RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PPM1NQ8N819 430 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 SPATA18Q8TC71 538 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 RILPL2Q969X0 211 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 CEP95Q96GE4 821 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 CCDC74BQ96LY2 380 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 SENP6Q9GZR1 1112 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS29-210ENST00000552130 QRSL1Q9H0R6 528 aaKnown RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 TOMM22Q9NS69 142 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 RASAL2Q9UJF2 1139 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 RPS6KA6Q9UK32 745 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 LCHNA4D1U4 455 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 TMEM110-MUSTN1A8MSY1 372 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 H0Y626 953 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 PLOD2O00469 737 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 FYB1O15117 783 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 SLC7A4O43246 635 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 PTP4A3O75365 173 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 SLC9A1P19634 815 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 SLC16A1P53985 500 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 IFI35P80217 286 aaPredicted RBP6.96□□□□□ -1.3
VPS29-210ENST00000552130 PPARDQ03181 441 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 CYP4F3Q08477 520 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 KIAA2012Q0VF49 1180 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 PLS1Q14651 629 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 TNIP1Q15025 636 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 KRTCAP3Q53RY4 240 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 ERICH6BQ5W0A0 696 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 GPR139Q6DWJ6 353 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 GGNQ86UU5 652 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 PPIL6Q8IXY8 311 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 OR8H3Q8N146 312 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 NUP93Q8N1F7 819 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 TXLNBQ8N3L3 684 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 MIGA1Q8NAN2 632 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 KREMEN2Q8NCW0 462 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 TTLL11Q8NHH1 800 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 FNIP1Q8TF40 1166 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 RUBCNQ92622 972 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 VWCEQ96DN2 955 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 ZNF845Q96IR2 970 aaPredicted RBP6.96□□□□□ -1.3
VPS29-210ENST00000552130 EDEM3Q9BZQ6 932 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 PAIP1Q9H074 479 aaKnown RBP6.96□□□□□ -1.3
VPS29-210ENST00000552130 KCTD10Q9H3F6 313 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 ZNF287Q9HBT7 754 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 CCDC177Q9NQR7 707 aaPredicted RBP6.96□□□□□ -1.3
VPS29-210ENST00000552130 KCND1Q9NSA2 647 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 HPF1Q9NWY4 346 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 POGKQ9P215 609 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 OGDHLQ9ULD0 1010 aa6.96□□□□□ -1.3
VPS29-210ENST00000552130 ARHGAP6O43182 974 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 AKR1B10O60218 316 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 CCDC159P0C7I6 412 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 SCG2P13521 617 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 MSH2P43246 934 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 CTCFP49711 727 aaPredicted RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 AFF3P51826 1226 aaKnown RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 LIMK1P53667 647 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ADAM15Q13444 863 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 EFR3AQ14156 821 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 TAF7Q15545 349 aaPredicted RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 ZNF174Q15697 407 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 FSCN1Q16658 493 aaKnown RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 C5orf22Q49AR2 442 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 HSP90AB3PQ58FF7 597 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 KLHL10Q6JEL2 608 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ACAD10Q6JQN1 1059 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ZNF783Q6ZMS7 281 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 USP51Q70EK9 711 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 SLC44A2Q8IWA5 706 aaPredicted RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 ZNF619Q8N2I2 560 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 PPP1R14CQ8TAE6 165 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 CREB3L4Q8TEY5 395 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ST8SIA4Q92187 359 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ELF4Q99607 663 aaPredicted RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 SLX1AQ9BQ83 275 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 HEPHQ9BQS7 1158 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 BOCQ9BWV1 1114 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ASPNQ9BXN1 380 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 OR10A4Q9H209 315 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ACAD9Q9H845 621 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 C14orf93Q9H972 538 aaKnown RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 GPR55Q9Y2T6 319 aaPredicted RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 SNX8Q9Y5X2 465 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 NR2E3Q9Y5X4 410 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ATP23Q9Y6H3 246 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 ABCC9O60706 1549 aa6.95□□□□□ -1.3
VPS29-210ENST00000552130 TDRD9Q8NDG6 1382 aaKnown RBP6.95□□□□□ -1.3
VPS29-210ENST00000552130 A0A088AWK7 358 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 A0A0B4J269 797 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 hCG_1807616A0A1W2PRN6 198 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 F8W8V4 182 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 GSTA4O15217 222 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 SASH1O94885 1247 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 TMEM63AO94886 807 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 ANP32AP39687 249 aaKnown RBP6.94□□□□□ -1.3
VPS29-210ENST00000552130 EPHB3P54753 998 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 SLC12A2P55011 1212 aa6.94□□□□□ -1.3
VPS29-210ENST00000552130 CSE1LP55060 971 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms