RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 NUCB2P80303 420 aa18.07■□□□□ 0.48
SCN3B-201ENST00000299333 CGNL1Q0VF96 1302 aa18.07■□□□□ 0.48
SCN3B-201ENST00000299333 CHMP4CQ96CF2 233 aa18.07■□□□□ 0.48
SCN3B-201ENST00000299333 ANO2Q9NQ90 1003 aa18.06■□□□□ 0.48
SCN3B-201ENST00000299333 NEFHP12036 1026 aa18.06■□□□□ 0.48
SCN3B-201ENST00000299333 KANK4Q5T7N3 995 aaPredicted RBP18.05■□□□□ 0.48
SCN3B-201ENST00000299333 CSB-PGBD3P0DP91 1061 aa18.05■□□□□ 0.48
SCN3B-201ENST00000299333 L3MBTL2Q969R5 705 aa18.05■□□□□ 0.48
SCN3B-201ENST00000299333 KIF15Q9NS87 1388 aa18.05■□□□□ 0.48
SCN3B-201ENST00000299333 NAP1L1P55209 391 aaKnown RBP18.05■□□□□ 0.48
SCN3B-201ENST00000299333 LMOD3Q0VAK6 560 aa18.05■□□□□ 0.48
SCN3B-201ENST00000299333 CECR2Q9BXF3 1484 aa18.04■□□□□ 0.48
SCN3B-201ENST00000299333 ZKSCAN1P17029 563 aaPredicted RBP18.03■□□□□ 0.48
SCN3B-201ENST00000299333 E9PSI1 815 aa18.03■□□□□ 0.48
SCN3B-201ENST00000299333 TRAK2O60296 914 aa18.03■□□□□ 0.48
SCN3B-201ENST00000299333 TRIM29Q14134 588 aa18.03■□□□□ 0.48
SCN3B-201ENST00000299333 C22orf23Q9BZE7 217 aa18.02■□□□□ 0.48
SCN3B-201ENST00000299333 SMC3Q9UQE7 1217 aa18.02■□□□□ 0.48
SCN3B-201ENST00000299333 CUX2O14529 1486 aa18.02■□□□□ 0.47
SCN3B-201ENST00000299333 SYNE3Q6ZMZ3 975 aa18.02■□□□□ 0.47
SCN3B-201ENST00000299333 FRAT2O75474 233 aaPredicted RBP18.01■□□□□ 0.47
SCN3B-201ENST00000299333 HDGFP51858 240 aaKnown RBP18.01■□□□□ 0.47
SCN3B-201ENST00000299333 ZNF526Q8TF50 670 aaPredicted RBP18.01■□□□□ 0.47
SCN3B-201ENST00000299333 HOOK1Q9UJC3 728 aaKnown RBP18.01■□□□□ 0.47
SCN3B-201ENST00000299333 DCTN1Q14203 1278 aa18.01■□□□□ 0.47
SCN3B-201ENST00000299333 LEKR1Q6ZMV7 388 aa18.01■□□□□ 0.47
SCN3B-201ENST00000299333 SKIDA1Q1XH10 827 aa18.01■□□□□ 0.47
SCN3B-201ENST00000299333 UBE2Q2Q8WVN8 375 aa18.01■□□□□ 0.47
SCN3B-201ENST00000299333 FOSBP53539 338 aa18.01■□□□□ 0.47
SCN3B-201ENST00000299333 TSPYL1Q9H0U9 437 aa18■□□□□ 0.47
SCN3B-201ENST00000299333 CPLX2Q6PUV4 134 aaKnown RBP18■□□□□ 0.47
SCN3B-201ENST00000299333 PDILTQ8N807 584 aa18■□□□□ 0.47
SCN3B-201ENST00000299333 EIF3AQ14152 1382 aaKnown RBP18■□□□□ 0.47
SCN3B-201ENST00000299333 RUFY2Q8WXA3 655 aa18■□□□□ 0.47
SCN3B-201ENST00000299333 PRKRIP1Q9H875 184 aaPredicted RBP18■□□□□ 0.47
SCN3B-201ENST00000299333 CAVIN1Q6NZI2 390 aaKnown RBP17.99■□□□□ 0.47
SCN3B-201ENST00000299333 CCDC73Q6ZRK6 1079 aa17.99■□□□□ 0.47
SCN3B-201ENST00000299333 CPLX1O14810 134 aa17.99■□□□□ 0.47
SCN3B-201ENST00000299333 ERCC4Q92889 916 aaPredicted RBP17.99■□□□□ 0.47
SCN3B-201ENST00000299333 CCDC47Q96A33 483 aaKnown RBP17.99■□□□□ 0.47
SCN3B-201ENST00000299333 MLECQ14165 292 aa17.98■□□□□ 0.47
SCN3B-201ENST00000299333 TTLL5Q6EMB2 1281 aa17.98■□□□□ 0.47
SCN3B-201ENST00000299333 CAGE1Q8TC20 777 aa17.98■□□□□ 0.47
SCN3B-201ENST00000299333 TERF2IPQ9NYB0 399 aa17.97■□□□□ 0.47
SCN3B-201ENST00000299333 HMGN5P82970 282 aaKnown RBP17.97■□□□□ 0.47
SCN3B-201ENST00000299333 NUP155O75694 1391 aa17.97■□□□□ 0.47
SCN3B-201ENST00000299333 DDX19BQ9UMR2 479 aa17.97■□□□□ 0.47
SCN3B-201ENST00000299333 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
SCN3B-201ENST00000299333 TRIM5Q9C035 493 aa17.96■□□□□ 0.47
SCN3B-201ENST00000299333 CCDC173Q0VFZ6 552 aa17.96■□□□□ 0.47
SCN3B-201ENST00000299333 RRP9O43818 475 aaKnown RBP17.96■□□□□ 0.47
SCN3B-201ENST00000299333 GGT6Q6P531 493 aa17.96■□□□□ 0.47
SCN3B-201ENST00000299333 PANK3Q9H999 370 aa17.96■□□□□ 0.47
SCN3B-201ENST00000299333 DEF6Q9H4E7 631 aa17.95■□□□□ 0.46
SCN3B-201ENST00000299333 RBM25P49756 843 aaKnown RBP17.95■□□□□ 0.46
SCN3B-201ENST00000299333 AXDND1Q5T1B0 1012 aaPredicted RBP17.95■□□□□ 0.46
SCN3B-201ENST00000299333 INTS3Q68E01 1043 aaKnown RBP17.95■□□□□ 0.46
SCN3B-201ENST00000299333 DYDC1Q8WWB3 177 aa17.95■□□□□ 0.46
SCN3B-201ENST00000299333 TMX4Q9H1E5 349 aaPredicted RBP17.95■□□□□ 0.46
SCN3B-201ENST00000299333 EIF4G1Q04637 1599 aaKnown RBP17.95■□□□□ 0.46
SCN3B-201ENST00000299333 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
SCN3B-201ENST00000299333 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.94■□□□□ 0.46
SCN3B-201ENST00000299333 NAT10Q9H0A0 1025 aaKnown RBP17.94■□□□□ 0.46
SCN3B-201ENST00000299333 TAF3Q5VWG9 929 aa17.93■□□□□ 0.46
SCN3B-201ENST00000299333 TSPY26PQ9H489 355 aa17.93■□□□□ 0.46
SCN3B-201ENST00000299333 DZIP1LQ8IYY4 767 aaKnown RBP17.93■□□□□ 0.46
SCN3B-201ENST00000299333 APAF1O14727 1248 aa17.92■□□□□ 0.46
SCN3B-201ENST00000299333 LTV1Q96GA3 475 aaPredicted RBP17.92■□□□□ 0.46
SCN3B-201ENST00000299333 LNPKQ9C0E8 428 aa17.92■□□□□ 0.46
SCN3B-201ENST00000299333 UQCRHLA0A096LP55 91 aa17.92■□□□□ 0.46
SCN3B-201ENST00000299333 UQCRHP07919 91 aa17.92■□□□□ 0.46
SCN3B-201ENST00000299333 G3V3G9 751 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 DCAF8Q5TAQ9 597 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 RNF20Q5VTR2 975 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 FMN1Q68DA7 1419 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 SPC24Q8NBT2 197 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 OLFM4Q6UX06 510 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 MROH2BQ7Z745 1585 aa17.91■□□□□ 0.46
SCN3B-201ENST00000299333 ST20-MTHFSA0A0A6YYL1 179 aa17.9■□□□□ 0.46
SCN3B-201ENST00000299333 PRPF40AO75400 957 aaKnown RBP17.9■□□□□ 0.46
SCN3B-201ENST00000299333 IFIT2P09913 472 aaKnown RBP17.9■□□□□ 0.46
SCN3B-201ENST00000299333 AMPHP49418 695 aa17.9■□□□□ 0.46
SCN3B-201ENST00000299333 DHX37Q8IY37 1157 aaKnown RBP17.9■□□□□ 0.46
SCN3B-201ENST00000299333 SMC2O95347 1197 aa17.9■□□□□ 0.46
SCN3B-201ENST00000299333 SDF4Q9BRK5 362 aa17.89■□□□□ 0.46
SCN3B-201ENST00000299333 CCDC27Q2M243 656 aa17.89■□□□□ 0.45
SCN3B-201ENST00000299333 CT47A1Q5JQC4 288 aaPredicted RBP17.89■□□□□ 0.45
SCN3B-201ENST00000299333 MPNDQ8N594 471 aa17.89■□□□□ 0.45
SCN3B-201ENST00000299333 CT47B1P0C2W7 299 aaPredicted RBP17.88■□□□□ 0.45
SCN3B-201ENST00000299333 NFXL1Q6ZNB6 911 aa17.88■□□□□ 0.45
SCN3B-201ENST00000299333 GPATCH11Q8N954 259 aa17.88■□□□□ 0.45
SCN3B-201ENST00000299333 BBXQ8WY36 941 aaPredicted RBP17.88■□□□□ 0.45
SCN3B-201ENST00000299333 ZMYND15Q9H091 742 aa17.88■□□□□ 0.45
SCN3B-201ENST00000299333 ERICH4A6NGS2 130 aa17.87■□□□□ 0.45
SCN3B-201ENST00000299333 LETM1O95202 739 aaPredicted RBP17.87■□□□□ 0.45
SCN3B-201ENST00000299333 RAD21O60216 631 aa17.87■□□□□ 0.45
SCN3B-201ENST00000299333 MBD3O95983 291 aa17.86■□□□□ 0.45
SCN3B-201ENST00000299333 HSP90AB2PQ58FF8 381 aa17.86■□□□□ 0.45
SCN3B-201ENST00000299333 KIAA0754O94854 1291 aa17.86■□□□□ 0.45
SCN3B-201ENST00000299333 LRRFIP1Q32MZ4 808 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms