RNA–Protein interactions for RNA: ENST00000242776.8

DDX39A-201, Transcript of DExD-box helicase 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX39A, Length 1,471 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-201ENST00000242776 FGD6Q6ZV73 1430 aa21.55■■□□□ 1.04
DDX39A-201ENST00000242776 NWD1Q149M9 1564 aa21.55■■□□□ 1.04
DDX39A-201ENST00000242776 SLAIN2Q9P270 581 aa21.53■■□□□ 1.04
DDX39A-201ENST00000242776 NOS1P29475 1434 aa21.53■■□□□ 1.04
DDX39A-201ENST00000242776 NKTRP30414 1462 aaKnown RBP21.53■■□□□ 1.04
DDX39A-201ENST00000242776 PPP1R15AO75807 674 aaPredicted RBP21.52■■□□□ 1.04
DDX39A-201ENST00000242776 GCC2Q8IWJ2 1684 aa21.52■■□□□ 1.04
DDX39A-201ENST00000242776 CHD2O14647 1828 aaKnown RBP21.51■■□□□ 1.03
DDX39A-201ENST00000242776 CHGAP10645 457 aaKnown RBP21.5■■□□□ 1.03
DDX39A-201ENST00000242776 NUTM2DQ5VT03 806 aaPredicted RBP21.5■■□□□ 1.03
DDX39A-201ENST00000242776 C14orf37Q86TY3 774 aa21.5■■□□□ 1.03
DDX39A-201ENST00000242776 JCADQ9P266 1359 aa21.48■■□□□ 1.03
DDX39A-201ENST00000242776 FAM50AQ14320 339 aaKnown RBP21.48■■□□□ 1.03
DDX39A-201ENST00000242776 SLC52A1Q9NWF4 448 aa21.48■■□□□ 1.03
DDX39A-201ENST00000242776 RIMS2Q9UQ26 1411 aa21.47■■□□□ 1.03
DDX39A-201ENST00000242776 MEX3CQ5U5Q3 659 aaKnown RBP21.46■■□□□ 1.03
DDX39A-201ENST00000242776 COL16A1Q07092 1604 aaPredicted RBP21.45■■□□□ 1.02
DDX39A-201ENST00000242776 ZFYVE9O95405 1425 aa21.45■■□□□ 1.02
DDX39A-201ENST00000242776 PLEKHG1Q9ULL1 1385 aa21.44■■□□□ 1.02
DDX39A-201ENST00000242776 TRIM52Q96A61 297 aa21.44■■□□□ 1.02
DDX39A-201ENST00000242776 TMEM131LA2VDJ0 1609 aa21.43■■□□□ 1.02
DDX39A-201ENST00000242776 LRP6O75581 1613 aa21.43■■□□□ 1.02
DDX39A-201ENST00000242776 ANKRD50Q9ULJ7 1429 aa21.41■■□□□ 1.02
DDX39A-201ENST00000242776 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.4■■□□□ 1.02
DDX39A-201ENST00000242776 ADGRL2O95490 1459 aa21.4■■□□□ 1.02
DDX39A-201ENST00000242776 HDGFP51858 240 aaKnown RBP21.39■■□□□ 1.02
DDX39A-201ENST00000242776 RPRD2Q5VT52 1461 aaKnown RBP21.38■■□□□ 1.01
DDX39A-201ENST00000242776 NUTM2BA6NNL0 878 aaPredicted RBP21.38■■□□□ 1.01
DDX39A-201ENST00000242776 NUTM2EB1AL46 878 aaPredicted RBP21.38■■□□□ 1.01
DDX39A-201ENST00000242776 NUTM2AQ8IVF1 878 aaPredicted RBP21.38■■□□□ 1.01
DDX39A-201ENST00000242776 ATF3P18847 181 aa21.37■■□□□ 1.01
DDX39A-201ENST00000242776 TBX22Q9Y458 520 aa21.37■■□□□ 1.01
DDX39A-201ENST00000242776 E9PCH4 1651 aa21.35■■□□□ 1.01
DDX39A-201ENST00000242776 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.34■■□□□ 1.01
DDX39A-201ENST00000242776 ADAMTS13Q76LX8 1427 aa21.34■■□□□ 1.01
DDX39A-201ENST00000242776 SPATA31A6Q5VVP1 1343 aa21.34■■□□□ 1.01
DDX39A-201ENST00000242776 SHPRHQ149N8 1683 aa21.33■■□□□ 1.01
DDX39A-201ENST00000242776 ZNF772Q68DY9 489 aaPredicted RBP21.32■■□□□ 1
DDX39A-201ENST00000242776 CADPS2Q86UW7 1296 aa21.32■■□□□ 1
DDX39A-201ENST00000242776 UPF1Q92900 1129 aaKnown RBP eCLIP21.32■■□□□ 1
DDX39A-201ENST00000242776 AHDC1Q5TGY3 1603 aaPredicted RBP21.32■■□□□ 1
DDX39A-201ENST00000242776 C19orf44Q9H6X5 657 aa21.32■■□□□ 1
DDX39A-201ENST00000242776 UNC13BO14795 1591 aa21.31■■□□□ 1
DDX39A-201ENST00000242776 AMOTL2Q9Y2J4 779 aa21.3■■□□□ 1
DDX39A-201ENST00000242776 NCOA3Q9Y6Q9 1424 aa21.29■■□□□ 1
DDX39A-201ENST00000242776 DIP2AQ14689 1571 aa21.29■■□□□ 1
DDX39A-201ENST00000242776 PTPRUQ92729 1446 aa21.28■■□□□ 1
DDX39A-201ENST00000242776 BRINP3Q76B58 766 aa21.28■■□□□ 1
DDX39A-201ENST00000242776 TRPM2O94759 1503 aa21.28■■□□□ 1
DDX39A-201ENST00000242776 RXRBP28702 533 aa21.27■■□□□ 1
DDX39A-201ENST00000242776 ITGAEP38570 1179 aa21.25■□□□□ 0.99
DDX39A-201ENST00000242776 AFF2P51816 1311 aa21.24■□□□□ 0.99
DDX39A-201ENST00000242776 IQGAP3Q86VI3 1631 aa21.24■□□□□ 0.99
DDX39A-201ENST00000242776 PIK3R4Q99570 1358 aa21.23■□□□□ 0.99
DDX39A-201ENST00000242776 DDX17Q92841 729 aaKnown RBP21.23■□□□□ 0.99
DDX39A-201ENST00000242776 ASXL1Q8IXJ9 1541 aa21.22■□□□□ 0.99
DDX39A-201ENST00000242776 NUP155O75694 1391 aa21.21■□□□□ 0.99
DDX39A-201ENST00000242776 ZNF326Q5BKZ1 582 aaKnown RBP21.2■□□□□ 0.98
DDX39A-201ENST00000242776 C8orf37Q96NL8 207 aa21.2■□□□□ 0.98
DDX39A-201ENST00000242776 NRXN3Q9Y4C0 1643 aa21.19■□□□□ 0.98
DDX39A-201ENST00000242776 XRN1Q8IZH2 1706 aaKnown RBP21.18■□□□□ 0.98
DDX39A-201ENST00000242776 NHSL1Q5SYE7 1610 aa21.17■□□□□ 0.98
DDX39A-201ENST00000242776 MST1RQ04912 1400 aa21.17■□□□□ 0.98
DDX39A-201ENST00000242776 SPHKAPQ2M3C7 1700 aa21.15■□□□□ 0.98
DDX39A-201ENST00000242776 METP08581 1390 aa21.14■□□□□ 0.98
DDX39A-201ENST00000242776 DCCP43146 1447 aa21.14■□□□□ 0.97
DDX39A-201ENST00000242776 SETD5Q9C0A6 1442 aa21.14■□□□□ 0.97
DDX39A-201ENST00000242776 ADAMTS2O95450 1211 aa21.13■□□□□ 0.97
DDX39A-201ENST00000242776 LRRC59Q96AG4 307 aaKnown RBP21.13■□□□□ 0.97
DDX39A-201ENST00000242776 QTRT2Q9H974 415 aaKnown RBP21.13■□□□□ 0.97
DDX39A-201ENST00000242776 NALCNQ8IZF0 1738 aa21.13■□□□□ 0.97
DDX39A-201ENST00000242776 PPARGC1BQ86YN6 1023 aaKnown RBP21.13■□□□□ 0.97
DDX39A-201ENST00000242776 RGS12O14924 1447 aa21.12■□□□□ 0.97
DDX39A-201ENST00000242776 ROCK1Q13464 1354 aa21.12■□□□□ 0.97
DDX39A-201ENST00000242776 SETBP1Q9Y6X0 1596 aa21.12■□□□□ 0.97
DDX39A-201ENST00000242776 CDK12Q9NYV4 1490 aaPredicted RBP21.12■□□□□ 0.97
DDX39A-201ENST00000242776 PNPLA6Q8IY17 1366 aa21.1■□□□□ 0.97
DDX39A-201ENST00000242776 NGLY1Q96IV0 654 aa21.08■□□□□ 0.97
DDX39A-201ENST00000242776 ADGRL3Q9HAR2 1447 aa21.08■□□□□ 0.96
DDX39A-201ENST00000242776 RBM6P78332 1123 aaKnown RBP21.07■□□□□ 0.96
DDX39A-201ENST00000242776 CLTCL1P53675 1640 aa21.06■□□□□ 0.96
DDX39A-201ENST00000242776 NEXMIFQ5QGS0 1516 aa21.04■□□□□ 0.96
DDX39A-201ENST00000242776 KIF1BO60333 1816 aa21.03■□□□□ 0.96
DDX39A-201ENST00000242776 ORAI2Q96SN7 254 aa21.03■□□□□ 0.96
DDX39A-201ENST00000242776 C1orf167Q5SNV9 1468 aa21.02■□□□□ 0.96
DDX39A-201ENST00000242776 USP21Q9UK80 565 aa21■□□□□ 0.95
DDX39A-201ENST00000242776 ROBO2Q9HCK4 1378 aa20.97■□□□□ 0.95
DDX39A-201ENST00000242776 ATAD2Q6PL18 1390 aa20.95■□□□□ 0.94
DDX39A-201ENST00000242776 TRPC5Q9UL62 973 aaPredicted RBP20.94■□□□□ 0.94
DDX39A-201ENST00000242776 SOS2Q07890 1332 aaPredicted RBP20.93■□□□□ 0.94
DDX39A-201ENST00000242776 XPCQ01831 940 aaPredicted RBP20.93■□□□□ 0.94
DDX39A-201ENST00000242776 LAMC1P11047 1609 aa20.92■□□□□ 0.94
DDX39A-201ENST00000242776 SRCAPQ6ZRS2 3230 aa20.91■□□□□ 0.94
DDX39A-201ENST00000242776 PTCH1Q13635 1447 aa20.91■□□□□ 0.94
DDX39A-201ENST00000242776 ESCO1Q5FWF5 840 aa20.9■□□□□ 0.94
DDX39A-201ENST00000242776 NUTM2FA1L443 756 aa20.89■□□□□ 0.94
DDX39A-201ENST00000242776 VGFO15240 615 aaPredicted RBP20.89■□□□□ 0.94
DDX39A-201ENST00000242776 COL22A1Q8NFW1 1626 aaPredicted RBP20.88■□□□□ 0.93
DDX39A-201ENST00000242776 ATRNO75882 1429 aa20.87■□□□□ 0.93
DDX39A-201ENST00000242776 FNBP4Q8N3X1 1017 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms