RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ANO2Q9NQ90 1003 aa12.64□□□□□ -0.39
CLIP1-201ENST00000302528 VPS37DQ86XT2 251 aa12.63□□□□□ -0.39
CLIP1-201ENST00000302528 PLCD4Q9BRC7 762 aa12.63□□□□□ -0.39
CLIP1-201ENST00000302528 EPS15P42566 896 aa12.63□□□□□ -0.39
CLIP1-201ENST00000302528 EIF3AQ14152 1382 aaKnown RBP12.63□□□□□ -0.39
CLIP1-201ENST00000302528 ERICH2A1L162 156 aa12.63□□□□□ -0.39
CLIP1-201ENST00000302528 PKD2Q13563 968 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 SASS6Q6UVJ0 657 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 TIMELESSQ9UNS1 1208 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 GSE1Q14687 1217 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 CAGE1Q8TC20 777 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 IFT57Q9NWB7 429 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 RUSC2Q8N2Y8 1516 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 NEXNQ0ZGT2 675 aa12.62□□□□□ -0.39
CLIP1-201ENST00000302528 C1orf141Q5JVX7 400 aa12.61□□□□□ -0.39
CLIP1-201ENST00000302528 MYO6Q9UM54 1294 aa12.61□□□□□ -0.39
CLIP1-201ENST00000302528 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
CLIP1-201ENST00000302528 SAFBQ15424 915 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLIP1-201ENST00000302528 ZRSR2Q15696 482 aaKnown RBP12.6□□□□□ -0.39
CLIP1-201ENST00000302528 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLIP1-201ENST00000302528 EID1Q9Y6B2 187 aa12.6□□□□□ -0.39
CLIP1-201ENST00000302528 ELL2O00472 640 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-201ENST00000302528 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-201ENST00000302528 REC8O95072 547 aa12.59□□□□□ -0.39
CLIP1-201ENST00000302528 SLC4A3P48751 1232 aa12.59□□□□□ -0.39
CLIP1-201ENST00000302528 SKIDA1Q1XH10 827 aa12.59□□□□□ -0.39
CLIP1-201ENST00000302528 ERCC4Q92889 916 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-201ENST00000302528 CWC15Q9P013 229 aaKnown RBP12.59□□□□□ -0.39
CLIP1-201ENST00000302528 VPS37CA5D8V6 355 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-201ENST00000302528 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
CLIP1-201ENST00000302528 CCDC73Q6ZRK6 1079 aa12.59□□□□□ -0.39
CLIP1-201ENST00000302528 IFIT2P09913 472 aaKnown RBP12.59□□□□□ -0.39
CLIP1-201ENST00000302528 C9orf78Q9NZ63 289 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-201ENST00000302528 ERCC6Q03468 1493 aa12.58□□□□□ -0.39
CLIP1-201ENST00000302528 EVA1CP58658 441 aa12.58□□□□□ -0.4
CLIP1-201ENST00000302528 TTC5Q8N0Z6 440 aa12.58□□□□□ -0.4
CLIP1-201ENST00000302528 FAM161AQ3B820 660 aa12.58□□□□□ -0.4
CLIP1-201ENST00000302528 SETD5Q9C0A6 1442 aa12.58□□□□□ -0.4
CLIP1-201ENST00000302528 NUTM2FA1L443 756 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 PDE3BQ13370 1112 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 PDILTQ8N807 584 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 BCL11BQ9C0K0 894 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-201ENST00000302528 NEFHP12036 1026 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 TSPYL1Q9H0U9 437 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 FOSBP53539 338 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 TEFQ10587 303 aa12.57□□□□□ -0.4
CLIP1-201ENST00000302528 TMEM132AQ24JP5 1023 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 OLFM4Q6UX06 510 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 CENPQQ7L2Z9 268 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-201ENST00000302528 RRP7AQ9Y3A4 280 aaKnown RBP12.56□□□□□ -0.4
CLIP1-201ENST00000302528 TTLL5Q6EMB2 1281 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 RAPGEF2Q9Y4G8 1499 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 WWC2Q6AWC2 1192 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 TSHZ2Q9NRE2 1034 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 SMC3Q9UQE7 1217 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 DHX57Q6P158 1386 aaKnown RBP12.56□□□□□ -0.4
CLIP1-201ENST00000302528 FOXD1Q16676 465 aa12.56□□□□□ -0.4
CLIP1-201ENST00000302528 CGNL1Q0VF96 1302 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 HSP90AB3PQ58FF7 597 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 SMARCA4P51532 1647 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 FHAD1B1AJZ9 1412 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 BCL2L13Q9BXK5 485 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 RAB3GAP2Q9H2M9 1393 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 EIF2S2P20042 333 aaKnown RBP12.55□□□□□ -0.4
CLIP1-201ENST00000302528 FAM43AQ8N2R8 423 aa12.55□□□□□ -0.4
CLIP1-201ENST00000302528 ANKRD62A6NC57 917 aa12.54□□□□□ -0.4
CLIP1-201ENST00000302528 ZKSCAN2Q63HK3 967 aa12.54□□□□□ -0.4
CLIP1-201ENST00000302528 KLHL34Q8N239 644 aa12.54□□□□□ -0.4
CLIP1-201ENST00000302528 BRMS1Q9HCU9 246 aa12.54□□□□□ -0.4
CLIP1-201ENST00000302528 NAT10Q9H0A0 1025 aaKnown RBP12.54□□□□□ -0.4
CLIP1-201ENST00000302528 NLRP13Q86W25 1043 aa12.54□□□□□ -0.4
CLIP1-201ENST00000302528 NUTM2DQ5VT03 806 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-201ENST00000302528 RBM33Q96EV2 1170 aaKnown RBP12.53□□□□□ -0.4
CLIP1-201ENST00000302528 PDE4AP27815 886 aa12.52□□□□□ -0.4
CLIP1-201ENST00000302528 G3BP1Q13283 466 aaKnown RBP eCLIP12.52□□□□□ -0.4
CLIP1-201ENST00000302528 RALYLQ86SE5 291 aaKnown RBP12.52□□□□□ -0.4
CLIP1-201ENST00000302528 SYCP1Q15431 976 aa12.52□□□□□ -0.41
CLIP1-201ENST00000302528 AXDND1Q5T1B0 1012 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-201ENST00000302528 ANKRD18AQ8IVF6 992 aa12.52□□□□□ -0.41
CLIP1-201ENST00000302528 CARMIL1Q5VZK9 1371 aa12.52□□□□□ -0.41
CLIP1-201ENST00000302528 IKQ13123 557 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-201ENST00000302528 SYTL4Q96C24 671 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-201ENST00000302528 FYB1O15117 783 aa12.51□□□□□ -0.41
CLIP1-201ENST00000302528 XBP1P17861 261 aa12.51□□□□□ -0.41
CLIP1-201ENST00000302528 SEPT7Q16181 437 aaKnown RBP12.51□□□□□ -0.41
CLIP1-201ENST00000302528 PHLDB1Q86UU1 1377 aa12.51□□□□□ -0.41
CLIP1-201ENST00000302528 CCDC66A2RUB6 948 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 DDX58O95786 925 aaKnown RBP12.5□□□□□ -0.41
CLIP1-201ENST00000302528 CHMP5Q9NZZ3 219 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 CUX2O14529 1486 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 MTMR7Q9Y216 660 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 SMARCA2P51531 1590 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 ERLIN2O94905 339 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 LEKR1Q6ZMV7 388 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 SDF4Q9BRK5 362 aa12.5□□□□□ -0.41
CLIP1-201ENST00000302528 CT47B1P0C2W7 299 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-201ENST00000302528 NUCB2P80303 420 aa12.49□□□□□ -0.41
CLIP1-201ENST00000302528 NUP155O75694 1391 aa12.49□□□□□ -0.41
CLIP1-201ENST00000302528 CCDC27Q2M243 656 aa12.49□□□□□ -0.41
CLIP1-201ENST00000302528 COG3Q96JB2 828 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms