RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 REC8O95072 547 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 CFDP1Q9UEE9 299 aaPredicted RBP21.31■■□□□ 1
SMAD4-201ENST00000342988 RNF20Q5VTR2 975 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 KIF3BO15066 747 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 FAM43AQ8N2R8 423 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 DESP17661 470 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 SPATA24Q86W54 205 aa21.31■■□□□ 1
SMAD4-201ENST00000342988 RAD21O60216 631 aa21.3■■□□□ 1
SMAD4-201ENST00000342988 BICD2Q8TD16 824 aa21.3■■□□□ 1
SMAD4-201ENST00000342988 FOXD4L5Q5VV16 416 aaPredicted RBP21.29■■□□□ 1
SMAD4-201ENST00000342988 FOXD4L4Q8WXT5 416 aaPredicted RBP21.29■■□□□ 1
SMAD4-201ENST00000342988 IQCEQ6IPM2 695 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 CFAP57Q96MR6 1250 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 VPS37DQ86XT2 251 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 STAMBPO95630 424 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 GIMAP7Q8NHV1 300 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 CCER2I3L3R5 266 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 XBP1P17861 261 aa21.28■■□□□ 1
SMAD4-201ENST00000342988 DHX16O60231 1041 aaKnown RBP21.27■■□□□ 1
SMAD4-201ENST00000342988 RALBP1Q15311 655 aa21.27■■□□□ 1
SMAD4-201ENST00000342988 CCAR1Q8IX12 1150 aaKnown RBP21.27■■□□□ 1
SMAD4-201ENST00000342988 SLC26A8Q96RN1 970 aa21.27■■□□□ 1
SMAD4-201ENST00000342988 CCDC91Q7Z6B0 441 aa21.27■■□□□ 1
SMAD4-201ENST00000342988 CCDC97Q96F63 343 aaPredicted RBP21.27■□□□□ 0.99
SMAD4-201ENST00000342988 FOXD4L1Q9NU39 408 aa21.27■□□□□ 0.99
SMAD4-201ENST00000342988 HMGN5P82970 282 aaKnown RBP21.26■□□□□ 0.99
SMAD4-201ENST00000342988 SLC4A10Q6U841 1118 aa21.26■□□□□ 0.99
SMAD4-201ENST00000342988 EIF3JO75822 258 aaKnown RBP21.25■□□□□ 0.99
SMAD4-201ENST00000342988 BCCIPQ9P287 314 aaKnown RBP eCLIP21.25■□□□□ 0.99
SMAD4-201ENST00000342988 CCDC39Q9UFE4 941 aa21.25■□□□□ 0.99
SMAD4-201ENST00000342988 TRIM21P19474 475 aaKnown RBP21.24■□□□□ 0.99
SMAD4-201ENST00000342988 U2AF1L5P0DN76 240 aaPredicted RBP21.24■□□□□ 0.99
SMAD4-201ENST00000342988 U2AF1Q01081 240 aaKnown RBP eCLIP21.24■□□□□ 0.99
SMAD4-201ENST00000342988 RILPL2Q969X0 211 aa21.24■□□□□ 0.99
SMAD4-201ENST00000342988 CCDC73Q6ZRK6 1079 aa21.24■□□□□ 0.99
SMAD4-201ENST00000342988 KIF7Q2M1P5 1343 aa21.24■□□□□ 0.99
SMAD4-201ENST00000342988 ROCK1Q13464 1354 aa21.23■□□□□ 0.99
SMAD4-201ENST00000342988 LETM1O95202 739 aaPredicted RBP21.23■□□□□ 0.99
SMAD4-201ENST00000342988 MAGEC2Q9UBF1 373 aaPredicted RBP21.23■□□□□ 0.99
SMAD4-201ENST00000342988 CCDC9Q9Y3X0 531 aaKnown RBP21.23■□□□□ 0.99
SMAD4-201ENST00000342988 NFXL1Q6ZNB6 911 aa21.22■□□□□ 0.99
SMAD4-201ENST00000342988 TMEM132AQ24JP5 1023 aa21.21■□□□□ 0.99
SMAD4-201ENST00000342988 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
SMAD4-201ENST00000342988 CEP63Q96MT8 703 aa21.21■□□□□ 0.99
SMAD4-201ENST00000342988 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.21■□□□□ 0.99
SMAD4-201ENST00000342988 HSP90AB4PQ58FF6 505 aa21.21■□□□□ 0.99
SMAD4-201ENST00000342988 PIP4K2AP48426 406 aaPredicted RBP21.2■□□□□ 0.98
SMAD4-201ENST00000342988 FILIP1LQ4L180 1135 aa21.2■□□□□ 0.98
SMAD4-201ENST00000342988 CENPJQ9HC77 1338 aaPredicted RBP21.2■□□□□ 0.98
SMAD4-201ENST00000342988 GRIPAP1Q4V328 841 aa21.2■□□□□ 0.98
SMAD4-201ENST00000342988 ZNHIT6Q9NWK9 470 aaKnown RBP21.19■□□□□ 0.98
SMAD4-201ENST00000342988 CCDC112Q8NEF3 446 aa21.18■□□□□ 0.98
SMAD4-201ENST00000342988 TXLNAP40222 546 aa21.18■□□□□ 0.98
SMAD4-201ENST00000342988 PDILTQ8N807 584 aa21.18■□□□□ 0.98
SMAD4-201ENST00000342988 DDX23Q9BUQ8 820 aaKnown RBP21.17■□□□□ 0.98
SMAD4-201ENST00000342988 DCAF11Q8TEB1 546 aa21.16■□□□□ 0.98
SMAD4-201ENST00000342988 DNAI2Q9GZS0 605 aa21.16■□□□□ 0.98
SMAD4-201ENST00000342988 SKIDA1Q1XH10 827 aa21.15■□□□□ 0.98
SMAD4-201ENST00000342988 ROCK2O75116 1388 aaKnown RBP21.15■□□□□ 0.98
SMAD4-201ENST00000342988 CAVIN1Q6NZI2 390 aaKnown RBP21.15■□□□□ 0.98
SMAD4-201ENST00000342988 NUCB2P80303 420 aa21.14■□□□□ 0.98
SMAD4-201ENST00000342988 TERF2IPQ9NYB0 399 aa21.14■□□□□ 0.98
SMAD4-201ENST00000342988 FOXD4L6Q3SYB3 417 aaPredicted RBP21.14■□□□□ 0.97
SMAD4-201ENST00000342988 FOXD4L3Q6VB84 417 aaPredicted RBP21.14■□□□□ 0.97
SMAD4-201ENST00000342988 ERLIN1O75477 346 aa21.14■□□□□ 0.97
SMAD4-201ENST00000342988 CENPQQ7L2Z9 268 aaPredicted RBP21.14■□□□□ 0.97
SMAD4-201ENST00000342988 ANO2Q9NQ90 1003 aa21.13■□□□□ 0.97
SMAD4-201ENST00000342988 CDK5RAP3Q96JB5 506 aa21.13■□□□□ 0.97
SMAD4-201ENST00000342988 DDX11Q96FC9 970 aa21.13■□□□□ 0.97
SMAD4-201ENST00000342988 GOLGA6L10A0A0M3HER8 536 aa21.12■□□□□ 0.97
SMAD4-201ENST00000342988 EEA1Q15075 1411 aa21.12■□□□□ 0.97
SMAD4-201ENST00000342988 WASHC2AQ641Q2 1341 aa21.12■□□□□ 0.97
SMAD4-201ENST00000342988 CCDC175P0C221 793 aa21.11■□□□□ 0.97
SMAD4-201ENST00000342988 CCDC181Q5TID7 509 aa21.11■□□□□ 0.97
SMAD4-201ENST00000342988 FAM161AQ3B820 660 aa21.11■□□□□ 0.97
SMAD4-201ENST00000342988 ANKRD18BA2A2Z9 1011 aa21.1■□□□□ 0.97
SMAD4-201ENST00000342988 RBM33Q96EV2 1170 aaKnown RBP21.09■□□□□ 0.97
SMAD4-201ENST00000342988 DCAF8L1A6NGE4 600 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 TTLL5Q6EMB2 1281 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 LRRCC1Q9C099 1032 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 SMC3Q9UQE7 1217 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 STIM1Q13586 685 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 TAX1BP1Q86VP1 789 aa21.09■□□□□ 0.97
SMAD4-201ENST00000342988 NASPP49321 788 aaPredicted RBP21.08■□□□□ 0.97
SMAD4-201ENST00000342988 CCDC146Q8IYE0 955 aa21.08■□□□□ 0.97
SMAD4-201ENST00000342988 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.08■□□□□ 0.96
SMAD4-201ENST00000342988 NEBLO76041 1014 aa21.07■□□□□ 0.96
SMAD4-201ENST00000342988 RALYLQ86SE5 291 aaKnown RBP21.07■□□□□ 0.96
SMAD4-201ENST00000342988 TIMELESSQ9UNS1 1208 aa21.07■□□□□ 0.96
SMAD4-201ENST00000342988 FHAD1B1AJZ9 1412 aa21.07■□□□□ 0.96
SMAD4-201ENST00000342988 CENPHQ9H3R5 247 aa21.07■□□□□ 0.96
SMAD4-201ENST00000342988 C9orf78Q9NZ63 289 aaPredicted RBP21.07■□□□□ 0.96
SMAD4-201ENST00000342988 NINLQ9Y2I6 1382 aa21.07■□□□□ 0.96
SMAD4-201ENST00000342988 C1orf141Q5JVX7 400 aa21.06■□□□□ 0.96
SMAD4-201ENST00000342988 ANKRD45Q5TZF3 282 aa21.06■□□□□ 0.96
SMAD4-201ENST00000342988 PDE3BQ13370 1112 aa21.06■□□□□ 0.96
SMAD4-201ENST00000342988 KINO60870 393 aaKnown RBP21.06■□□□□ 0.96
SMAD4-201ENST00000342988 ZWINTO95229 277 aa21.05■□□□□ 0.96
SMAD4-201ENST00000342988 SART3Q15020 963 aaKnown RBP21.04■□□□□ 0.96
SMAD4-201ENST00000342988 AMPHP49418 695 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms