RDXP35241 583 aaKnown RBP11.88□□□□□ -0.51
CHD3-202ENST00000358181 PKNOX2Q96KN3 472 aa11.88□□□□□ -0.51
CHD3-202ENST00000358181 CCDC88BA6NC98 1476 aa11.88□□□□□ -0.51
CHD3-202ENST00000358181 ENOX2Q16206 610 aaKnown RBP11.88□□□□□ -0.51
CHD3-202ENST00000358181 GOLGA6L3A6NEY3 463 aa11.87□□□□□ -0.51
CHD3-202ENST00000358181 SEPT7Q16181 437 aaKnown RBP11.87□□□□□ -0.51
CHD3-202ENST00000358181 PUS7Q96PZ0 661 aaKnown RBP11.87□□□□□ -0.51
CHD3-202ENST00000358181 PDCL3Q9H2J4 239 aa11.87□□□□□ -0.51
CHD3-202ENST00000358181 PHF14O94880 888 aa11.87□□□□□ -0.51
CHD3-202ENST00000358181 SETD5Q9C0A6 1442 aa11.87□□□□□ -0.51
CHD3-202ENST00000358181 LMOD3Q0VAK6 560 aa11.87□□□□□ -0.51
CHD3-202ENST00000358181 SEPT11Q9NVA2 429 aaKnown RBP11.87□□□□□ -0.51
CHD3-202ENST00000358181 RWDD1Q9H446 243 aaPredicted RBP11.87□□□□□ -0.51
CHD3-202ENST00000358181 KRT18P05783 430 aaKnown RBP11.86□□□□□ -0.51
CHD3-202ENST00000358181 ZRSR2Q15696 482 aaKnown RBP11.86□□□□□ -0.51
CHD3-202ENST00000358181 BCL2L13Q9BXK5 485 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 ZHX3Q9H4I2 956 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 HSP90AB4PQ58FF6 505 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 KTN1Q86UP2 1357 aaKnown RBP11.86□□□□□ -0.51
CHD3-202ENST00000358181 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 CDR1P51861 262 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 PIP4K2BP78356 416 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 TRDNQ13061 729 aa11.86□□□□□ -0.51
CHD3-202ENST00000358181 C9orf78Q9NZ63 289 aaPredicted RBP11.85□□□□□ -0.51
CHD3-202ENST00000358181 FHOD3Q2V2M9 1422 aa11.85□□□□□ -0.51
CHD3-202ENST00000358181 BAZ1AQ9NRL2 1556 aaPredicted RBP11.85□□□□□ -0.51
CHD3-202ENST00000358181 CCDC173Q0VFZ6 552 aa11.85□□□□□ -0.51
CHD3-202ENST00000358181 CCDC191Q8NCU4 936 aa11.85□□□□□ -0.51
CHD3-202ENST00000358181 MROH2BQ7Z745 1585 aa11.85□□□□□ -0.51
CHD3-202ENST00000358181 RAB3GAP2Q9H2M9 1393 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 WIZO95785 1651 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 CDK5RAP3Q96JB5 506 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 BCCIPQ9P287 314 aaKnown RBP eCLIP11.84□□□□□ -0.51
CHD3-202ENST00000358181 TTLL12Q14166 644 aaPredicted RBP11.84□□□□□ -0.51
CHD3-202ENST00000358181 DIAPH3Q9NSV4 1193 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 HDAC5Q9UQL6 1122 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 STAC3Q96MF2 364 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 ST18O60284 1047 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 MAP3K9P80192 1104 aa11.84□□□□□ -0.51
CHD3-202ENST00000358181 SCLT1Q96NL6 688 aa11.83□□□□□ -0.52
CHD3-202ENST00000358181 BRPF1P55201 1214 aaPredicted RBP11.83□□□□□ -0.52
CHD3-202ENST00000358181 BICD2Q8TD16 824 aa11.83□□□□□ -0.52
CHD3-202ENST00000358181 ECM2O94769 699 aaPredicted RBP11.83□□□□□ -0.52
CHD3-202ENST00000358181 WASHC4Q2M389 1173 aa11.83□□□□□ -0.52
CHD3-202ENST00000358181 HSP90AB3PQ58FF7 597 aa11.83□□□□□ -0.52
CHD3-202ENST00000358181 AIMP1Q12904 312 aaKnown RBP11.83□□□□□ -0.52
CHD3-202ENST00000358181 CPLX2Q6PUV4 134 aaKnown RBP11.83□□□□□ -0.52
CHD3-202ENST00000358181 NEUROD6Q96NK8 337 aa11.82□□□□□ -0.52
CHD3-202ENST00000358181 HOOK1Q9UJC3 728 aaKnown RBP11.82□□□□□ -0.52
CHD3-202ENST00000358181 NEXNQ0ZGT2 675 aa11.82□□□□□ -0.52
CHD3-202ENST00000358181 EFCAB2Q5VUJ9 269 aa11.82□□□□□ -0.52
CHD3-202ENST00000358181 RCAN3Q9UKA8 241 aa11.81□□□□□ -0.52
CHD3-202ENST00000358181 ATP2B1P20020 1258 aa11.81□□□□□ -0.52
CHD3-202ENST00000358181 TEFQ10587 303 aa11.81□□□□□ -0.52
CHD3-202ENST00000358181 CARMIL2Q6F5E8 1435 aa11.81□□□□□ -0.52
CHD3-202ENST00000358181 SSR1P43307 286 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms