RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 TRIM34Q9BYJ4 488 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 MRVI1Q9Y6F6 885 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 SMARCA2P51531 1590 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 GOLIM4O00461 696 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 TMEM132AQ24JP5 1023 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 HSCBQ8IWL3 235 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 HSP90AB1P08238 724 aaKnown RBP5.1□□□□□ -1.59
NEDD4-201ENST00000338963 RRBP1Q9P2E9 1410 aaKnown RBP5.1□□□□□ -1.59
NEDD4-201ENST00000338963 FAM210AQ96ND0 272 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 RCAN3Q9UKA8 241 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 CBX1P83916 185 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 SETDB1Q15047 1291 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 PRKRIP1Q9H875 184 aaPredicted RBP5.1□□□□□ -1.59
NEDD4-201ENST00000338963 MAP2K1Q02750 393 aaPredicted RBP5.1□□□□□ -1.59
NEDD4-201ENST00000338963 TXLNBQ8N3L3 684 aa5.1□□□□□ -1.59
NEDD4-201ENST00000338963 EIF4G2P78344 907 aaKnown RBP eCLIP5.09□□□□□ -1.59
NEDD4-201ENST00000338963 ZKSCAN8Q15776 578 aaPredicted RBP5.09□□□□□ -1.59
NEDD4-201ENST00000338963 CC2D2BQ6DHV5 1058 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 NBPF3Q9H094 633 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.09□□□□□ -1.597e-8■■■■■ 186.3
NEDD4-201ENST00000338963 SETD5Q9C0A6 1442 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 ROCK2O75116 1388 aaKnown RBP5.09□□□□□ -1.59
NEDD4-201ENST00000338963 MYCNP04198 464 aaPredicted RBP5.09□□□□□ -1.59
NEDD4-201ENST00000338963 CCNB3Q8WWL7 1395 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 ICE2Q659A1 982 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 NUTM1Q86Y26 1132 aa5.09□□□□□ -1.59
NEDD4-201ENST00000338963 HTATSF1O43719 755 aaKnown RBP5.09□□□□□ -1.6
NEDD4-201ENST00000338963 KRT222Q8N1A0 295 aa5.09□□□□□ -1.6
NEDD4-201ENST00000338963 MAFGO15525 162 aa5.09□□□□□ -1.6
NEDD4-201ENST00000338963 ZNF853P0CG23 659 aa5.09□□□□□ -1.6
NEDD4-201ENST00000338963 INSRP06213 1382 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 NACADO15069 1562 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 TMC1Q8TDI8 760 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 DONSONQ9NYP3 566 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 TULP2O00295 520 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 CFAP44Q96MT7 982 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 A0A1B0GUL7 405 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 E9PSI1 815 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 NBPF10Q6P3W6 841 aaKnown RBP5.08□□□□□ -1.6
NEDD4-201ENST00000338963 EGFL6Q8IUX8 553 aa5.08□□□□□ -1.6
NEDD4-201ENST00000338963 BRPF1P55201 1214 aaPredicted RBP5.08□□□□□ -1.6
NEDD4-201ENST00000338963 TPM4P67936 248 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 EXOC6Q8TAG9 804 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 SYAP1Q96A49 352 aaPredicted RBP5.07□□□□□ -1.6
NEDD4-201ENST00000338963 SETSIPP0DME0 302 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 GUCY2CP25092 1073 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 SLC4A3P48751 1232 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 KIF16BQ96L93 1317 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 FAM107BQ9H098 131 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 MED4Q9NPJ6 270 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 BAZ1BQ9UIG0 1483 aaKnown RBP5.07□□□□□ -1.6
NEDD4-201ENST00000338963 ERCC3P19447 782 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 CASQ1P31415 396 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 SARNPP82979 210 aaKnown RBP5.07□□□□□ -1.6
NEDD4-201ENST00000338963 SUDS3Q9H7L9 328 aaPredicted RBP5.07□□□□□ -1.6
NEDD4-201ENST00000338963 CCDC196A0A1B0GTZ2 297 aa5.07□□□□□ -1.6
NEDD4-201ENST00000338963 MAPK8IP2Q13387 824 aaPredicted RBP5.07□□□□□ -1.6
NEDD4-201ENST00000338963 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.06□□□□□ -1.6
NEDD4-201ENST00000338963 FAM184AQ8NB25 1140 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 RAD50Q92878 1312 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 REC8O95072 547 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 OTUD6BQ8N6M0 293 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 PANK2Q9BZ23 570 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 V9GYY5 206 aaPredicted RBP5.06□□□□□ -1.6
NEDD4-201ENST00000338963 EIF3JO75822 258 aaKnown RBP5.06□□□□□ -1.6
NEDD4-201ENST00000338963 HDAC1Q13547 482 aaPredicted RBP5.06□□□□□ -1.6
NEDD4-201ENST00000338963 ATP6V1AP38606 617 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 GZF1Q9H116 711 aaPredicted RBP5.06□□□□□ -1.6
NEDD4-201ENST00000338963 UVSSAQ2YD98 709 aa5.06□□□□□ -1.6
NEDD4-201ENST00000338963 KLHL40Q2TBA0 621 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 PPP1R12AO14974 1030 aaPredicted RBP5.05□□□□□ -1.6
NEDD4-201ENST00000338963 RSPH14Q9UHP6 348 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 MPHOSPH10O00566 681 aaKnown RBP5.05□□□□□ -1.6
NEDD4-201ENST00000338963 ARID4AP29374 1257 aaPredicted RBP5.05□□□□□ -1.6
NEDD4-201ENST00000338963 LRCH2Q5VUJ6 765 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 ABCC9O60706 1549 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 MUM1L1Q5H9M0 696 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 H0YHG0 523 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 IVLP07476 585 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 SIN3AQ96ST3 1273 aa5.05□□□□□ -1.6
NEDD4-201ENST00000338963 FEZ2Q9UHY8 353 aaPredicted RBP5.05□□□□□ -1.6
NEDD4-201ENST00000338963 ZRSR1Q15695 479 aaKnown RBP5.04□□□□□ -1.6
NEDD4-201ENST00000338963 AK7Q96M32 723 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 TMX4Q9H1E5 349 aaPredicted RBP5.04□□□□□ -1.6
NEDD4-201ENST00000338963 ERBB4Q15303 1308 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 CCP110O43303 1012 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 PEG3Q9GZU2 1588 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 TERF2Q15554 542 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 C8orf34Q49A92 452 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 PDLIM2Q96JY6 352 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 ARGLU1Q9NWB6 273 aaPredicted RBP5.04□□□□□ -1.6
NEDD4-201ENST00000338963 RAB3GAP2Q9H2M9 1393 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 HSP90AB4PQ58FF6 505 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 PAXBP1Q9Y5B6 917 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 NCOA2Q15596 1464 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 PES1O00541 588 aaKnown RBP5.04□□□□□ -1.6
NEDD4-201ENST00000338963 NUCB2P80303 420 aa5.04□□□□□ -1.6
NEDD4-201ENST00000338963 TUBB4AP04350 444 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 ZNF445P59923 1031 aa5.03□□□□□ -1.6
NEDD4-201ENST00000338963 XPCQ01831 940 aaPredicted RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms