RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 CCDC40Q4G0X9 1142 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 ANO6Q4KMQ2 910 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 TRAPPC11Q7Z392 1133 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 FRMD5Q7Z6J6 570 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 DEFB123Q8N688 67 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 ENOX1Q8TC92 643 aaKnown RBP23.41■■□□□ 1.34
SNX1-206ENST00000559389 HERC2P3Q9BVR0 1158 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 STK39Q9UEW8 545 aa23.41■■□□□ 1.34
SNX1-206ENST00000559389 IKBKBO14920 756 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 AARSP49588 968 aaKnown RBP eCLIP23.4■■□□□ 1.34
SNX1-206ENST00000559389 CAMK1Q14012 370 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 TPD52L1Q16890 204 aaPredicted RBP23.4■■□□□ 1.34
SNX1-206ENST00000559389 TDRD10Q5VZ19 366 aaKnown RBP23.4■■□□□ 1.34
SNX1-206ENST00000559389 LRRC52Q8N7C0 313 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 ZNF560Q96MR9 790 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 GPR62Q9BZJ7 368 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 ZBP1Q9H171 429 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 THAP9Q9H5L6 903 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 TLR9Q9NR96 1032 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 PUF60Q9UHX1 559 aaKnown RBP23.4■■□□□ 1.34
SNX1-206ENST00000559389 NUB1Q9Y5A7 615 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 CHD9Q3L8U1 2897 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 TSC2P49815 1807 aa23.4■■□□□ 1.34
SNX1-206ENST00000559389 SOD2P04179 222 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 BRCC3P46736 316 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 PPP3CAQ08209 521 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 ELAVL2Q12926 359 aaKnown RBP23.39■■□□□ 1.33
SNX1-206ENST00000559389 ZACNQ401N2 412 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 DCAF17Q5H9S7 520 aaPredicted RBP23.39■■□□□ 1.33
SNX1-206ENST00000559389 SCARA3Q6AZY7 606 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 C15orf39Q6ZRI6 1047 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 IRF2BP1Q8IU81 584 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 CNOT6LQ96LI5 555 aaKnown RBP23.39■■□□□ 1.33
SNX1-206ENST00000559389 GUCD1Q96NT3 240 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 NFE2L3Q9Y4A8 694 aa23.39■■□□□ 1.33
SNX1-206ENST00000559389 LAMA2P24043 3122 aaKnown RBP23.39■■□□□ 1.33
SNX1-206ENST00000559389 FSCN2O14926 492 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 C4BPAP04003 597 aaKnown RBP23.38■■□□□ 1.33
SNX1-206ENST00000559389 GTF2H1P32780 548 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 PNPLA4P41247 253 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 RBP5P82980 135 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 MYL5Q02045 173 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 ADGRE1Q14246 886 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 PTPROQ16827 1216 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 SV2AQ7L0J3 742 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 TRIM59Q8IWR1 403 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 VPS52Q8N1B4 723 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 SLC35C1Q96A29 364 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 MRPL38Q96DV4 380 aaKnown RBP23.38■■□□□ 1.33
SNX1-206ENST00000559389 SUSD3Q96L08 255 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 BPIFA3Q9BQP9 254 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 NAT10Q9H0A0 1025 aaKnown RBP23.38■■□□□ 1.33
SNX1-206ENST00000559389 MTMR10Q9NXD2 777 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 AGAP1Q9UPQ3 857 aa23.38■■□□□ 1.33
SNX1-206ENST00000559389 VWA8A3KMH1 1905 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 SCN1AP35498 2009 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 SPTLC1O15269 473 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TRAPPC3O43617 180 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 STX10O60499 249 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 KRT19P08727 400 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 PAX3P23760 479 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 GCLMP48507 274 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TAF6P49848 677 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 LILRA4P59901 499 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 BIRC3Q13489 604 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 SV2CQ496J9 727 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TIGD5Q53EQ6 642 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TCERG1LQ5VWI1 586 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TCF25Q9BQ70 676 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 TMEM8AQ9HCN3 771 aa23.37■■□□□ 1.33
SNX1-206ENST00000559389 I3L4J1 428 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 CSPG5O95196 566 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 CTSAP10619 480 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 POU3F3P20264 500 aaPredicted RBP23.36■■□□□ 1.33
SNX1-206ENST00000559389 IRS1P35568 1242 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 ERVFC1P60507 584 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.36■■□□□ 1.33
SNX1-206ENST00000559389 FAM114A1Q8IWE2 563 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 MYLIPQ8WY64 445 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 GAS2L1Q99501 681 aaPredicted RBP23.36■■□□□ 1.33
SNX1-206ENST00000559389 CDX2Q99626 313 aaPredicted RBP23.36■■□□□ 1.33
SNX1-206ENST00000559389 CHST7Q9NS84 486 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 LMCD1Q9NZU5 365 aa23.36■■□□□ 1.33
SNX1-206ENST00000559389 M0QZQ0 153 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 PHACTR2O75167 634 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 VNN1O95497 513 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 URODP06132 367 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 FGFR3P22607 806 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 GLUD2P49448 558 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 MXI1P50539 228 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 NCAPHQ15003 741 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 FAM171A1Q5VUB5 890 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 CDKAL1Q5VV42 579 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 PDE12Q6L8Q7 609 aaKnown RBP23.35■■□□□ 1.33
SNX1-206ENST00000559389 TAS1R1Q7RTX1 841 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 AOPEPQ8N6M6 819 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 B3GALT6Q96L58 329 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 MMRN2Q9H8L6 949 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 ENTPD7Q9NQZ7 604 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 SAMSN1Q9NSI8 373 aaKnown RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms