RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 BCL11BQ9C0K0 894 aaPredicted RBP18.34■□□□□ 0.53
CDT1-201ENST00000301019 RALBP1Q15311 655 aa18.34■□□□□ 0.53
CDT1-201ENST00000301019 SPINK5Q9NQ38 1064 aaPredicted RBP18.34■□□□□ 0.53
CDT1-201ENST00000301019 GPATCH8Q9UKJ3 1502 aaKnown RBP18.33■□□□□ 0.53
CDT1-201ENST00000301019 RIPK4P57078 832 aa18.33■□□□□ 0.52
CDT1-201ENST00000301019 KDM6BO15054 1643 aa18.33■□□□□ 0.52
CDT1-201ENST00000301019 CFDP1Q9UEE9 299 aaPredicted RBP18.32■□□□□ 0.52
CDT1-201ENST00000301019 ABCC10Q5T3U5 1492 aa18.32■□□□□ 0.52
CDT1-201ENST00000301019 TSC1Q92574 1164 aa18.32■□□□□ 0.52
CDT1-201ENST00000301019 ZCCHC11Q5TAX3 1644 aaKnown RBP18.32■□□□□ 0.52
CDT1-201ENST00000301019 BRD4O60885 1362 aaPredicted RBP18.32■□□□□ 0.52
CDT1-201ENST00000301019 IGSF3O75054 1194 aa18.32■□□□□ 0.52
CDT1-201ENST00000301019 MSNP26038 577 aaKnown RBP18.31■□□□□ 0.52
CDT1-201ENST00000301019 TNNQ9UQP3 1299 aa18.31■□□□□ 0.52
CDT1-201ENST00000301019 WDR43Q15061 677 aaKnown RBP eCLIP18.3■□□□□ 0.52
CDT1-201ENST00000301019 BBXQ8WY36 941 aaPredicted RBP18.3■□□□□ 0.52
CDT1-201ENST00000301019 FAM177BA6PVY3 158 aa18.3■□□□□ 0.52
CDT1-201ENST00000301019 PKD2Q13563 968 aa18.3■□□□□ 0.52
CDT1-201ENST00000301019 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.3■□□□□ 0.52
CDT1-201ENST00000301019 TPM2P07951 284 aa18.29■□□□□ 0.52
CDT1-201ENST00000301019 CALD1Q05682 793 aaKnown RBP18.29■□□□□ 0.52
CDT1-201ENST00000301019 DUSP27Q5VZP5 1158 aa18.29■□□□□ 0.52
CDT1-201ENST00000301019 TPRNQ4KMQ1 711 aa18.28■□□□□ 0.52
CDT1-201ENST00000301019 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
CDT1-201ENST00000301019 ANKRD30BQ9BXX2 1392 aa18.27■□□□□ 0.52
CDT1-201ENST00000301019 VGLL3A8MV65 326 aa18.27■□□□□ 0.52
CDT1-201ENST00000301019 PANK3Q9H999 370 aa18.27■□□□□ 0.52
CDT1-201ENST00000301019 UQCRHLA0A096LP55 91 aa18.27■□□□□ 0.51
CDT1-201ENST00000301019 UQCRHP07919 91 aa18.27■□□□□ 0.51
CDT1-201ENST00000301019 GOLGA2Q08379 1002 aa18.26■□□□□ 0.51
CDT1-201ENST00000301019 CHMP4BQ9H444 224 aaKnown RBP18.26■□□□□ 0.51
CDT1-201ENST00000301019 PLEKHH1Q9ULM0 1364 aa18.25■□□□□ 0.51
CDT1-201ENST00000301019 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
CDT1-201ENST00000301019 CAMSAP2Q08AD1 1489 aa18.24■□□□□ 0.51
CDT1-201ENST00000301019 APAF1O14727 1248 aa18.24■□□□□ 0.51
CDT1-201ENST00000301019 CHMP5Q9NZZ3 219 aa18.24■□□□□ 0.51
CDT1-201ENST00000301019 CDC42BPAQ5VT25 1732 aa18.24■□□□□ 0.51
CDT1-201ENST00000301019 BCORL1Q5H9F3 1711 aa18.23■□□□□ 0.51
CDT1-201ENST00000301019 PLCD3Q8N3E9 789 aa18.23■□□□□ 0.51
CDT1-201ENST00000301019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.23■□□□□ 0.512e-6■■□□□ 14.3
CDT1-201ENST00000301019 NASPP49321 788 aaPredicted RBP18.23■□□□□ 0.51
CDT1-201ENST00000301019 ANP32BQ92688 251 aaKnown RBP18.22■□□□□ 0.51
CDT1-201ENST00000301019 CBX1P83916 185 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 NBPF1Q3BBV0 1214 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 TBC1D32Q96NH3 1257 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 TTC37Q6PGP7 1564 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 NPM1P06748 294 aaKnown RBP eCLIP18.21■□□□□ 0.51
CDT1-201ENST00000301019 DAPK1P53355 1430 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 PDZRN3Q9UPQ7 1066 aa18.21■□□□□ 0.51
CDT1-201ENST00000301019 RRP7AQ9Y3A4 280 aaKnown RBP18.21■□□□□ 0.51
CDT1-201ENST00000301019 ABCC5O15440 1437 aa18.2■□□□□ 0.5
CDT1-201ENST00000301019 TNPO1Q92973 898 aaKnown RBP18.2■□□□□ 0.5
CDT1-201ENST00000301019 C22orf23Q9BZE7 217 aa18.2■□□□□ 0.5
CDT1-201ENST00000301019 WDR7Q9Y4E6 1490 aa18.19■□□□□ 0.5
CDT1-201ENST00000301019 HSCBQ8IWL3 235 aa18.19■□□□□ 0.5
CDT1-201ENST00000301019 DNMT1P26358 1616 aaKnown RBP18.18■□□□□ 0.5
CDT1-201ENST00000301019 HSP90AB1P08238 724 aaKnown RBP18.18■□□□□ 0.5
CDT1-201ENST00000301019 RPRD2Q5VT52 1461 aaKnown RBP18.18■□□□□ 0.5
CDT1-201ENST00000301019 DNTTIP2Q5QJE6 756 aaKnown RBP18.17■□□□□ 0.5
CDT1-201ENST00000301019 CYB5RLQ6IPT4 315 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 ASXL2Q76L83 1435 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 ZBTB22O15209 634 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 PCDHB15Q9Y5E8 787 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 TEX14Q8IWB6 1497 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 ZSCAN30Q86W11 494 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 PREX2Q70Z35 1606 aa18.17■□□□□ 0.5
CDT1-201ENST00000301019 FOXD4L5Q5VV16 416 aaPredicted RBP18.15■□□□□ 0.5
CDT1-201ENST00000301019 FOXD4L4Q8WXT5 416 aaPredicted RBP18.15■□□□□ 0.5
CDT1-201ENST00000301019 RIMBP3CA6NJZ7 1639 aa18.15■□□□□ 0.5
CDT1-201ENST00000301019 RIMBP3BA6NNM3 1639 aa18.15■□□□□ 0.5
CDT1-201ENST00000301019 RIMBP3Q9UFD9 1639 aa18.15■□□□□ 0.5
CDT1-201ENST00000301019 CDC42BPBQ9Y5S2 1711 aa18.15■□□□□ 0.5
CDT1-201ENST00000301019 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
CDT1-201ENST00000301019 CHAMP1Q96JM3 812 aa18.15■□□□□ 0.5
CDT1-201ENST00000301019 DDX49Q9Y6V7 483 aaKnown RBP18.15■□□□□ 0.5
CDT1-201ENST00000301019 ARHGAP5Q13017 1502 aa18.14■□□□□ 0.49
CDT1-201ENST00000301019 OFD1O75665 1012 aa18.13■□□□□ 0.49
CDT1-201ENST00000301019 RNF214Q8ND24 703 aa18.13■□□□□ 0.49
CDT1-201ENST00000301019 ROCK2O75116 1388 aaKnown RBP18.13■□□□□ 0.49
CDT1-201ENST00000301019 SPDYE4A6NLX3 237 aa18.13■□□□□ 0.49
CDT1-201ENST00000301019 DDX11L8A8MPP1 907 aa18.13■□□□□ 0.49
CDT1-201ENST00000301019 PLCH2O75038 1416 aa18.13■□□□□ 0.49
CDT1-201ENST00000301019 HNRNPMP52272 730 aaKnown RBP eCLIP18.12■□□□□ 0.49
CDT1-201ENST00000301019 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.12■□□□□ 0.49
CDT1-201ENST00000301019 ROCK1Q13464 1354 aa18.12■□□□□ 0.49
CDT1-201ENST00000301019 RLBP1P12271 317 aa18.11■□□□□ 0.49
CDT1-201ENST00000301019 RBM42Q9BTD8 480 aaKnown RBP18.11■□□□□ 0.49
CDT1-201ENST00000301019 SAMD9LQ8IVG5 1584 aa18.11■□□□□ 0.49
CDT1-201ENST00000301019 MYO5CQ9NQX4 1742 aa18.11■□□□□ 0.49
CDT1-201ENST00000301019 CAVIN1Q6NZI2 390 aaKnown RBP18.11■□□□□ 0.49
CDT1-201ENST00000301019 PER1O15534 1290 aaPredicted RBP18.11■□□□□ 0.49
CDT1-201ENST00000301019 MAPK8IP3Q9UPT6 1336 aa18.1■□□□□ 0.49
CDT1-201ENST00000301019 SSFA2P28290 1259 aa18.1■□□□□ 0.49
CDT1-201ENST00000301019 SLFN5Q08AF3 891 aa18.1■□□□□ 0.49
CDT1-201ENST00000301019 MBD5Q9P267 1494 aa18.09■□□□□ 0.49
CDT1-201ENST00000301019 EFCAB2Q5VUJ9 269 aa18.08■□□□□ 0.49
CDT1-201ENST00000301019 TSPY4P0CV99 314 aa18.07■□□□□ 0.48
CDT1-201ENST00000301019 TSPY10P0CW01 314 aa18.07■□□□□ 0.48
CDT1-201ENST00000301019 GTF2E1P29083 439 aaPredicted RBP18.07■□□□□ 0.48
CDT1-201ENST00000301019 FOXD4L6Q3SYB3 417 aaPredicted RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms