RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GIT1Q9Y2X7 761 aa32.87■■■□□ 2.85
CTCF-203ENST00000566078 R3HCC1Q9Y3T6 440 aaKnown RBP32.87■■■□□ 2.85
CTCF-203ENST00000566078 FOXN3O00409 490 aaPredicted RBP32.86■■■□□ 2.85
CTCF-203ENST00000566078 SERPING1P05155 500 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 FERP16591 822 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 RTN4RL1Q86UN2 441 aaPredicted RBP32.86■■■□□ 2.85
CTCF-203ENST00000566078 ECHDC2Q86YB7 292 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 FMNL3Q8IVF7 1028 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 SEPT8Q92599 483 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 RPS6KC1Q96S38 1066 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 ARID3AQ99856 593 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 NHEJ1Q9H9Q4 299 aaPredicted RBP32.86■■■□□ 2.85
CTCF-203ENST00000566078 AGAP1Q9UPQ3 857 aa32.86■■■□□ 2.85
CTCF-203ENST00000566078 ESPNB1AK53 854 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 PTGESO14684 152 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 XPOTO43592 962 aaKnown RBP32.85■■■□□ 2.85
CTCF-203ENST00000566078 KCNJ6P48051 423 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 KLHL30Q0D2K2 578 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 CUL2Q13617 745 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 IRF2BP2Q7Z5L9 587 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 DBF4BQ8NFT6 615 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 SHC3Q92529 594 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 TAF4BQ92750 862 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 GAD1Q99259 594 aa32.85■■■□□ 2.85
CTCF-203ENST00000566078 PARNO95453 639 aaKnown RBP32.84■■■□□ 2.85
CTCF-203ENST00000566078 TBXAS1P24557 533 aaPredicted RBP32.84■■■□□ 2.85
CTCF-203ENST00000566078 RBP5P82980 135 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 TOGARAM2Q6ZUX3 1019 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 C17orf53Q8N3J3 647 aaPredicted RBP32.84■■■□□ 2.85
CTCF-203ENST00000566078 NIF3L1Q9GZT8 377 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 TSPYL2Q9H2G4 693 aaPredicted RBP32.84■■■□□ 2.85
CTCF-203ENST00000566078 RSAD1Q9HA92 442 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 C9IYK1 514 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 EVI5O60447 810 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 ATICP31939 592 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 USP8P40818 1118 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 SLC24A5Q71RS6 500 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 APBB2Q92870 758 aa32.84■■■□□ 2.85
CTCF-203ENST00000566078 ARL5CA6NH57 179 aa32.83■■■□□ 2.85
CTCF-203ENST00000566078 EIF4A3P38919 411 aaKnown RBP32.83■■■□□ 2.85
CTCF-203ENST00000566078 ZNF598Q86UK7 904 aaKnown RBP32.83■■■□□ 2.85
CTCF-203ENST00000566078 PPP1R10Q96QC0 940 aaKnown RBP32.83■■■□□ 2.85
CTCF-203ENST00000566078 CXCL10P02778 98 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 EN2P19622 333 aaPredicted RBP32.82■■■□□ 2.84
CTCF-203ENST00000566078 PRKCIP41743 596 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 ZNF667Q5HYK9 610 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 HPDLQ96IR7 371 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 CCDC42Q96M95 316 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 DESI2Q9BSY9 194 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 DEF6Q9H4E7 631 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 HAUS4Q9H6D7 363 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 UBN1Q9NPG3 1134 aa32.82■■■□□ 2.84
CTCF-203ENST00000566078 CYLC1P35663 651 aaPredicted RBP32.81■■■□□ 2.84
CTCF-203ENST00000566078 MAPK8IP2Q13387 824 aaPredicted RBP32.81■■■□□ 2.84
CTCF-203ENST00000566078 SCARA5Q6ZMJ2 495 aa32.81■■■□□ 2.84
CTCF-203ENST00000566078 FAM71AQ8IYT1 594 aa32.81■■■□□ 2.84
CTCF-203ENST00000566078 CCDC170Q8IYT3 715 aa32.81■■■□□ 2.84
CTCF-203ENST00000566078 GSTCDQ8NEC7 633 aa32.81■■■□□ 2.84
CTCF-203ENST00000566078 BZW2Q9Y6E2 419 aaKnown RBP32.81■■■□□ 2.84
CTCF-203ENST00000566078 LTBP2Q14767 1821 aa32.81■■■□□ 2.84
CTCF-203ENST00000566078 SSU72P8A0A1W2PR75 194 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 CCDC172P0C7W6 258 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 CYP3A5P20815 502 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 SCNN1GP51170 649 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 SOX4Q06945 474 aaPredicted RBP32.8■■■□□ 2.84
CTCF-203ENST00000566078 TCTN1Q2MV58 587 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 VRTNQ9H8Y1 702 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 GOLGA2P5Q9HBQ8 144 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 PRDM5Q9NQX1 630 aaPredicted RBP32.8■■■□□ 2.84
CTCF-203ENST00000566078 NXF1Q9UBU9 619 aaKnown RBP32.8■■■□□ 2.84
CTCF-203ENST00000566078 POLIQ9UNA4 740 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 TTC3P53804 2025 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 PPEF2O14830 753 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 NDUFA10O95299 355 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 KRT5P13647 590 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 ASPAP45381 313 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 WDR72Q3MJ13 1102 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 C9orf57Q5W0N0 161 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 DEFB128Q7Z7B8 93 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 JAKMIP2Q96AA8 810 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 MIOSQ9NXC5 875 aa32.8■■■□□ 2.84
CTCF-203ENST00000566078 EPN1Q9Y6I3 576 aaPredicted RBP32.8■■■□□ 2.84
CTCF-203ENST00000566078 STAU1O95793 577 aaKnown RBP32.79■■■□□ 2.84
CTCF-203ENST00000566078 EOMESO95936 686 aa32.79■■■□□ 2.84
CTCF-203ENST00000566078 AFF1P51825 1210 aaKnown RBP32.79■■■□□ 2.84
CTCF-203ENST00000566078 FAM189BP81408 668 aa32.79■■■□□ 2.84
CTCF-203ENST00000566078 MYO1EQ12965 1108 aa32.79■■■□□ 2.84
CTCF-203ENST00000566078 SLC38A7Q9NVC3 462 aa32.79■■■□□ 2.84
CTCF-203ENST00000566078 THP07101 528 aa32.78■■■□□ 2.84
CTCF-203ENST00000566078 KIF11P52732 1056 aa32.78■■■□□ 2.84
CTCF-203ENST00000566078 PTK2Q05397 1052 aa32.78■■■□□ 2.84
CTCF-203ENST00000566078 FAM43BQ6ZT52 329 aaPredicted RBP32.78■■■□□ 2.84
CTCF-203ENST00000566078 ACRBPQ8NEB7 543 aa32.78■■■□□ 2.84
CTCF-203ENST00000566078 SPTLC3Q9NUV7 552 aa32.78■■■□□ 2.84
CTCF-203ENST00000566078 AKR1B10O60218 316 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 ACO1P21399 889 aaKnown RBP32.77■■■□□ 2.84
CTCF-203ENST00000566078 ZNF571Q7Z3V5 609 aaPredicted RBP32.77■■■□□ 2.84
CTCF-203ENST00000566078 UBE2Q1Q7Z7E8 422 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 LRRC52Q8N7C0 313 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 INPP5FQ9Y2H2 1132 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms